Wall clock time and date at job start Fri Apr 10 2020 20:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99581 * 2 1 4 4 C 1.50696 * 120.00373 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.47157 * 94.99733 * 4 2 1 6 6 C 1.50700 * 109.47237 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99804 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00300 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00579 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.46824 * 325.00438 * 9 8 6 11 11 C 1.52998 * 109.47341 * 84.99728 * 9 8 6 12 12 C 1.53001 * 109.47586 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.46855 * 300.00505 * 12 11 9 14 14 C 1.52998 * 109.47470 * 59.99798 * 13 12 11 15 15 C 1.52994 * 109.47443 * 204.99985 * 9 8 6 16 16 H 1.08995 * 109.47674 * 299.99764 * 15 9 8 17 17 C 1.52998 * 109.47095 * 59.99968 * 15 9 8 18 18 N 1.46506 * 109.47237 * 184.99775 * 17 15 9 19 19 C 1.36939 * 120.00073 * 179.72302 * 18 17 15 20 20 H 1.08004 * 119.99859 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99849 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00455 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46615 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47374 * 119.99782 * 23 21 19 26 26 H 1.48495 * 109.47187 * 240.00172 * 23 21 19 27 27 H 1.08001 * 120.00358 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99882 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46844 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47489 * 299.99844 * 3 2 1 31 31 H 1.08999 * 109.47192 * 60.00206 * 3 2 1 32 32 H 1.08997 * 109.47172 * 334.99997 * 4 2 1 33 33 H 1.08993 * 109.47495 * 214.99821 * 4 2 1 34 34 H 1.08990 * 109.47201 * 60.00005 * 5 4 2 35 35 H 1.08999 * 109.47062 * 299.99984 * 5 4 2 36 36 H 0.97003 * 119.99751 * 359.97438 * 8 6 5 37 37 H 1.09001 * 109.47186 * 300.00830 * 11 9 8 38 38 H 1.08999 * 109.46837 * 60.00131 * 11 9 8 39 39 H 1.09008 * 109.46644 * 60.00133 * 12 11 9 40 40 H 1.08995 * 109.47001 * 180.02562 * 12 11 9 41 41 H 1.09005 * 109.47048 * 180.02562 * 13 12 11 42 42 H 1.09008 * 109.47190 * 299.99293 * 13 12 11 43 43 H 1.09000 * 109.46704 * 180.02562 * 14 13 12 44 44 H 1.08991 * 109.47281 * 59.99838 * 14 13 12 45 45 H 1.09001 * 109.47671 * 65.00115 * 17 15 9 46 46 H 1.08998 * 109.47454 * 305.00112 * 17 15 9 47 47 H 0.97005 * 119.99811 * 0.02562 * 18 17 15 48 48 H 0.97000 * 120.00679 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 6 3.1804 -2.9886 -1.4385 7 8 3.4045 -3.5599 -0.3923 8 7 3.6058 -3.5206 -2.6013 9 6 4.3383 -4.7893 -2.6020 10 1 4.9647 -4.8476 -1.7118 11 6 3.3442 -5.9523 -2.6030 12 6 4.1092 -7.2773 -2.6030 13 6 4.9895 -7.3578 -3.8517 14 6 5.9837 -6.1949 -3.8507 15 6 5.2183 -4.8695 -3.8510 16 1 4.5920 -4.8113 -4.7411 17 6 6.2125 -3.7066 -3.8500 18 7 6.9739 -3.7140 -5.1016 19 6 7.9253 -2.7559 -5.3300 20 1 8.1146 -1.9950 -4.5872 21 6 8.6463 -2.7626 -6.5160 22 7 8.4160 -3.6901 -7.4211 23 14 9.9446 -1.4560 -6.8273 24 1 10.0102 -0.5363 -5.6632 25 1 11.2655 -2.1067 -7.0197 26 1 9.5897 -0.6861 -8.0465 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 3.1351 1.1060 -0.0005 30 1 1.8001 1.8768 -0.8900 31 1 1.8001 1.8767 0.8900 32 1 1.4387 -2.0856 0.4334 33 1 2.9742 -1.1990 0.5888 34 1 3.0522 -0.9027 -1.8718 35 1 1.5167 -1.7893 -2.0272 36 1 3.4269 -3.0634 -3.4380 37 1 2.7172 -5.8951 -1.7131 38 1 2.7178 -5.8940 -3.4931 39 1 4.7354 -7.3353 -1.7126 40 1 3.4009 -8.1057 -2.6041 41 1 5.5342 -8.3020 -3.8520 42 1 4.3634 -7.2998 -4.7421 43 1 6.6106 -6.2521 -4.7406 44 1 6.6098 -6.2529 -2.9605 45 1 6.8964 -3.8139 -3.0081 46 1 5.6705 -2.7652 -3.7600 47 1 6.8011 -4.3950 -5.7705 48 1 8.9196 -3.6946 -8.2501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754345884.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:58 Heat of formation + Delta-G solvation = -47.054626 kcal Electronic energy + Delta-G solvation = -24055.629986 eV Core-core repulsion = 20723.529289 eV Total energy + Delta-G solvation = -3332.100697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 6.20 seconds Orbital eigenvalues (eV) -40.11456 -38.33189 -36.51170 -34.61987 -34.04942 -31.90029 -31.49167 -29.64516 -29.09760 -27.48271 -25.37794 -24.58751 -23.01524 -21.94243 -20.62865 -20.29504 -19.52597 -18.59028 -17.33556 -16.70863 -16.10668 -15.79565 -14.89770 -14.80417 -14.45418 -14.40313 -14.07523 -13.86017 -13.72424 -13.43375 -13.28793 -13.05971 -12.76577 -12.62591 -12.32542 -12.20002 -11.92184 -11.80921 -11.52351 -11.20694 -11.08178 -11.03269 -10.89839 -10.87873 -10.71806 -10.37826 -10.20517 -10.09322 -9.94521 -9.71289 -9.62312 -9.19994 -8.91305 -8.80215 -6.91945 -5.77682 -3.05883 1.98196 2.73653 3.30158 3.42290 3.48345 3.50310 4.53860 4.57487 4.69657 4.82625 4.88487 4.92288 5.02978 5.07875 5.16300 5.27621 5.32891 5.38300 5.43881 5.49311 5.57432 5.61297 5.65559 5.69193 5.69879 5.74351 5.76082 5.80654 5.90858 6.00667 6.12969 6.16131 6.23251 6.26444 6.30090 6.40963 6.41907 6.57342 6.61760 6.66555 6.69879 6.79686 6.92319 7.62861 7.70000 8.33181 8.41486 9.52839 10.10790 10.45675 11.45241 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.010740 B = 0.003987 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.493703 B = 7020.471109 C = 9310.086362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.136 4.136 6 C 0.513 3.487 7 O -0.547 6.547 8 N -0.721 5.721 9 C 0.153 3.847 10 H 0.086 0.914 11 C -0.125 4.125 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.107 4.107 15 C -0.100 4.100 16 H 0.074 0.926 17 C 0.159 3.841 18 N -0.731 5.731 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.402 0.598 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.384 0.616 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.841 0.732 11.715 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.122 4.122 3 C -0.180 4.180 4 C -0.108 4.108 5 C -0.176 4.176 6 C 0.299 3.701 7 O -0.425 6.425 8 N -0.371 5.371 9 C 0.049 3.951 10 H 0.104 0.896 11 C -0.164 4.164 12 C -0.153 4.153 13 C -0.159 4.159 14 C -0.145 4.145 15 C -0.119 4.119 16 H 0.092 0.908 17 C 0.031 3.969 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.236 0.764 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.218 0.782 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.555 0.472 12.495 19.958 hybrid contribution 0.583 0.761 -0.990 1.378 sum -14.972 1.232 11.506 18.922 Atomic orbital electron populations 1.23663 0.95290 1.01774 1.03056 1.21821 0.95418 0.95814 0.99114 1.20892 1.00426 0.94657 1.01998 1.20439 1.00815 0.94097 0.95422 1.21636 1.01250 0.95511 0.99193 1.20651 0.79102 0.86623 0.83682 1.90682 1.57183 1.63119 1.31495 1.46141 1.57420 1.24383 1.09167 1.20989 0.92413 0.82060 0.99678 0.89555 1.21885 0.98139 0.94518 1.01849 1.21486 0.98573 0.96507 0.98719 1.21597 0.97877 0.98694 0.97716 1.21499 0.97375 0.92370 1.03251 1.21597 0.96903 0.96846 0.96550 0.90759 1.20659 0.91910 0.94017 0.90282 1.42380 1.43416 1.35042 1.16711 1.19269 1.11370 1.05444 1.00784 0.91265 1.24721 1.00369 0.98948 0.96955 1.69663 1.44305 1.35391 1.08879 0.86137 0.81553 0.81012 0.77626 1.20594 1.21870 1.21896 0.88597 0.88504 0.91701 0.91486 0.91621 0.90685 0.90405 0.88639 0.88998 0.76357 0.91912 0.91988 0.91926 0.92223 0.92116 0.92053 0.90262 0.92068 0.96451 0.96377 0.78228 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 13.93 29.02 0.40 -1.24 16 2 C -0.12 -1.08 5.31 -101.07 -0.54 -1.62 16 3 C -0.12 -0.97 10.05 36.01 0.36 -0.61 16 4 C -0.07 -0.71 4.58 -27.88 -0.13 -0.84 16 5 C -0.14 -1.35 5.68 -27.88 -0.16 -1.51 16 6 C 0.51 6.76 7.79 -10.99 -0.09 6.68 16 7 O -0.55 -9.10 15.64 5.55 0.09 -9.01 16 8 N -0.72 -9.12 4.30 -53.81 -0.23 -9.35 16 9 C 0.15 2.13 1.90 -67.94 -0.13 2.00 16 10 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 11 C -0.13 -1.54 5.49 -26.73 -0.15 -1.69 16 12 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 13 C -0.12 -1.52 5.92 -26.74 -0.16 -1.68 16 14 C -0.11 -1.64 5.08 -26.71 -0.14 -1.77 16 15 C -0.10 -1.55 1.80 -90.60 -0.16 -1.71 16 16 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 17 C 0.16 3.14 5.56 -4.04 -0.02 3.12 16 18 N -0.73 -18.08 5.33 -59.91 -0.32 -18.40 16 19 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 23 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H 0.10 0.68 8.05 -52.49 -0.42 0.26 16 28 H 0.10 0.76 7.99 -52.48 -0.42 0.34 16 29 H 0.06 0.52 8.00 -51.93 -0.42 0.11 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 33 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 4.49 8.39 -40.82 -0.34 4.15 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 43 H 0.08 1.41 7.18 -51.93 -0.37 1.03 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.36 7.30 -51.93 -0.38 -0.02 16 47 H 0.38 9.91 6.85 -40.82 -0.28 9.63 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -31.49 383.11 -9.19 -40.68 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -8.90 Total: 9.80 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.30 Total: -9.61 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.17 Total: -54.94 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.49 -9.19 -40.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345884.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.372 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.20 seconds