Wall clock time and date at job start Fri Apr 10 2020 20:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99581 * 2 1 4 4 C 1.50696 * 120.00373 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.47157 * 94.99733 * 4 2 1 6 6 C 1.50700 * 109.47237 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99804 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00300 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00579 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.46824 * 325.00438 * 9 8 6 11 11 C 1.52998 * 109.47341 * 84.99728 * 9 8 6 12 12 C 1.53001 * 109.47586 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.46855 * 300.00505 * 12 11 9 14 14 C 1.52998 * 109.47470 * 59.99798 * 13 12 11 15 15 C 1.52994 * 109.47443 * 204.99985 * 9 8 6 16 16 H 1.08995 * 109.47674 * 299.99764 * 15 9 8 17 17 C 1.52998 * 109.47095 * 59.99968 * 15 9 8 18 18 N 1.46506 * 109.47237 * 184.99775 * 17 15 9 19 19 C 1.36939 * 120.00073 * 179.72302 * 18 17 15 20 20 H 1.08004 * 119.99859 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99849 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00455 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46615 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47374 * 119.99782 * 23 21 19 26 26 H 1.48495 * 109.47187 * 240.00172 * 23 21 19 27 27 H 1.08001 * 120.00358 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99882 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46844 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47489 * 299.99844 * 3 2 1 31 31 H 1.08999 * 109.47192 * 60.00206 * 3 2 1 32 32 H 1.08997 * 109.47172 * 334.99997 * 4 2 1 33 33 H 1.08993 * 109.47495 * 214.99821 * 4 2 1 34 34 H 1.08990 * 109.47201 * 60.00005 * 5 4 2 35 35 H 1.08999 * 109.47062 * 299.99984 * 5 4 2 36 36 H 0.97003 * 119.99751 * 359.97438 * 8 6 5 37 37 H 1.09001 * 109.47186 * 300.00830 * 11 9 8 38 38 H 1.08999 * 109.46837 * 60.00131 * 11 9 8 39 39 H 1.09008 * 109.46644 * 60.00133 * 12 11 9 40 40 H 1.08995 * 109.47001 * 180.02562 * 12 11 9 41 41 H 1.09005 * 109.47048 * 180.02562 * 13 12 11 42 42 H 1.09008 * 109.47190 * 299.99293 * 13 12 11 43 43 H 1.09000 * 109.46704 * 180.02562 * 14 13 12 44 44 H 1.08991 * 109.47281 * 59.99838 * 14 13 12 45 45 H 1.09001 * 109.47671 * 65.00115 * 17 15 9 46 46 H 1.08998 * 109.47454 * 305.00112 * 17 15 9 47 47 H 0.97005 * 119.99811 * 0.02562 * 18 17 15 48 48 H 0.97000 * 120.00679 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 6 3.1804 -2.9886 -1.4385 7 8 3.4045 -3.5599 -0.3923 8 7 3.6058 -3.5206 -2.6013 9 6 4.3383 -4.7893 -2.6020 10 1 4.9647 -4.8476 -1.7118 11 6 3.3442 -5.9523 -2.6030 12 6 4.1092 -7.2773 -2.6030 13 6 4.9895 -7.3578 -3.8517 14 6 5.9837 -6.1949 -3.8507 15 6 5.2183 -4.8695 -3.8510 16 1 4.5920 -4.8113 -4.7411 17 6 6.2125 -3.7066 -3.8500 18 7 6.9739 -3.7140 -5.1016 19 6 7.9253 -2.7559 -5.3300 20 1 8.1146 -1.9950 -4.5872 21 6 8.6463 -2.7626 -6.5160 22 7 8.4160 -3.6901 -7.4211 23 14 9.9446 -1.4560 -6.8273 24 1 10.0102 -0.5363 -5.6632 25 1 11.2655 -2.1067 -7.0197 26 1 9.5897 -0.6861 -8.0465 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 3.1351 1.1060 -0.0005 30 1 1.8001 1.8768 -0.8900 31 1 1.8001 1.8767 0.8900 32 1 1.4387 -2.0856 0.4334 33 1 2.9742 -1.1990 0.5888 34 1 3.0522 -0.9027 -1.8718 35 1 1.5167 -1.7893 -2.0272 36 1 3.4269 -3.0634 -3.4380 37 1 2.7172 -5.8951 -1.7131 38 1 2.7178 -5.8940 -3.4931 39 1 4.7354 -7.3353 -1.7126 40 1 3.4009 -8.1057 -2.6041 41 1 5.5342 -8.3020 -3.8520 42 1 4.3634 -7.2998 -4.7421 43 1 6.6106 -6.2521 -4.7406 44 1 6.6098 -6.2529 -2.9605 45 1 6.8964 -3.8139 -3.0081 46 1 5.6705 -2.7652 -3.7600 47 1 6.8011 -4.3950 -5.7705 48 1 8.9196 -3.6946 -8.2501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754345884.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:48 Heat of formation + Delta-G solvation = -65.200419 kcal Electronic energy + Delta-G solvation = -24056.416847 eV Core-core repulsion = 20723.529289 eV Total energy + Delta-G solvation = -3332.887558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -41.23807 -39.49003 -37.27628 -36.42006 -35.16700 -33.68794 -32.35200 -31.22458 -30.25045 -28.09979 -27.01399 -25.56264 -24.73231 -23.10042 -21.99205 -21.38589 -20.67067 -19.30288 -19.24633 -17.81963 -17.28189 -16.78602 -16.62737 -15.86926 -15.63673 -15.50381 -15.20116 -15.13835 -14.91542 -14.76815 -14.55555 -14.12593 -14.09699 -13.66711 -13.45935 -13.31232 -12.98529 -12.93526 -12.76525 -12.66425 -12.54983 -12.20159 -12.08166 -11.94549 -11.92707 -11.86330 -11.79402 -11.52195 -11.34844 -11.13450 -10.96484 -10.74536 -9.96065 -9.88220 -8.98900 -7.95532 -5.23771 1.32089 1.47004 1.47613 1.57515 1.68854 2.28214 2.55252 3.37983 3.55258 3.71446 3.79809 3.93401 3.98820 4.08332 4.09503 4.22941 4.30657 4.35635 4.41307 4.46209 4.50261 4.53594 4.57239 4.70886 4.70946 4.85487 4.86667 4.88519 4.98052 5.04334 5.11026 5.11985 5.15560 5.17396 5.21140 5.24752 5.29675 5.31333 5.43543 5.48267 5.52358 5.63099 5.76763 6.00342 6.26981 6.60053 7.29551 7.33983 8.09053 8.33943 9.27853 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.010740 B = 0.003987 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.493703 B = 7020.471109 C = 9310.086362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.066 4.066 5 C -0.128 4.128 6 C 0.510 3.490 7 O -0.585 6.585 8 N -0.717 5.717 9 C 0.161 3.839 10 H 0.064 0.936 11 C -0.117 4.117 12 C -0.111 4.111 13 C -0.114 4.114 14 C -0.105 4.105 15 C -0.085 4.085 16 H 0.079 0.921 17 C 0.160 3.840 18 N -0.740 5.740 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.071 4.071 22 N -0.966 5.966 23 Si 0.970 3.030 24 H -0.269 1.269 25 H -0.294 1.294 26 H -0.291 1.291 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.411 0.589 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.003 0.997 46 H 0.025 0.975 47 H 0.376 0.624 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.293 1.354 11.814 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.134 4.134 3 C -0.179 4.179 4 C -0.104 4.104 5 C -0.167 4.167 6 C 0.299 3.701 7 O -0.465 6.465 8 N -0.368 5.368 9 C 0.055 3.945 10 H 0.082 0.918 11 C -0.156 4.156 12 C -0.149 4.149 13 C -0.151 4.151 14 C -0.144 4.144 15 C -0.104 4.104 16 H 0.097 0.903 17 C 0.034 3.966 18 N -0.383 5.383 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.264 4.264 22 N -0.617 5.617 23 Si 0.799 3.201 24 H -0.194 1.194 25 H -0.221 1.221 26 H -0.218 1.218 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.247 0.753 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.021 0.979 46 H 0.043 0.957 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.027 1.113 12.611 21.218 hybrid contribution 1.021 0.563 -0.959 1.510 sum -16.006 1.676 11.652 19.869 Atomic orbital electron populations 1.23818 0.95046 1.02567 1.01658 1.21802 0.95715 0.95448 1.00392 1.20901 0.99925 0.94335 1.02761 1.20362 1.00082 0.94733 0.95259 1.21646 1.01866 0.93664 0.99542 1.21228 0.78631 0.87300 0.82982 1.90667 1.58719 1.64366 1.32788 1.46121 1.56907 1.24051 1.09671 1.20806 0.92564 0.83626 0.97459 0.91821 1.21816 0.97616 0.93922 1.02227 1.21474 0.98681 0.96863 0.97869 1.21537 0.97359 0.97642 0.98563 1.21443 0.97794 0.93690 1.01428 1.21433 0.96060 0.95258 0.97649 0.90265 1.20761 0.92052 0.96165 0.87649 1.42528 1.43505 1.34233 1.18001 1.19615 1.11672 1.05718 1.00689 0.91174 1.25499 1.02696 1.01195 0.96997 1.69805 1.45500 1.37164 1.09222 0.85123 0.78654 0.78654 0.77627 1.19357 1.22119 1.21754 0.87297 0.88245 0.92323 0.90657 0.90923 0.91627 0.92083 0.87553 0.86697 0.75278 0.92323 0.90666 0.92409 0.89941 0.91029 0.91359 0.93095 0.92853 0.97930 0.95704 0.79103 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 13.93 67.78 0.94 -1.84 16 2 C -0.13 -2.18 5.31 -16.48 -0.09 -2.27 16 3 C -0.12 -1.75 10.05 71.24 0.72 -1.03 16 4 C -0.07 -1.31 4.58 29.85 0.14 -1.17 16 5 C -0.13 -2.34 5.68 29.85 0.17 -2.17 16 6 C 0.51 13.10 7.79 87.66 0.68 13.78 16 7 O -0.58 -19.55 15.64 -3.05 -0.05 -19.60 16 8 N -0.72 -17.41 4.30 -442.55 -1.91 -19.31 16 9 C 0.16 4.37 1.90 44.99 0.09 4.46 16 10 H 0.06 2.06 7.58 -2.39 -0.02 2.04 16 11 C -0.12 -2.68 5.49 30.59 0.17 -2.51 16 12 C -0.11 -2.35 5.92 30.59 0.18 -2.17 16 13 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 14 C -0.11 -3.24 5.08 30.61 0.16 -3.08 16 15 C -0.08 -2.61 1.80 -10.78 -0.02 -2.63 16 16 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 17 C 0.16 6.38 5.56 86.38 0.48 6.86 16 18 N -0.74 -37.04 5.33 -343.44 -1.83 -38.87 16 19 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 20 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 21 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 22 N -0.97 -58.38 13.06 21.65 0.28 -58.10 16 23 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 H 0.11 1.28 8.05 -2.91 -0.02 1.26 16 28 H 0.10 1.36 7.99 -2.91 -0.02 1.34 16 29 H 0.06 0.89 8.00 -2.38 -0.02 0.87 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.40 7.94 -2.39 -0.02 1.38 16 33 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.41 8.52 8.39 -92.71 -0.78 7.74 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.07 1.53 8.14 -2.38 -0.02 1.52 16 43 H 0.05 1.85 7.18 -2.39 -0.02 1.84 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.03 0.97 7.30 -2.39 -0.02 0.95 16 47 H 0.38 19.82 6.85 -92.70 -0.64 19.18 16 48 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -67.61 383.11 3.13 -64.48 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -0.50 Total: 36.12 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 5.10 Total: -12.72 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -3.45 Total: -116.28 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.05 Total: -19.60 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -67.61 3.13 -64.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345884.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.719 kcal (2) G-P(sol) polarization free energy of solvation -67.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds