Wall clock time and date at job start Fri Apr 10 2020 20:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00120 * 2 1 4 4 C 1.50699 * 120.00007 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47500 * 95.00013 * 4 2 1 6 6 C 1.50694 * 109.47168 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 179.97438 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72721 * 8 6 5 10 10 H 1.08999 * 109.47597 * 34.99540 * 9 8 6 11 11 C 1.53000 * 109.47099 * 274.99655 * 9 8 6 12 12 C 1.53003 * 109.47256 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46878 * 60.00350 * 12 11 9 14 14 C 1.52999 * 109.47264 * 299.99879 * 13 12 11 15 15 C 1.52996 * 109.47222 * 155.00033 * 9 8 6 16 16 H 1.08999 * 109.47237 * 59.99286 * 15 9 8 17 17 C 1.52999 * 109.47147 * 299.99827 * 15 9 8 18 18 N 1.46501 * 109.47417 * 174.99973 * 17 15 9 19 19 C 1.36940 * 119.99925 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00076 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99636 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00499 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47457 * 89.99678 * 23 21 19 25 25 H 1.48504 * 109.47046 * 210.00043 * 23 21 19 26 26 H 1.48504 * 109.46995 * 329.99436 * 23 21 19 27 27 H 1.07998 * 120.00124 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00115 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47748 * 270.00145 * 3 2 1 30 30 H 1.09004 * 109.46844 * 30.00522 * 3 2 1 31 31 H 1.09004 * 109.47259 * 149.99963 * 3 2 1 32 32 H 1.09000 * 109.46737 * 334.99751 * 4 2 1 33 33 H 1.09002 * 109.46890 * 214.99862 * 4 2 1 34 34 H 1.08998 * 109.46837 * 60.00023 * 5 4 2 35 35 H 1.09002 * 109.46926 * 299.99827 * 5 4 2 36 36 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 37 37 H 1.09005 * 109.47224 * 300.00512 * 11 9 8 38 38 H 1.09008 * 109.47230 * 60.00254 * 11 9 8 39 39 H 1.08993 * 109.47058 * 300.00032 * 12 11 9 40 40 H 1.09000 * 109.46845 * 179.97438 * 12 11 9 41 41 H 1.09003 * 109.46817 * 179.97438 * 13 12 11 42 42 H 1.08993 * 109.47536 * 59.99974 * 13 12 11 43 43 H 1.09010 * 109.46991 * 300.00553 * 14 13 12 44 44 H 1.08994 * 109.47214 * 180.02562 * 14 13 12 45 45 H 1.09002 * 109.47030 * 294.99697 * 17 15 9 46 46 H 1.09000 * 109.47567 * 54.99895 * 17 15 9 47 47 H 0.96998 * 120.00228 * 359.97438 * 18 17 15 48 48 H 0.96999 * 120.00362 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 6 3.1803 -2.9887 -1.4383 7 8 3.4043 -3.5601 -0.3922 8 7 3.6049 -3.5213 -2.6014 9 6 4.3420 -4.7873 -2.6014 10 1 3.9557 -5.4327 -1.8125 11 6 5.8268 -4.5129 -2.3544 12 6 6.5968 -5.8350 -2.3550 13 6 6.4241 -6.5251 -3.7096 14 6 4.9394 -6.7995 -3.9566 15 6 4.1694 -5.4780 -3.9556 16 1 4.5557 -4.8325 -4.7445 17 6 2.6847 -5.7524 -4.2026 18 7 2.5072 -6.3042 -5.5481 19 6 1.2544 -6.6303 -5.9946 20 1 0.3972 -6.4810 -5.3548 21 6 1.0863 -7.1526 -7.2697 22 7 2.1308 -7.3340 -8.0497 23 14 -0.6228 -7.5968 -7.8792 24 1 -1.2303 -6.4198 -8.5506 25 1 -0.5275 -8.7222 -8.8433 26 1 -1.4691 -8.0015 -6.7280 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 2.2452 1.6198 -1.0276 30 1 1.4744 2.0647 0.5139 31 1 3.0159 1.1747 0.5138 32 1 1.4385 -2.0856 0.4334 33 1 2.9742 -1.1991 0.5889 34 1 3.0523 -0.9028 -1.8717 35 1 1.5167 -1.7894 -2.0272 36 1 3.4260 -3.0641 -3.4380 37 1 6.2131 -3.8674 -3.1433 38 1 5.9498 -4.0208 -1.3896 39 1 6.2106 -6.4807 -1.5665 40 1 7.6547 -5.6394 -2.1796 41 1 6.9731 -7.4668 -3.7102 42 1 6.8103 -5.8794 -4.4982 43 1 4.5531 -7.4453 -3.1679 44 1 4.8164 -7.2915 -4.9214 45 1 2.3199 -6.4678 -3.4655 46 1 2.1236 -4.8221 -4.1146 47 1 3.2771 -6.4386 -6.1226 48 1 2.0134 -7.6994 -8.9405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754345885.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:03 Heat of formation + Delta-G solvation = -47.045918 kcal Electronic energy + Delta-G solvation = -24047.541372 eV Core-core repulsion = 20715.441052 eV Total energy + Delta-G solvation = -3332.100320 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -40.11311 -38.33246 -36.50942 -34.61668 -34.04825 -31.89912 -31.49582 -29.64513 -29.09705 -27.49050 -25.37513 -24.58704 -23.01153 -21.94345 -20.62731 -20.29521 -19.52444 -18.59478 -17.33184 -16.70677 -16.11256 -15.77310 -14.93108 -14.77951 -14.52787 -14.24827 -14.17666 -13.84706 -13.74768 -13.35408 -13.33293 -13.07243 -12.73979 -12.67233 -12.32450 -12.18515 -11.91885 -11.81223 -11.52010 -11.20668 -11.09250 -11.02365 -10.89019 -10.87244 -10.71227 -10.37629 -10.22151 -10.09058 -9.95607 -9.70851 -9.61744 -9.20191 -8.90617 -8.79717 -6.91656 -5.77209 -3.05402 2.00200 2.73800 3.30355 3.42955 3.48510 3.50060 4.54024 4.57839 4.69338 4.82576 4.88719 4.93232 5.01813 5.07521 5.16455 5.27477 5.31508 5.38093 5.38706 5.50285 5.57673 5.61545 5.65544 5.69555 5.69854 5.71428 5.76162 5.81359 5.90877 6.00735 6.13169 6.16198 6.23464 6.26476 6.30168 6.41234 6.43698 6.57519 6.62008 6.67356 6.70213 6.80176 6.92569 7.63002 7.69957 8.33372 8.42022 9.53284 10.11232 10.46142 11.45671 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.003935 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.743212 B = 7113.632857 C = 9325.638005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.069 4.069 5 C -0.136 4.136 6 C 0.513 3.487 7 O -0.547 6.547 8 N -0.721 5.721 9 C 0.153 3.847 10 H 0.086 0.914 11 C -0.125 4.125 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.107 4.107 15 C -0.100 4.100 16 H 0.074 0.926 17 C 0.159 3.841 18 N -0.731 5.731 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.402 0.598 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.017 0.983 46 H 0.019 0.981 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.031 13.387 13.870 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.127 4.127 3 C -0.177 4.177 4 C -0.107 4.107 5 C -0.176 4.176 6 C 0.299 3.701 7 O -0.425 6.425 8 N -0.371 5.371 9 C 0.049 3.951 10 H 0.105 0.895 11 C -0.164 4.164 12 C -0.153 4.153 13 C -0.159 4.159 14 C -0.145 4.145 15 C -0.119 4.119 16 H 0.092 0.908 17 C 0.031 3.969 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.236 0.764 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.005 12.938 14.614 20.421 hybrid contribution -0.867 -0.073 -1.136 1.430 sum 5.138 12.865 13.478 19.328 Atomic orbital electron populations 1.23734 0.95275 1.01940 1.02272 1.21787 0.95458 0.95716 0.99774 1.20880 1.00172 0.94530 1.02117 1.20417 1.00722 0.94187 0.95358 1.21643 1.01454 0.95210 0.99294 1.20656 0.78883 0.86811 0.83708 1.90681 1.57463 1.62827 1.31503 1.46141 1.57252 1.24609 1.09114 1.20986 0.90854 0.84570 0.98732 0.89547 1.21888 0.94956 0.97856 1.01692 1.21485 0.99427 0.96335 0.98039 1.21595 0.97215 1.00215 0.96852 1.21483 0.93426 0.96410 1.03186 1.21576 0.97820 0.97178 0.95309 0.90773 1.20658 0.91490 0.96051 0.88668 1.42369 1.06938 1.76404 1.11823 1.19225 0.85753 1.34578 0.97387 0.91323 1.24719 0.97165 1.02168 0.96908 1.69652 1.28067 1.51314 1.09234 0.86206 0.83969 0.77725 0.78403 1.21752 1.21777 1.20787 0.88335 0.88571 0.91423 0.91980 0.91831 0.90528 0.90617 0.88982 0.88690 0.76363 0.91992 0.91908 0.91926 0.92224 0.92116 0.92053 0.92082 0.90259 0.96465 0.96370 0.78228 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.70 13.89 29.02 0.40 -1.30 16 2 C -0.13 -1.13 5.31 -101.07 -0.54 -1.67 16 3 C -0.12 -0.87 10.03 36.01 0.36 -0.51 16 4 C -0.07 -0.70 4.67 -27.88 -0.13 -0.83 16 5 C -0.14 -1.35 5.68 -27.89 -0.16 -1.51 16 6 C 0.51 6.77 7.79 -10.98 -0.09 6.68 16 7 O -0.55 -9.11 15.64 5.56 0.09 -9.02 16 8 N -0.72 -9.13 4.30 -53.81 -0.23 -9.36 16 9 C 0.15 2.13 1.90 -67.94 -0.13 2.01 16 10 H 0.09 1.38 7.57 -51.93 -0.39 0.99 16 11 C -0.13 -1.54 5.49 -26.73 -0.15 -1.69 16 12 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 13 C -0.12 -1.52 5.92 -26.73 -0.16 -1.67 16 14 C -0.11 -1.64 5.07 -26.76 -0.14 -1.78 16 15 C -0.10 -1.55 1.80 -90.65 -0.16 -1.72 16 16 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 17 C 0.16 3.15 5.57 -4.04 -0.02 3.13 16 18 N -0.73 -18.13 5.33 -59.91 -0.32 -18.45 16 19 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 20 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H 0.10 0.87 7.99 -52.49 -0.42 0.45 16 28 H 0.10 0.72 8.04 -52.49 -0.42 0.30 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 31 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 33 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.40 4.49 8.41 -40.82 -0.34 4.15 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 44 H 0.08 1.41 7.18 -51.93 -0.37 1.04 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.36 7.31 -51.93 -0.38 -0.02 16 47 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 48 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -31.58 383.08 -9.19 -40.78 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -8.90 Total: 9.78 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.31 Total: -9.62 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.17 Total: -55.06 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.58 -9.19 -40.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345885.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.267 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds