Wall clock time and date at job start Fri Apr 10 2020 20:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00656 * 2 1 4 4 C 1.50700 * 119.99863 * 179.97438 * 2 1 3 5 5 C 1.53007 * 109.46907 * 94.99937 * 4 2 1 6 6 C 1.50700 * 109.46907 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00138 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99921 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00171 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.46916 * 35.00151 * 9 8 6 11 11 C 1.53004 * 109.47304 * 275.00519 * 9 8 6 12 12 C 1.52995 * 109.46907 * 300.00090 * 11 9 8 13 13 C 1.53003 * 109.47323 * 299.99901 * 12 11 9 14 14 C 1.53004 * 109.47012 * 59.99790 * 13 12 11 15 15 C 1.52995 * 109.47249 * 300.00256 * 14 13 12 16 16 H 1.08999 * 109.47414 * 300.00424 * 15 14 13 17 17 C 1.52996 * 109.47350 * 179.97438 * 15 14 13 18 18 N 1.46504 * 109.46681 * 64.99926 * 17 15 14 19 19 C 1.36943 * 119.99781 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48501 * 109.46896 * 89.99850 * 23 21 19 25 25 H 1.48499 * 109.47039 * 210.00011 * 23 21 19 26 26 H 1.48501 * 109.47275 * 329.99811 * 23 21 19 27 27 H 1.07997 * 120.00543 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99653 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46815 * 270.00165 * 3 2 1 30 30 H 1.08999 * 109.47180 * 29.99575 * 3 2 1 31 31 H 1.08990 * 109.47709 * 149.99861 * 3 2 1 32 32 H 1.09006 * 109.47149 * 335.00624 * 4 2 1 33 33 H 1.09000 * 109.47592 * 215.00039 * 4 2 1 34 34 H 1.08998 * 109.46649 * 60.00735 * 5 4 2 35 35 H 1.08997 * 109.46976 * 299.99889 * 5 4 2 36 36 H 0.97000 * 119.99513 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.46997 * 59.99490 * 11 9 8 38 38 H 1.09000 * 109.47124 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47390 * 59.99965 * 12 11 9 40 40 H 1.09001 * 109.47241 * 179.97438 * 12 11 9 41 41 H 1.09002 * 109.47209 * 180.02562 * 13 12 11 42 42 H 1.09000 * 109.46940 * 300.00340 * 13 12 11 43 43 H 1.09002 * 109.46946 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.46819 * 60.00476 * 14 13 12 45 45 H 1.09006 * 109.47179 * 305.00542 * 17 15 14 46 46 H 1.08997 * 109.47540 * 185.00005 * 17 15 14 47 47 H 0.97000 * 120.00410 * 0.02562 * 18 17 15 48 48 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3051 0.0006 5 6 2.4273 -1.6846 -1.4363 6 6 3.1813 -2.9894 -1.4357 7 8 3.4052 -3.5599 -0.3891 8 7 3.6060 -3.5228 -2.5983 9 6 4.3384 -4.7915 -2.5978 10 1 3.9483 -5.4360 -1.8100 11 6 5.8238 -4.5228 -2.3478 12 6 6.3715 -3.6181 -3.4535 13 6 6.1988 -4.3072 -4.8086 14 6 4.7134 -4.5760 -5.0585 15 6 4.1658 -5.4807 -3.9528 16 1 4.7109 -6.4246 -3.9524 17 6 2.6804 -5.7490 -4.2023 18 7 2.5239 -6.5138 -5.4420 19 6 1.2742 -6.8726 -5.8721 20 1 0.4041 -6.5920 -5.2971 21 6 1.1263 -7.6023 -7.0436 22 7 2.1867 -7.9447 -7.7440 23 14 -0.5778 -8.0983 -7.6262 24 1 -1.1266 -7.0386 -8.5100 25 1 -0.4913 -9.3753 -8.3791 26 1 -1.4702 -8.2752 -6.4524 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5400 0.9354 0.0004 29 1 2.2452 1.6196 -1.0277 30 1 1.4746 2.0647 0.5138 31 1 3.0159 1.1747 0.5138 32 1 1.4384 -2.0853 0.4352 33 1 2.9741 -1.1987 0.5900 34 1 3.0523 -0.9044 -1.8709 35 1 1.5166 -1.7911 -2.0257 36 1 3.4265 -3.0667 -3.4353 37 1 5.9468 -4.0318 -1.3825 38 1 6.3687 -5.4668 -2.3470 39 1 5.8265 -2.6741 -3.4539 40 1 7.4295 -3.4263 -3.2752 41 1 6.5894 -3.6629 -5.5963 42 1 6.7438 -5.2512 -4.8082 43 1 4.5905 -5.0674 -6.0237 44 1 4.1685 -3.6320 -5.0589 45 1 2.1498 -4.8009 -4.2909 46 1 2.2691 -6.3191 -3.3693 47 1 3.3054 -6.7662 -5.9582 48 1 2.0833 -8.4542 -8.5628 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754345886.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:18 Heat of formation + Delta-G solvation = -44.029589 kcal Electronic energy + Delta-G solvation = -24271.850169 eV Core-core repulsion = 20939.880647 eV Total energy + Delta-G solvation = -3331.969522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.28735 -38.34456 -36.49150 -34.64663 -33.56881 -31.93039 -31.49208 -29.78144 -29.30510 -27.50140 -25.38315 -24.58685 -22.98303 -22.15448 -20.91946 -20.35998 -18.93579 -18.56970 -17.38749 -16.82940 -15.88713 -15.59739 -15.20147 -14.82435 -14.62480 -14.42156 -14.10025 -13.86600 -13.69355 -13.39635 -13.26200 -13.07626 -12.77331 -12.62690 -12.25178 -12.04187 -11.95744 -11.90050 -11.64005 -11.39973 -11.21260 -11.04335 -10.89914 -10.88095 -10.72045 -10.34342 -10.19955 -9.97677 -9.84619 -9.76762 -9.61254 -9.21456 -8.90461 -8.80000 -6.91668 -5.77088 -3.05282 1.99555 2.75034 3.33498 3.43094 3.48617 3.50216 4.54555 4.58283 4.68813 4.83503 4.88816 4.91440 4.93564 5.04331 5.12850 5.27293 5.30668 5.35261 5.37789 5.48755 5.57415 5.62482 5.65467 5.69042 5.70179 5.70798 5.76706 5.81040 5.84378 6.00486 6.07187 6.16139 6.17260 6.24471 6.29093 6.39511 6.43123 6.49434 6.64672 6.66840 6.68761 6.81874 6.89231 7.63957 7.70067 8.34592 8.42169 9.53421 10.11358 10.46171 11.45826 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.003793 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.339641 B = 7380.061865 C = 9022.061217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.069 4.069 5 C -0.136 4.136 6 C 0.512 3.488 7 O -0.547 6.547 8 N -0.716 5.716 9 C 0.154 3.846 10 H 0.086 0.914 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.110 4.110 15 C -0.102 4.102 16 H 0.084 0.916 17 C 0.161 3.839 18 N -0.731 5.731 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.401 0.599 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 16.571 12.264 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.127 4.127 3 C -0.177 4.177 4 C -0.107 4.107 5 C -0.176 4.176 6 C 0.298 3.702 7 O -0.425 6.425 8 N -0.368 5.368 9 C 0.049 3.951 10 H 0.104 0.896 11 C -0.166 4.166 12 C -0.152 4.152 13 C -0.158 4.158 14 C -0.147 4.147 15 C -0.121 4.121 16 H 0.103 0.897 17 C 0.033 3.967 18 N -0.375 5.375 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.236 0.764 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.693 16.117 13.002 21.476 hybrid contribution -0.846 -0.206 -1.073 1.382 sum 4.846 15.911 11.929 20.468 Atomic orbital electron populations 1.23735 0.95276 1.01934 1.02295 1.21790 0.95456 0.95722 0.99755 1.20876 1.00178 0.94536 1.02101 1.20418 1.00725 0.94169 0.95363 1.21641 1.01395 0.95276 0.99288 1.20648 0.78918 0.86810 0.83775 1.90682 1.57512 1.62857 1.31480 1.46154 1.57186 1.24435 1.09002 1.20939 0.91010 0.84740 0.98381 0.89564 1.21894 0.95633 1.00426 0.98673 1.21484 1.00082 0.98704 0.94976 1.21587 0.97234 1.00552 0.96460 1.21525 0.94341 0.99189 0.99690 1.21623 0.98610 0.98943 0.92911 0.89747 1.20635 0.91538 0.94579 0.89962 1.42373 1.06366 1.64898 1.23912 1.19225 0.85439 1.27832 1.04461 0.91319 1.24720 0.97087 1.01171 0.97985 1.69649 1.27412 1.43888 1.17315 0.86203 0.83903 0.77735 0.78449 1.21748 1.21779 1.20787 0.88333 0.88582 0.91443 0.91983 0.91827 0.90520 0.90611 0.89060 0.88757 0.76368 0.91835 0.91130 0.92338 0.92564 0.92302 0.91933 0.90313 0.92706 0.96444 0.96518 0.78220 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 13.89 29.02 0.40 -1.28 16 2 C -0.13 -1.12 5.31 -101.07 -0.54 -1.65 16 3 C -0.12 -0.85 10.03 36.01 0.36 -0.49 16 4 C -0.07 -0.70 4.67 -27.88 -0.13 -0.83 16 5 C -0.14 -1.33 5.68 -27.88 -0.16 -1.48 16 6 C 0.51 6.65 7.79 -10.98 -0.09 6.57 16 7 O -0.55 -9.03 15.65 5.55 0.09 -8.95 16 8 N -0.72 -8.86 3.61 -53.80 -0.19 -9.06 16 9 C 0.15 2.11 2.23 -67.93 -0.15 1.96 16 10 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 11 C -0.13 -1.54 5.60 -26.73 -0.15 -1.69 16 12 C -0.11 -1.24 5.77 -26.73 -0.15 -1.40 16 13 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 14 C -0.11 -1.56 4.90 -26.73 -0.13 -1.69 16 15 C -0.10 -1.57 2.02 -90.62 -0.18 -1.75 16 16 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 17 C 0.16 3.17 5.42 -4.04 -0.02 3.14 16 18 N -0.73 -18.15 5.33 -59.91 -0.32 -18.47 16 19 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 23 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H 0.10 0.86 7.99 -52.49 -0.42 0.44 16 28 H 0.10 0.71 8.04 -52.48 -0.42 0.29 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 33 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.40 4.46 6.67 -40.82 -0.27 4.19 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.62 7.60 -51.93 -0.39 0.22 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.34 7.18 -51.93 -0.37 0.97 16 44 H 0.05 0.73 6.51 -51.93 -0.34 0.39 16 45 H 0.02 0.35 7.61 -51.93 -0.39 -0.05 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.38 9.94 6.85 -40.82 -0.28 9.66 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -31.52 378.96 -9.09 -40.61 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.73 Total: 9.52 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.34 Total: -9.47 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.21 Total: -54.83 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.52 -9.09 -40.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345886.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.421 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds