Wall clock time and date at job start Fri Apr 10 2020 20:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00656 * 2 1 4 4 C 1.50700 * 119.99863 * 179.97438 * 2 1 3 5 5 C 1.53007 * 109.46907 * 94.99937 * 4 2 1 6 6 C 1.50700 * 109.46907 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00138 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99921 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00171 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.46916 * 35.00151 * 9 8 6 11 11 C 1.53004 * 109.47304 * 275.00519 * 9 8 6 12 12 C 1.52995 * 109.46907 * 300.00090 * 11 9 8 13 13 C 1.53003 * 109.47323 * 299.99901 * 12 11 9 14 14 C 1.53004 * 109.47012 * 59.99790 * 13 12 11 15 15 C 1.52995 * 109.47249 * 300.00256 * 14 13 12 16 16 H 1.08999 * 109.47414 * 300.00424 * 15 14 13 17 17 C 1.52996 * 109.47350 * 179.97438 * 15 14 13 18 18 N 1.46504 * 109.46681 * 64.99926 * 17 15 14 19 19 C 1.36943 * 119.99781 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48501 * 109.46896 * 89.99850 * 23 21 19 25 25 H 1.48499 * 109.47039 * 210.00011 * 23 21 19 26 26 H 1.48501 * 109.47275 * 329.99811 * 23 21 19 27 27 H 1.07997 * 120.00543 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99653 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46815 * 270.00165 * 3 2 1 30 30 H 1.08999 * 109.47180 * 29.99575 * 3 2 1 31 31 H 1.08990 * 109.47709 * 149.99861 * 3 2 1 32 32 H 1.09006 * 109.47149 * 335.00624 * 4 2 1 33 33 H 1.09000 * 109.47592 * 215.00039 * 4 2 1 34 34 H 1.08998 * 109.46649 * 60.00735 * 5 4 2 35 35 H 1.08997 * 109.46976 * 299.99889 * 5 4 2 36 36 H 0.97000 * 119.99513 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.46997 * 59.99490 * 11 9 8 38 38 H 1.09000 * 109.47124 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47390 * 59.99965 * 12 11 9 40 40 H 1.09001 * 109.47241 * 179.97438 * 12 11 9 41 41 H 1.09002 * 109.47209 * 180.02562 * 13 12 11 42 42 H 1.09000 * 109.46940 * 300.00340 * 13 12 11 43 43 H 1.09002 * 109.46946 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.46819 * 60.00476 * 14 13 12 45 45 H 1.09006 * 109.47179 * 305.00542 * 17 15 14 46 46 H 1.08997 * 109.47540 * 185.00005 * 17 15 14 47 47 H 0.97000 * 120.00410 * 0.02562 * 18 17 15 48 48 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3051 0.0006 5 6 2.4273 -1.6846 -1.4363 6 6 3.1813 -2.9894 -1.4357 7 8 3.4052 -3.5599 -0.3891 8 7 3.6060 -3.5228 -2.5983 9 6 4.3384 -4.7915 -2.5978 10 1 3.9483 -5.4360 -1.8100 11 6 5.8238 -4.5228 -2.3478 12 6 6.3715 -3.6181 -3.4535 13 6 6.1988 -4.3072 -4.8086 14 6 4.7134 -4.5760 -5.0585 15 6 4.1658 -5.4807 -3.9528 16 1 4.7109 -6.4246 -3.9524 17 6 2.6804 -5.7490 -4.2023 18 7 2.5239 -6.5138 -5.4420 19 6 1.2742 -6.8726 -5.8721 20 1 0.4041 -6.5920 -5.2971 21 6 1.1263 -7.6023 -7.0436 22 7 2.1867 -7.9447 -7.7440 23 14 -0.5778 -8.0983 -7.6262 24 1 -1.1266 -7.0386 -8.5100 25 1 -0.4913 -9.3753 -8.3791 26 1 -1.4702 -8.2752 -6.4524 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5400 0.9354 0.0004 29 1 2.2452 1.6196 -1.0277 30 1 1.4746 2.0647 0.5138 31 1 3.0159 1.1747 0.5138 32 1 1.4384 -2.0853 0.4352 33 1 2.9741 -1.1987 0.5900 34 1 3.0523 -0.9044 -1.8709 35 1 1.5166 -1.7911 -2.0257 36 1 3.4265 -3.0667 -3.4353 37 1 5.9468 -4.0318 -1.3825 38 1 6.3687 -5.4668 -2.3470 39 1 5.8265 -2.6741 -3.4539 40 1 7.4295 -3.4263 -3.2752 41 1 6.5894 -3.6629 -5.5963 42 1 6.7438 -5.2512 -4.8082 43 1 4.5905 -5.0674 -6.0237 44 1 4.1685 -3.6320 -5.0589 45 1 2.1498 -4.8009 -4.2909 46 1 2.2691 -6.3191 -3.3693 47 1 3.3054 -6.7662 -5.9582 48 1 2.0833 -8.4542 -8.5628 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754345886.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:12 Heat of formation + Delta-G solvation = -61.947623 kcal Electronic energy + Delta-G solvation = -24272.627153 eV Core-core repulsion = 20939.880647 eV Total energy + Delta-G solvation = -3332.746506 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 7.35 seconds Orbital eigenvalues (eV) -41.40050 -39.46547 -37.25557 -36.45058 -34.64602 -33.71621 -32.34858 -31.24098 -30.53727 -28.07910 -27.00843 -25.55777 -24.68747 -23.28509 -22.10397 -21.58839 -20.01803 -19.29854 -19.24346 -18.00919 -16.95637 -16.66270 -16.60455 -16.21827 -15.63700 -15.56951 -15.22473 -15.02627 -15.00897 -14.73790 -14.59117 -14.13905 -13.97765 -13.55671 -13.37389 -13.10297 -13.01608 -12.93201 -12.81414 -12.69722 -12.59504 -12.50713 -12.12106 -11.95965 -11.92078 -11.84947 -11.80693 -11.41091 -11.17826 -11.03369 -10.85485 -10.82684 -9.94880 -9.89634 -8.99603 -7.95979 -5.24322 1.32172 1.46597 1.47893 1.56407 1.71522 2.32214 2.54965 3.37382 3.58094 3.75848 3.80317 3.85181 3.99536 4.08474 4.09612 4.24181 4.30018 4.37012 4.43555 4.48518 4.51575 4.59200 4.66530 4.68991 4.73308 4.77719 4.89559 4.92233 5.00369 5.02064 5.09361 5.10765 5.17220 5.18609 5.21326 5.28055 5.31288 5.36729 5.47028 5.49742 5.53655 5.64698 5.77026 6.00766 6.26471 6.62105 7.32049 7.33373 8.08773 8.33342 9.27305 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.003793 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.339641 B = 7380.061865 C = 9022.061217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 C -0.119 4.119 4 C -0.067 4.067 5 C -0.128 4.128 6 C 0.510 3.490 7 O -0.586 6.586 8 N -0.710 5.710 9 C 0.161 3.839 10 H 0.062 0.938 11 C -0.121 4.121 12 C -0.107 4.107 13 C -0.114 4.114 14 C -0.104 4.104 15 C -0.088 4.088 16 H 0.074 0.926 17 C 0.162 3.838 18 N -0.740 5.740 19 C -0.247 4.247 20 H 0.070 0.930 21 C -0.072 4.072 22 N -0.967 5.967 23 Si 0.971 3.029 24 H -0.284 1.284 25 H -0.295 1.295 26 H -0.273 1.273 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.409 0.591 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.026 0.974 46 H 0.001 0.999 47 H 0.376 0.624 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.834 18.658 12.285 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.131 4.131 3 C -0.176 4.176 4 C -0.105 4.105 5 C -0.167 4.167 6 C 0.298 3.702 7 O -0.467 6.467 8 N -0.362 5.362 9 C 0.056 3.944 10 H 0.081 0.919 11 C -0.160 4.160 12 C -0.144 4.144 13 C -0.152 4.152 14 C -0.142 4.142 15 C -0.107 4.107 16 H 0.092 0.908 17 C 0.036 3.964 18 N -0.383 5.383 19 C -0.379 4.379 20 H 0.088 0.912 21 C -0.264 4.264 22 N -0.617 5.617 23 Si 0.800 3.200 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.198 1.198 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.121 0.879 36 H 0.246 0.754 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.019 0.981 47 H 0.209 0.791 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.809 18.237 13.038 23.158 hybrid contribution -0.904 -0.870 -1.016 1.614 sum 4.905 17.367 12.022 21.684 Atomic orbital electron populations 1.23850 0.95397 1.02318 1.02140 1.21840 0.95537 0.95773 0.99945 1.20900 1.00141 0.93616 1.02925 1.20354 1.00233 0.94478 0.95402 1.21649 1.01681 0.93988 0.99400 1.21226 0.78391 0.87515 0.83067 1.90670 1.59039 1.64131 1.32834 1.46101 1.56847 1.23807 1.09446 1.20738 0.92560 0.84958 0.96158 0.91940 1.21832 0.94024 1.01037 0.99101 1.21441 1.01287 0.98359 0.93360 1.21535 0.94987 1.00965 0.97685 1.21447 0.96556 0.98869 0.97299 1.21448 0.95439 0.99246 0.94612 0.90779 1.20740 0.94683 0.93709 0.87317 1.42535 1.05226 1.65359 1.25228 1.19588 0.86625 1.27246 1.04419 0.91165 1.25513 1.00690 1.01790 0.98417 1.69798 1.29371 1.44898 1.17657 0.85179 0.79764 0.77052 0.77997 1.21107 1.22132 1.19832 0.89056 0.87201 0.90407 0.91173 0.91610 0.92550 0.91251 0.86297 0.87876 0.75356 0.92212 0.90791 0.91460 0.90712 0.90801 0.92222 0.93393 0.91470 0.95648 0.98108 0.79130 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.17 13.89 67.79 0.94 -2.23 16 2 C -0.13 -2.09 5.31 -16.48 -0.09 -2.18 16 3 C -0.12 -1.41 10.03 71.24 0.71 -0.69 16 4 C -0.07 -1.29 4.67 29.85 0.14 -1.15 16 5 C -0.13 -2.26 5.68 29.85 0.17 -2.09 16 6 C 0.51 12.79 7.79 87.66 0.68 13.48 16 7 O -0.59 -19.43 15.65 -3.05 -0.05 -19.48 16 8 N -0.71 -16.72 3.61 -442.52 -1.60 -18.32 16 9 C 0.16 4.36 2.23 44.99 0.10 4.46 16 10 H 0.06 2.01 7.58 -2.39 -0.02 1.99 16 11 C -0.12 -2.75 5.60 30.59 0.17 -2.58 16 12 C -0.11 -2.01 5.77 30.59 0.18 -1.84 16 13 C -0.11 -2.46 5.92 30.60 0.18 -2.28 16 14 C -0.10 -2.87 4.90 30.59 0.15 -2.72 16 15 C -0.09 -2.72 2.02 -10.80 -0.02 -2.74 16 16 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 17 C 0.16 6.47 5.42 86.38 0.47 6.93 16 18 N -0.74 -37.39 5.33 -343.44 -1.83 -39.22 16 19 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 20 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 21 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 22 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 23 Si 0.97 46.20 29.55 68.60 2.03 48.22 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 27 H 0.09 1.55 7.99 -2.91 -0.02 1.52 16 28 H 0.11 1.42 8.04 -2.91 -0.02 1.39 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.72 8.06 -2.39 -0.02 0.70 16 31 H 0.06 0.75 8.08 -2.39 -0.02 0.73 16 32 H 0.06 1.30 7.94 -2.38 -0.02 1.28 16 33 H 0.07 1.42 8.05 -2.39 -0.02 1.40 16 34 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.41 8.28 6.67 -92.71 -0.62 7.66 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.18 7.60 -2.39 -0.02 1.16 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 43 H 0.05 1.64 7.18 -2.39 -0.02 1.62 16 44 H 0.07 1.66 6.51 -2.39 -0.02 1.65 16 45 H 0.03 0.99 7.61 -2.38 -0.02 0.97 16 46 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 47 H 0.38 19.99 6.85 -92.71 -0.64 19.35 16 48 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -68.19 378.96 3.59 -64.60 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.33 Total: 34.99 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 5.09 Total: -12.31 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -3.15 Total: -116.03 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.05 Total: -19.48 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -68.19 3.59 -64.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345886.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.653 kcal (2) G-P(sol) polarization free energy of solvation -68.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.35 seconds