Wall clock time and date at job start Fri Apr 10 2020 20:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99790 * 2 1 4 4 O 1.21281 * 119.99791 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00022 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.46841 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47295 * 299.99727 * 6 5 3 8 8 C 1.52999 * 109.47329 * 60.00221 * 6 5 3 9 9 C 1.53006 * 109.47056 * 180.02562 * 6 5 3 10 10 C 1.52999 * 117.49510 * 248.74546 * 9 6 5 11 11 C 1.52994 * 117.49752 * 180.08888 * 9 6 5 12 12 C 1.46499 * 119.99982 * 179.97438 * 2 1 3 13 13 C 1.53782 * 113.61652 * 60.00231 * 12 2 1 14 14 C 1.53781 * 87.08260 * 220.01840 * 13 12 2 15 15 N 1.46497 * 113.61305 * 270.79919 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31615 * 119.99762 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00190 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47113 * 89.99658 * 20 18 16 22 22 H 1.48503 * 109.46988 * 209.99850 * 20 18 16 23 23 H 1.48501 * 109.46739 * 329.99844 * 20 18 16 24 24 C 1.53786 * 87.17350 * 25.39213 * 14 13 12 25 25 H 1.08997 * 109.47336 * 269.99759 * 1 2 3 26 26 H 1.09000 * 109.47075 * 30.00567 * 1 2 3 27 27 H 1.09009 * 109.46825 * 149.99777 * 1 2 3 28 28 H 1.08996 * 109.47239 * 299.99754 * 5 3 2 29 29 H 1.09004 * 109.46970 * 60.00328 * 5 3 2 30 30 H 1.09006 * 109.46819 * 60.00042 * 7 6 5 31 31 H 1.08997 * 109.47333 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47500 * 300.00401 * 7 6 5 33 33 H 1.08996 * 109.47445 * 59.99947 * 8 6 5 34 34 H 1.09006 * 109.47054 * 180.02562 * 8 6 5 35 35 H 1.09004 * 109.46968 * 299.99453 * 8 6 5 36 36 H 1.08992 * 115.55043 * 34.41179 * 9 6 5 37 37 H 1.09000 * 117.50126 * 359.97438 * 10 9 6 38 38 H 1.09003 * 117.49878 * 145.01319 * 10 9 6 39 39 H 1.09004 * 117.49813 * 214.97101 * 11 9 6 40 40 H 1.08996 * 117.50607 * 359.97438 * 11 9 6 41 41 H 1.08997 * 112.90648 * 191.25794 * 12 2 1 42 42 H 1.09001 * 113.61250 * 105.46657 * 13 12 2 43 43 H 1.08997 * 113.61225 * 334.56498 * 13 12 2 44 44 H 1.09002 * 113.61445 * 139.98212 * 14 13 12 45 45 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 46 46 H 0.97005 * 119.99972 * 180.02562 * 19 18 16 47 47 H 1.08993 * 113.61491 * 89.15923 * 24 14 13 48 48 H 1.09000 * 113.61138 * 220.06261 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3796 3.6352 -0.0011 7 6 3.2592 3.5547 1.2482 8 6 3.2592 3.5536 -1.2503 9 6 1.6146 4.9602 -0.0011 10 6 1.6870 5.8178 -1.2661 11 6 2.4366 6.2505 -0.0036 12 6 2.1975 -1.2687 0.0006 13 6 1.8955 -2.1550 -1.2193 14 6 1.9130 -3.3527 -0.2548 15 7 3.2394 -3.9515 -0.0869 16 6 3.3561 -5.2537 0.3206 17 1 2.4704 -5.8392 0.5178 18 6 4.6129 -5.8213 0.4792 19 7 4.7250 -7.0729 0.8704 20 14 6.1450 -4.8087 0.1374 21 1 6.5718 -4.1210 1.3823 22 1 7.2340 -5.7021 -0.3330 23 1 5.8470 -3.7981 -0.9091 24 6 1.5384 -2.3625 0.8606 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5139 28 1 0.7591 2.5298 -0.8908 29 1 0.7583 2.5302 0.8892 30 1 3.8042 2.6107 1.2486 31 1 3.9672 4.3835 1.2481 32 1 2.6325 3.6129 2.1382 33 1 2.6326 3.6110 -2.1403 34 1 3.9678 4.3819 -1.2504 35 1 3.8043 2.6097 -1.2499 36 1 0.6771 4.9618 0.5550 37 1 2.2800 5.4382 -2.0982 38 1 0.7973 6.3838 -1.5421 39 1 2.0398 7.1013 0.5504 40 1 3.5225 6.1556 -0.0049 41 1 3.2624 -1.1437 0.1965 42 1 2.6999 -2.1747 -1.9546 43 1 0.9184 -1.9671 -1.6643 44 1 1.1383 -4.0911 -0.4615 45 1 4.0349 -3.4257 -0.2643 46 1 5.6033 -7.4695 0.9816 47 1 0.4636 -2.2314 0.9853 48 1 2.0550 -2.5495 1.8020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755856468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:18:10 Heat of formation + Delta-G solvation = 26.126986 kcal Electronic energy + Delta-G solvation = -24540.181830 eV Core-core repulsion = 21211.254525 eV Total energy + Delta-G solvation = -3328.927304 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62555 -39.15955 -37.82556 -34.97057 -33.72501 -32.96474 -30.46544 -28.31392 -27.42137 -27.12677 -25.23830 -24.56893 -23.51822 -22.46869 -22.25454 -19.65992 -18.46196 -18.38319 -17.75114 -17.16386 -16.21384 -15.99589 -15.76728 -14.92735 -14.81035 -14.19633 -14.11292 -13.77207 -13.47422 -13.37541 -13.01167 -12.75750 -12.65363 -12.39574 -12.23111 -12.05055 -11.90956 -11.89428 -11.78464 -11.46516 -11.16232 -11.10114 -10.92868 -10.88771 -10.72489 -10.49016 -10.37629 -10.25567 -10.07050 -9.77006 -9.61764 -9.32013 -8.93488 -8.44528 -7.32091 -5.80170 -3.16845 2.66510 3.04998 3.39152 3.43459 3.46904 3.56014 4.30781 4.47101 4.57762 4.65625 4.69012 4.84448 4.92657 4.98950 5.00012 5.05523 5.12538 5.20464 5.26871 5.35913 5.36117 5.40617 5.44004 5.56668 5.57409 5.62499 5.71180 5.71859 5.74967 5.81102 5.88382 5.93623 5.99326 6.01497 6.09928 6.14619 6.27659 6.41473 6.45993 6.47304 6.57994 6.69171 6.89517 7.50666 7.96529 8.27966 8.39206 9.16699 9.89300 10.07834 11.37637 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.003286 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.352163 B = 8519.015895 C = 9191.890737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.604 5.604 3 C 0.511 3.489 4 O -0.532 6.532 5 C -0.128 4.128 6 C -0.014 4.014 7 C -0.151 4.151 8 C -0.156 4.156 9 C -0.143 4.143 10 C -0.186 4.186 11 C -0.178 4.178 12 C 0.122 3.878 13 C -0.169 4.169 14 C 0.177 3.823 15 N -0.730 5.730 16 C -0.249 4.249 17 H 0.092 0.908 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.882 3.118 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.276 1.276 24 C -0.180 4.180 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.363 0.637 46 H 0.260 0.740 47 H 0.075 0.925 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 25.292 -3.046 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.336 5.336 3 C 0.300 3.700 4 O -0.410 6.410 5 C -0.167 4.167 6 C -0.015 4.015 7 C -0.208 4.208 8 C -0.213 4.213 9 C -0.161 4.161 10 C -0.223 4.223 11 C -0.215 4.215 12 C 0.019 3.981 13 C -0.209 4.209 14 C 0.065 3.935 15 N -0.370 5.370 16 C -0.378 4.378 17 H 0.110 0.890 18 C -0.188 4.188 19 N -0.578 5.578 20 Si 0.712 3.288 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.202 1.202 24 C -0.222 4.222 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.197 0.803 46 H 0.070 0.930 47 H 0.094 0.906 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.558 25.005 -2.973 27.305 hybrid contribution 0.898 0.759 -0.130 1.183 sum -9.660 25.764 -3.103 27.690 Atomic orbital electron populations 1.21752 0.80081 1.03072 1.01814 1.47997 1.06707 1.06205 1.72683 1.20657 0.88172 0.85332 0.75874 1.90577 1.14039 1.86918 1.49497 1.21761 0.98928 0.92180 1.03873 1.19758 0.93974 0.90625 0.97133 1.22079 0.99425 1.03805 0.95481 1.22223 0.99489 1.03904 0.95706 1.22361 1.00611 0.91450 1.01708 1.23159 1.02854 1.03778 0.92478 1.22918 0.99114 0.97861 1.01564 1.22767 0.97643 0.80081 0.97605 1.23950 1.01711 0.97639 0.97597 1.20853 0.89132 0.91475 0.92040 1.42556 1.01215 1.12014 1.81247 1.19083 0.94416 0.86438 1.37889 0.88980 1.24669 0.97127 0.95917 1.01127 1.69698 1.23142 1.12196 1.52793 0.86592 0.84183 0.79713 0.78355 1.20894 1.21588 1.20187 1.24285 0.99794 0.97250 1.00851 0.92579 0.91333 0.90540 0.89091 0.89176 0.89570 0.93116 0.93583 0.93238 0.93127 0.89498 0.88065 0.88088 0.89270 0.89146 0.88765 0.86803 0.91269 0.90082 0.90708 0.80334 0.92956 0.90617 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 8.85 59.85 0.53 1.19 16 2 N -0.60 -7.64 3.08 -172.89 -0.53 -8.17 16 3 C 0.51 6.73 7.09 -10.99 -0.08 6.65 16 4 O -0.53 -8.84 10.83 5.56 0.06 -8.78 16 5 C -0.13 -1.20 3.30 -27.88 -0.09 -1.29 16 6 C -0.01 -0.14 0.62 -154.51 -0.10 -0.24 16 7 C -0.15 -1.68 8.02 37.16 0.30 -1.38 16 8 C -0.16 -1.69 6.77 37.16 0.25 -1.44 16 9 C -0.14 -1.15 5.14 -90.62 -0.47 -1.62 16 10 C -0.19 -1.39 9.57 -26.70 -0.26 -1.64 16 11 C -0.18 -1.37 9.38 -26.70 -0.25 -1.62 16 12 C 0.12 1.91 4.09 -67.02 -0.27 1.63 16 13 C -0.17 -2.62 7.36 -25.92 -0.19 -2.81 16 14 C 0.18 3.30 4.55 -67.12 -0.31 3.00 16 15 N -0.73 -17.24 5.12 -52.64 -0.27 -17.51 16 16 C -0.25 -6.97 10.45 -15.06 -0.16 -7.13 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 18 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 19 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 20 Si 0.88 22.47 27.74 -169.99 -4.71 17.75 16 21 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 23 H -0.28 -6.70 6.52 56.52 0.37 -6.34 16 24 C -0.18 -2.89 7.32 -25.82 -0.19 -3.08 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 27 H 0.08 0.64 6.35 -51.92 -0.33 0.31 16 28 H 0.09 0.72 7.40 -51.93 -0.38 0.33 16 29 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 30 H 0.09 1.20 5.51 -51.93 -0.29 0.92 16 31 H 0.05 0.53 7.29 -51.93 -0.38 0.15 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.48 6.97 -51.93 -0.36 0.12 16 34 H 0.05 0.51 7.08 -51.93 -0.37 0.15 16 35 H 0.09 1.19 5.51 -51.93 -0.29 0.90 16 36 H 0.10 0.73 8.11 -51.93 -0.42 0.31 16 37 H 0.10 0.79 5.85 -51.93 -0.30 0.48 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.77 7.07 -51.93 -0.37 0.40 16 41 H 0.11 2.12 7.24 -51.93 -0.38 1.75 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.04 6.92 -51.93 -0.36 0.69 16 44 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 45 H 0.36 8.63 5.76 -40.82 -0.24 8.39 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 47 H 0.08 1.01 6.74 -51.93 -0.35 0.66 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -32.03 361.17 -8.72 -40.76 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.11 Total: 8.60 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.37 Total: -9.65 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.03 Total: -54.12 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.78 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.03 -8.72 -40.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755856468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.884 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds