Wall clock time and date at job start Fri Apr 10 2020 20:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99790 * 2 1 4 4 O 1.21281 * 119.99791 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00022 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.46841 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47295 * 299.99727 * 6 5 3 8 8 C 1.52999 * 109.47329 * 60.00221 * 6 5 3 9 9 C 1.53006 * 109.47056 * 180.02562 * 6 5 3 10 10 C 1.52999 * 117.49510 * 248.74546 * 9 6 5 11 11 C 1.52994 * 117.49752 * 180.08888 * 9 6 5 12 12 C 1.46499 * 119.99982 * 179.97438 * 2 1 3 13 13 C 1.53782 * 113.61652 * 60.00231 * 12 2 1 14 14 C 1.53781 * 87.08260 * 220.01840 * 13 12 2 15 15 N 1.46497 * 113.61305 * 270.79919 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31615 * 119.99762 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00190 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47113 * 89.99658 * 20 18 16 22 22 H 1.48503 * 109.46988 * 209.99850 * 20 18 16 23 23 H 1.48501 * 109.46739 * 329.99844 * 20 18 16 24 24 C 1.53786 * 87.17350 * 25.39213 * 14 13 12 25 25 H 1.08997 * 109.47336 * 269.99759 * 1 2 3 26 26 H 1.09000 * 109.47075 * 30.00567 * 1 2 3 27 27 H 1.09009 * 109.46825 * 149.99777 * 1 2 3 28 28 H 1.08996 * 109.47239 * 299.99754 * 5 3 2 29 29 H 1.09004 * 109.46970 * 60.00328 * 5 3 2 30 30 H 1.09006 * 109.46819 * 60.00042 * 7 6 5 31 31 H 1.08997 * 109.47333 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47500 * 300.00401 * 7 6 5 33 33 H 1.08996 * 109.47445 * 59.99947 * 8 6 5 34 34 H 1.09006 * 109.47054 * 180.02562 * 8 6 5 35 35 H 1.09004 * 109.46968 * 299.99453 * 8 6 5 36 36 H 1.08992 * 115.55043 * 34.41179 * 9 6 5 37 37 H 1.09000 * 117.50126 * 359.97438 * 10 9 6 38 38 H 1.09003 * 117.49878 * 145.01319 * 10 9 6 39 39 H 1.09004 * 117.49813 * 214.97101 * 11 9 6 40 40 H 1.08996 * 117.50607 * 359.97438 * 11 9 6 41 41 H 1.08997 * 112.90648 * 191.25794 * 12 2 1 42 42 H 1.09001 * 113.61250 * 105.46657 * 13 12 2 43 43 H 1.08997 * 113.61225 * 334.56498 * 13 12 2 44 44 H 1.09002 * 113.61445 * 139.98212 * 14 13 12 45 45 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 46 46 H 0.97005 * 119.99972 * 180.02562 * 19 18 16 47 47 H 1.08993 * 113.61491 * 89.15923 * 24 14 13 48 48 H 1.09000 * 113.61138 * 220.06261 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3796 3.6352 -0.0011 7 6 3.2592 3.5547 1.2482 8 6 3.2592 3.5536 -1.2503 9 6 1.6146 4.9602 -0.0011 10 6 1.6870 5.8178 -1.2661 11 6 2.4366 6.2505 -0.0036 12 6 2.1975 -1.2687 0.0006 13 6 1.8955 -2.1550 -1.2193 14 6 1.9130 -3.3527 -0.2548 15 7 3.2394 -3.9515 -0.0869 16 6 3.3561 -5.2537 0.3206 17 1 2.4704 -5.8392 0.5178 18 6 4.6129 -5.8213 0.4792 19 7 4.7250 -7.0729 0.8704 20 14 6.1450 -4.8087 0.1374 21 1 6.5718 -4.1210 1.3823 22 1 7.2340 -5.7021 -0.3330 23 1 5.8470 -3.7981 -0.9091 24 6 1.5384 -2.3625 0.8606 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5139 28 1 0.7591 2.5298 -0.8908 29 1 0.7583 2.5302 0.8892 30 1 3.8042 2.6107 1.2486 31 1 3.9672 4.3835 1.2481 32 1 2.6325 3.6129 2.1382 33 1 2.6326 3.6110 -2.1403 34 1 3.9678 4.3819 -1.2504 35 1 3.8043 2.6097 -1.2499 36 1 0.6771 4.9618 0.5550 37 1 2.2800 5.4382 -2.0982 38 1 0.7973 6.3838 -1.5421 39 1 2.0398 7.1013 0.5504 40 1 3.5225 6.1556 -0.0049 41 1 3.2624 -1.1437 0.1965 42 1 2.6999 -2.1747 -1.9546 43 1 0.9184 -1.9671 -1.6643 44 1 1.1383 -4.0911 -0.4615 45 1 4.0349 -3.4257 -0.2643 46 1 5.6033 -7.4695 0.9816 47 1 0.4636 -2.2314 0.9853 48 1 2.0550 -2.5495 1.8020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755856468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:18:09 Heat of formation + Delta-G solvation = 6.868526 kcal Electronic energy + Delta-G solvation = -24541.016939 eV Core-core repulsion = 21211.254525 eV Total energy + Delta-G solvation = -3329.762414 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61371 -40.21515 -38.83121 -36.28259 -34.83303 -34.40927 -32.45240 -29.21826 -28.27404 -27.94663 -26.57656 -26.06997 -24.70978 -23.64610 -23.01867 -20.85110 -19.76029 -19.57811 -19.21003 -18.18473 -17.32080 -16.77554 -16.66355 -16.52315 -16.12373 -15.63164 -15.03557 -14.76699 -14.67716 -14.55186 -14.34176 -14.18339 -13.74038 -13.49679 -13.40885 -13.36106 -13.03962 -12.88528 -12.72199 -12.51577 -12.36384 -12.26832 -12.20006 -11.92546 -11.84571 -11.81494 -11.73235 -11.62994 -11.20259 -11.08536 -10.97860 -10.71681 -10.33160 -9.47871 -9.34518 -8.06775 -5.39729 1.34143 1.35891 1.42026 1.70549 2.10199 2.43113 2.97055 3.23805 3.44883 3.55497 3.72953 3.73958 3.82586 4.00204 4.04329 4.21145 4.21927 4.25586 4.30331 4.34586 4.38988 4.58650 4.66508 4.73070 4.76160 4.80371 4.81966 4.84509 4.87838 4.94769 5.04812 5.06772 5.06993 5.12908 5.13442 5.18548 5.20909 5.29683 5.34129 5.42837 5.53487 5.58420 5.73642 5.77231 6.19079 6.55549 7.03131 7.31990 7.80518 7.96740 9.14415 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.003286 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.352163 B = 8519.015895 C = 9191.890737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.604 5.604 3 C 0.501 3.499 4 O -0.575 6.575 5 C -0.118 4.118 6 C -0.014 4.014 7 C -0.148 4.148 8 C -0.152 4.152 9 C -0.142 4.142 10 C -0.181 4.181 11 C -0.184 4.184 12 C 0.127 3.873 13 C -0.148 4.148 14 C 0.154 3.846 15 N -0.739 5.739 16 C -0.229 4.229 17 H 0.067 0.933 18 C -0.059 4.059 19 N -0.979 5.979 20 Si 0.945 3.055 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.260 1.260 24 C -0.162 4.162 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.118 0.882 44 H 0.075 0.925 45 H 0.362 0.638 46 H 0.258 0.742 47 H 0.113 0.887 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.821 28.390 -3.834 31.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.335 5.335 3 C 0.291 3.709 4 O -0.456 6.456 5 C -0.158 4.158 6 C -0.014 4.014 7 C -0.205 4.205 8 C -0.209 4.209 9 C -0.160 4.160 10 C -0.217 4.217 11 C -0.221 4.221 12 C 0.023 3.977 13 C -0.187 4.187 14 C 0.044 3.956 15 N -0.380 5.380 16 C -0.360 4.360 17 H 0.085 0.915 18 C -0.250 4.250 19 N -0.630 5.630 20 Si 0.773 3.227 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.185 1.185 24 C -0.203 4.203 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.136 0.864 44 H 0.094 0.906 45 H 0.195 0.805 46 H 0.067 0.933 47 H 0.131 0.869 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.268 28.163 -3.778 31.360 hybrid contribution 1.621 -0.174 0.129 1.635 sum -11.648 27.989 -3.649 30.534 Atomic orbital electron populations 1.22101 0.77129 1.05046 1.03304 1.48044 1.08378 1.04768 1.72321 1.21432 0.87944 0.86577 0.74916 1.90588 1.16212 1.87569 1.51210 1.21793 0.98610 0.89242 1.06116 1.19726 0.93939 0.92192 0.95542 1.22011 0.99676 1.01953 0.96881 1.22148 0.99685 1.02034 0.97013 1.22304 1.00939 0.90179 1.02534 1.23199 1.03175 1.03382 0.91993 1.22967 0.98652 0.98241 1.02192 1.22318 0.96204 0.81873 0.97354 1.23816 1.03206 0.95080 0.96623 1.21194 0.86832 0.92714 0.94852 1.42587 1.03382 1.10576 1.81457 1.19090 0.93377 0.87862 1.35630 0.91545 1.25385 1.00271 0.97035 1.02343 1.69850 1.23630 1.14123 1.55368 0.85557 0.80306 0.78367 0.78443 1.20955 1.21762 1.18479 1.24112 1.01732 0.96007 0.98487 0.91310 0.88295 0.89753 0.86542 0.86817 0.92835 0.93142 0.92670 0.92052 0.93213 0.92735 0.86316 0.88698 0.87749 0.87971 0.89860 0.90531 0.92692 0.86353 0.90645 0.80491 0.93267 0.86921 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.85 127.77 1.13 1.96 16 2 N -0.60 -13.70 3.08 -819.29 -2.53 -16.23 16 3 C 0.50 12.36 7.09 87.66 0.62 12.98 16 4 O -0.58 -19.41 10.83 -3.03 -0.03 -19.45 16 5 C -0.12 -1.81 3.30 29.85 0.10 -1.72 16 6 C -0.01 -0.24 0.62 -52.18 -0.03 -0.27 16 7 C -0.15 -3.20 8.02 71.98 0.58 -2.63 16 8 C -0.15 -3.16 6.77 71.98 0.49 -2.67 16 9 C -0.14 -1.81 5.14 -10.79 -0.06 -1.87 16 10 C -0.18 -2.14 9.57 30.62 0.29 -1.85 16 11 C -0.18 -2.39 9.38 30.62 0.29 -2.10 16 12 C 0.13 3.83 4.09 45.58 0.19 4.01 16 13 C -0.15 -4.28 7.36 31.12 0.23 -4.05 16 14 C 0.15 5.60 4.55 45.52 0.21 5.80 16 15 N -0.74 -35.14 5.12 -320.44 -1.64 -36.78 16 16 C -0.23 -13.11 10.45 84.03 0.88 -12.23 16 17 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16 18 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 19 N -0.98 -63.35 13.97 21.65 0.30 -63.05 16 20 Si 0.95 47.57 27.74 68.60 1.90 49.48 16 21 H -0.28 -14.15 7.11 99.48 0.71 -13.45 16 22 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 23 H -0.26 -12.20 6.52 99.48 0.65 -11.55 16 24 C -0.16 -4.98 7.32 31.18 0.23 -4.75 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.10 0.69 6.44 -2.39 -0.02 0.67 16 27 H 0.08 0.96 6.35 -2.38 -0.02 0.94 16 28 H 0.12 1.24 7.40 -2.39 -0.02 1.22 16 29 H 0.11 1.26 8.11 -2.38 -0.02 1.24 16 30 H 0.05 1.54 5.51 -2.38 -0.01 1.53 16 31 H 0.05 1.05 7.29 -2.39 -0.02 1.03 16 32 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.06 1.09 6.97 -2.39 -0.02 1.07 16 34 H 0.05 1.00 7.08 -2.38 -0.02 0.98 16 35 H 0.05 1.52 5.51 -2.38 -0.01 1.51 16 36 H 0.12 1.16 8.11 -2.39 -0.02 1.14 16 37 H 0.09 1.25 5.85 -2.39 -0.01 1.23 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.26 7.07 -2.39 -0.02 1.25 16 41 H 0.08 2.92 7.24 -2.39 -0.02 2.91 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.12 2.56 6.92 -2.39 -0.02 2.55 16 44 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 45 H 0.36 17.27 5.76 -92.71 -0.53 16.73 16 46 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 47 H 0.11 2.62 6.74 -2.39 -0.02 2.60 16 48 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -73.59 361.17 3.96 -69.63 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.35 Total: 28.82 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.60 Total: -12.42 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -3.86 Total: -116.06 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.03 Total: -19.45 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.90 Total: 49.48 kcal Total: -73.59 3.96 -69.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755856468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.498 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds