Wall clock time and date at job start Fri Apr 10 2020 20:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.70081 * 2 1 4 4 C 1.53199 * 109.58411 * 120.34879 * 2 1 3 5 5 C 1.53043 * 109.31107 * 174.42357 * 4 2 1 6 6 C 1.53045 * 109.53666 * 298.64088 * 5 4 2 7 7 H 1.08999 * 109.49367 * 301.37594 * 6 5 4 8 8 N 1.46505 * 109.49306 * 181.31784 * 6 5 4 9 9 C 1.34774 * 119.99639 * 154.99870 * 8 6 5 10 10 O 1.21286 * 120.00420 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00126 * 179.97438 * 9 8 6 12 12 C 1.52996 * 109.47659 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47541 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47541 * 179.97438 * 13 12 11 15 15 C 1.53003 * 117.49791 * 243.62164 * 14 13 12 16 16 C 1.53001 * 60.00029 * 252.50840 * 15 14 13 17 17 C 1.53189 * 109.31433 * 61.36429 * 6 5 4 18 18 N 1.46916 * 109.58900 * 239.64136 * 2 1 3 19 19 C 1.36929 * 120.63255 * 6.62790 * 18 2 1 20 20 H 1.08006 * 120.00244 * 330.15827 * 19 18 2 21 21 C 1.38822 * 120.00378 * 150.15790 * 19 18 2 22 22 N 1.31618 * 119.99470 * 344.49228 * 21 19 18 23 23 Si 1.86800 * 119.99995 * 164.49418 * 21 19 18 24 24 H 1.48499 * 109.47265 * 59.99911 * 23 21 19 25 25 H 1.48500 * 109.46652 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47028 * 299.99634 * 23 21 19 27 27 H 1.09008 * 109.47590 * 299.64774 * 1 2 3 28 28 H 1.08999 * 109.47248 * 59.64830 * 1 2 3 29 29 H 1.09002 * 109.47085 * 179.64614 * 1 2 3 30 30 H 1.08999 * 109.49152 * 54.47908 * 4 2 1 31 31 H 1.08999 * 109.50097 * 294.37603 * 4 2 1 32 32 H 1.08998 * 109.45624 * 178.61760 * 5 4 2 33 33 H 1.08998 * 109.44898 * 58.65104 * 5 4 2 34 34 H 0.96996 * 119.99897 * 334.99394 * 8 6 5 35 35 H 1.09002 * 109.47271 * 59.99433 * 11 9 8 36 36 H 1.09008 * 109.46922 * 300.00431 * 11 9 8 37 37 H 1.08996 * 109.46991 * 59.99933 * 12 11 9 38 38 H 1.09003 * 109.46719 * 300.00112 * 12 11 9 39 39 H 1.09003 * 109.47118 * 299.99761 * 13 12 11 40 40 H 1.09002 * 109.47417 * 59.99258 * 13 12 11 41 41 H 1.08998 * 115.54886 * 29.32532 * 14 13 12 42 42 H 1.09000 * 117.49976 * 0.02562 * 15 14 13 43 43 H 1.09001 * 117.50012 * 145.01534 * 15 14 13 44 44 H 1.09001 * 117.49555 * 252.51453 * 16 15 14 45 45 H 1.08996 * 117.50164 * 107.49170 * 16 15 14 46 46 H 1.09001 * 109.58661 * 65.15698 * 17 6 5 47 47 H 1.09004 * 109.58645 * 185.57681 * 17 6 5 48 48 H 0.97004 * 119.99557 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 1.2456 5 6 3.5674 -0.8479 1.1703 6 6 3.9569 -1.6656 -0.0633 7 1 3.4988 -2.6529 -0.0047 8 7 5.4143 -1.8052 -0.1172 9 6 5.9677 -2.8481 -0.7673 10 8 5.2593 -3.6712 -1.3073 11 6 7.4668 -2.9915 -0.8233 12 6 7.8297 -4.2492 -1.6152 13 6 9.3516 -4.3951 -1.6715 14 6 9.7145 -5.6531 -2.4630 15 6 10.4432 -6.7720 -1.7159 16 6 11.1976 -5.9142 -2.7336 17 6 3.4650 -0.9469 -1.3236 18 7 2.0225 -0.6996 -1.1943 19 6 1.1538 -1.1127 -2.1688 20 1 0.1397 -1.3797 -1.9105 21 6 1.5766 -1.1885 -3.4889 22 7 2.6874 -0.5877 -3.8597 23 14 0.5688 -2.1430 -4.7390 24 1 -0.7916 -1.5548 -4.8312 25 1 1.2299 -2.0705 -6.0668 26 1 0.4669 -3.5619 -4.3131 27 1 -0.3634 0.5084 0.8932 28 1 -0.3634 0.5193 -0.8868 29 1 -0.3633 -1.0277 -0.0063 30 1 1.6029 -1.7252 1.2914 31 1 1.7659 -0.1667 2.1369 32 1 3.9377 -1.3447 2.0671 33 1 4.0059 0.1475 1.0994 34 1 5.9808 -1.1471 0.3149 35 1 7.8621 -3.0725 0.1893 36 1 7.8973 -2.1176 -1.3125 37 1 7.4345 -4.1676 -2.6278 38 1 7.3991 -5.1231 -1.1264 39 1 9.7826 -3.5212 -2.1601 40 1 9.7466 -4.4767 -0.6589 41 1 9.0031 -5.9439 -3.2358 42 1 10.6636 -6.6120 -0.6604 43 1 10.2110 -7.7993 -1.9971 44 1 11.4617 -6.3771 -3.6845 45 1 11.9148 -5.1897 -2.3480 46 1 3.9904 0.0020 -1.4316 47 1 3.6518 -1.5718 -2.1970 48 1 2.9826 -0.6403 -4.7822 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132246708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:25 Heat of formation + Delta-G solvation = -17.168588 kcal Electronic energy + Delta-G solvation = -24221.141575 eV Core-core repulsion = 20890.336834 eV Total energy + Delta-G solvation = -3330.804741 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.47630 -37.95591 -37.47868 -34.38177 -33.65315 -32.76523 -30.72809 -29.82348 -28.04044 -25.84073 -24.86532 -22.67467 -22.43935 -22.10105 -20.56714 -20.49036 -19.79854 -19.11636 -16.66868 -16.39849 -15.87257 -15.51908 -15.36229 -14.95077 -14.39693 -13.99343 -13.78353 -13.75019 -13.36244 -13.31056 -12.74415 -12.51656 -12.27669 -12.14344 -11.84574 -11.70934 -11.64744 -11.39479 -11.10274 -11.08200 -10.85897 -10.79362 -10.66122 -10.47383 -10.37035 -10.34787 -10.23406 -9.99273 -9.93647 -9.69849 -9.40832 -9.20839 -8.44824 -8.36600 -6.56199 -5.70204 -3.14840 3.14913 3.45008 3.51191 3.53542 3.59041 3.68103 4.48276 4.57728 4.74595 4.76535 4.96573 5.11020 5.18730 5.29176 5.38712 5.41089 5.43524 5.52651 5.56266 5.60951 5.66884 5.67690 5.71037 5.76315 5.89037 5.91568 6.01108 6.10863 6.14389 6.26256 6.30415 6.35056 6.42389 6.43072 6.49024 6.55747 6.66103 6.79642 7.03956 7.08019 7.16068 7.37321 7.78264 7.89632 8.03465 8.54710 8.77073 9.28919 9.93189 10.48967 11.37974 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.003641 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.268988 B = 7689.404467 C = 9086.712470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.080 0.920 8 N -0.724 5.724 9 C 0.506 3.494 10 O -0.535 6.535 11 C -0.140 4.140 12 C -0.101 4.101 13 C -0.089 4.089 14 C -0.150 4.150 15 C -0.183 4.183 16 C -0.185 4.185 17 C 0.170 3.830 18 N -0.583 5.583 19 C -0.254 4.254 20 H 0.069 0.931 21 C 0.007 3.993 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.283 1.283 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.391 0.609 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.016 0.984 47 H 0.092 0.908 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.389 -3.965 9.153 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.098 0.902 8 N -0.375 5.375 9 C 0.292 3.708 10 O -0.411 6.411 11 C -0.180 4.180 12 C -0.139 4.139 13 C -0.126 4.126 14 C -0.168 4.168 15 C -0.220 4.220 16 C -0.222 4.222 17 C 0.043 3.957 18 N -0.307 5.307 19 C -0.384 4.384 20 H 0.087 0.913 21 C -0.192 4.192 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.209 1.209 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.224 0.776 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.034 0.966 47 H 0.110 0.890 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.912 -4.550 8.572 16.153 hybrid contribution -0.065 -0.096 -0.494 0.507 sum 12.847 -4.646 8.079 15.871 Atomic orbital electron populations 1.21798 0.96018 1.01417 1.00127 1.20485 0.93047 0.93523 0.87103 0.95818 1.22051 0.94399 1.01283 0.98888 1.21674 0.97339 0.99605 0.96771 1.21950 0.78207 1.00707 0.98073 0.90194 1.46118 1.08448 1.26891 1.55998 1.20592 0.90448 0.81351 0.78401 1.90737 1.63723 1.42116 1.44496 1.21674 0.93216 1.00741 1.02344 1.21303 0.94322 0.96911 1.01392 1.21206 0.96246 0.95957 0.99180 1.22377 0.94732 0.97326 1.02371 1.23024 1.04922 0.96323 0.97685 1.22959 0.94982 1.03620 1.00608 1.21053 0.83500 0.96763 0.94403 1.44012 1.02666 1.64766 1.19249 1.19087 0.95066 1.38194 0.86006 0.91343 1.25081 0.97803 0.99266 0.97038 1.69997 1.24087 1.43617 1.16729 0.86406 0.79431 0.80472 0.80673 1.20948 1.21689 1.20917 0.94377 0.92027 0.92791 0.92120 0.92752 0.93197 0.92365 0.77615 0.89556 0.89181 0.90920 0.91195 0.91548 0.91993 0.87619 0.88912 0.89059 0.89031 0.88943 0.96633 0.88964 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.95 37.16 0.30 -2.30 16 2 C 0.17 3.43 3.50 -67.60 -0.24 3.19 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.19 5.37 -26.61 -0.14 -2.33 16 5 C -0.12 -1.89 5.35 -26.69 -0.14 -2.04 16 6 C 0.12 2.29 2.61 -67.81 -0.18 2.11 16 7 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16 8 N -0.72 -11.76 5.08 -53.69 -0.27 -12.04 16 9 C 0.51 8.74 7.80 -10.99 -0.09 8.65 16 10 O -0.53 -11.96 15.64 5.55 0.09 -11.87 16 11 C -0.14 -1.67 5.70 -27.89 -0.16 -1.83 16 12 C -0.10 -1.25 4.46 -26.74 -0.12 -1.37 16 13 C -0.09 -0.85 5.50 -26.74 -0.15 -1.00 16 14 C -0.15 -1.46 5.74 -90.62 -0.52 -1.98 16 15 C -0.18 -1.58 10.18 -26.73 -0.27 -1.86 16 16 C -0.18 -1.56 10.25 -26.73 -0.27 -1.83 16 17 C 0.17 4.17 4.86 -3.71 -0.02 4.15 16 18 N -0.58 -14.75 2.99 -164.77 -0.49 -15.24 16 19 C -0.25 -7.06 8.58 -15.06 -0.13 -7.19 16 20 H 0.07 1.85 6.23 -52.48 -0.33 1.52 16 21 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 22 N -0.90 -26.98 11.23 55.49 0.62 -26.36 16 23 Si 0.90 22.68 29.58 -169.99 -5.03 17.66 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 27 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.06 1.27 7.67 -51.93 -0.40 0.87 16 29 H 0.05 1.05 7.40 -51.93 -0.38 0.66 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.39 4.90 8.60 -40.82 -0.35 4.55 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.53 7.87 -51.93 -0.41 0.13 16 41 H 0.11 1.11 8.07 -51.93 -0.42 0.69 16 42 H 0.09 0.74 8.03 -51.93 -0.42 0.33 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.68 6.15 -51.93 -0.32 2.36 16 48 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -32.65 376.57 -10.51 -43.17 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.89 Total: 4.51 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.21 Total: -5.49 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.14 Total: -53.64 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.65 -10.51 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132246708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.998 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds