Wall clock time and date at job start Fri Apr 10 2020 20:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.70081 * 2 1 4 4 C 1.53199 * 109.58411 * 120.34879 * 2 1 3 5 5 C 1.53043 * 109.31107 * 174.42357 * 4 2 1 6 6 C 1.53045 * 109.53666 * 298.64088 * 5 4 2 7 7 H 1.08999 * 109.49367 * 301.37594 * 6 5 4 8 8 N 1.46505 * 109.49306 * 181.31784 * 6 5 4 9 9 C 1.34774 * 119.99639 * 154.99870 * 8 6 5 10 10 O 1.21286 * 120.00420 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00126 * 179.97438 * 9 8 6 12 12 C 1.52996 * 109.47659 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47541 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47541 * 179.97438 * 13 12 11 15 15 C 1.53003 * 117.49791 * 243.62164 * 14 13 12 16 16 C 1.53001 * 60.00029 * 252.50840 * 15 14 13 17 17 C 1.53189 * 109.31433 * 61.36429 * 6 5 4 18 18 N 1.46916 * 109.58900 * 239.64136 * 2 1 3 19 19 C 1.36929 * 120.63255 * 6.62790 * 18 2 1 20 20 H 1.08006 * 120.00244 * 330.15827 * 19 18 2 21 21 C 1.38822 * 120.00378 * 150.15790 * 19 18 2 22 22 N 1.31618 * 119.99470 * 344.49228 * 21 19 18 23 23 Si 1.86800 * 119.99995 * 164.49418 * 21 19 18 24 24 H 1.48499 * 109.47265 * 59.99911 * 23 21 19 25 25 H 1.48500 * 109.46652 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47028 * 299.99634 * 23 21 19 27 27 H 1.09008 * 109.47590 * 299.64774 * 1 2 3 28 28 H 1.08999 * 109.47248 * 59.64830 * 1 2 3 29 29 H 1.09002 * 109.47085 * 179.64614 * 1 2 3 30 30 H 1.08999 * 109.49152 * 54.47908 * 4 2 1 31 31 H 1.08999 * 109.50097 * 294.37603 * 4 2 1 32 32 H 1.08998 * 109.45624 * 178.61760 * 5 4 2 33 33 H 1.08998 * 109.44898 * 58.65104 * 5 4 2 34 34 H 0.96996 * 119.99897 * 334.99394 * 8 6 5 35 35 H 1.09002 * 109.47271 * 59.99433 * 11 9 8 36 36 H 1.09008 * 109.46922 * 300.00431 * 11 9 8 37 37 H 1.08996 * 109.46991 * 59.99933 * 12 11 9 38 38 H 1.09003 * 109.46719 * 300.00112 * 12 11 9 39 39 H 1.09003 * 109.47118 * 299.99761 * 13 12 11 40 40 H 1.09002 * 109.47417 * 59.99258 * 13 12 11 41 41 H 1.08998 * 115.54886 * 29.32532 * 14 13 12 42 42 H 1.09000 * 117.49976 * 0.02562 * 15 14 13 43 43 H 1.09001 * 117.50012 * 145.01534 * 15 14 13 44 44 H 1.09001 * 117.49555 * 252.51453 * 16 15 14 45 45 H 1.08996 * 117.50164 * 107.49170 * 16 15 14 46 46 H 1.09001 * 109.58661 * 65.15698 * 17 6 5 47 47 H 1.09004 * 109.58645 * 185.57681 * 17 6 5 48 48 H 0.97004 * 119.99557 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 1.2456 5 6 3.5674 -0.8479 1.1703 6 6 3.9569 -1.6656 -0.0633 7 1 3.4988 -2.6529 -0.0047 8 7 5.4143 -1.8052 -0.1172 9 6 5.9677 -2.8481 -0.7673 10 8 5.2593 -3.6712 -1.3073 11 6 7.4668 -2.9915 -0.8233 12 6 7.8297 -4.2492 -1.6152 13 6 9.3516 -4.3951 -1.6715 14 6 9.7145 -5.6531 -2.4630 15 6 10.4432 -6.7720 -1.7159 16 6 11.1976 -5.9142 -2.7336 17 6 3.4650 -0.9469 -1.3236 18 7 2.0225 -0.6996 -1.1943 19 6 1.1538 -1.1127 -2.1688 20 1 0.1397 -1.3797 -1.9105 21 6 1.5766 -1.1885 -3.4889 22 7 2.6874 -0.5877 -3.8597 23 14 0.5688 -2.1430 -4.7390 24 1 -0.7916 -1.5548 -4.8312 25 1 1.2299 -2.0705 -6.0668 26 1 0.4669 -3.5619 -4.3131 27 1 -0.3634 0.5084 0.8932 28 1 -0.3634 0.5193 -0.8868 29 1 -0.3633 -1.0277 -0.0063 30 1 1.6029 -1.7252 1.2914 31 1 1.7659 -0.1667 2.1369 32 1 3.9377 -1.3447 2.0671 33 1 4.0059 0.1475 1.0994 34 1 5.9808 -1.1471 0.3149 35 1 7.8621 -3.0725 0.1893 36 1 7.8973 -2.1176 -1.3125 37 1 7.4345 -4.1676 -2.6278 38 1 7.3991 -5.1231 -1.1264 39 1 9.7826 -3.5212 -2.1601 40 1 9.7466 -4.4767 -0.6589 41 1 9.0031 -5.9439 -3.2358 42 1 10.6636 -6.6120 -0.6604 43 1 10.2110 -7.7993 -1.9971 44 1 11.4617 -6.3771 -3.6845 45 1 11.9148 -5.1897 -2.3480 46 1 3.9904 0.0020 -1.4316 47 1 3.6518 -1.5718 -2.1970 48 1 2.9826 -0.6403 -4.7822 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132246708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:25 Heat of formation + Delta-G solvation = -37.220483 kcal Electronic energy + Delta-G solvation = -24222.011090 eV Core-core repulsion = 20890.336834 eV Total energy + Delta-G solvation = -3331.674257 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93634 -39.31073 -38.52324 -35.98543 -34.70379 -34.64545 -32.24709 -31.73760 -29.08758 -27.61183 -26.58859 -24.11242 -23.48727 -23.15233 -22.02865 -21.38384 -21.26598 -20.69328 -18.34177 -17.95991 -17.32371 -16.85722 -16.58854 -16.27929 -15.82223 -15.45456 -15.21724 -15.16739 -14.94706 -14.66563 -14.37761 -14.14287 -13.55733 -13.34842 -13.04255 -12.99475 -12.75845 -12.69628 -12.64626 -12.56622 -12.34854 -12.29973 -12.12900 -11.98459 -11.95128 -11.76164 -11.66272 -11.40487 -11.14335 -11.10726 -10.73675 -10.65250 -10.54081 -10.00679 -8.61913 -7.86310 -5.32552 1.38955 1.44731 1.48766 1.77560 2.30888 2.50460 2.94147 3.30047 3.62751 3.73811 3.85492 3.99344 4.05064 4.07789 4.09824 4.19804 4.25283 4.33307 4.39970 4.43484 4.62643 4.70804 4.73073 4.79435 4.80476 4.82700 4.88609 4.90052 4.95996 5.00471 5.06880 5.10952 5.18781 5.26213 5.28105 5.31546 5.35678 5.36673 5.48952 5.53998 5.55012 5.61597 5.69670 5.81789 6.40895 6.72621 7.15518 7.45280 7.89801 8.39117 9.18658 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.003641 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.268988 B = 7689.404467 C = 9086.712470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.119 4.119 5 C -0.106 4.106 6 C 0.130 3.870 7 H 0.045 0.955 8 N -0.712 5.712 9 C 0.496 3.504 10 O -0.596 6.596 11 C -0.126 4.126 12 C -0.098 4.098 13 C -0.077 4.077 14 C -0.172 4.172 15 C -0.181 4.181 16 C -0.176 4.176 17 C 0.182 3.818 18 N -0.604 5.604 19 C -0.253 4.253 20 H 0.073 0.927 21 C -0.053 4.053 22 N -0.933 5.933 23 Si 0.956 3.044 24 H -0.267 1.267 25 H -0.296 1.296 26 H -0.287 1.287 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.414 0.586 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.105 0.895 46 H -0.002 1.002 47 H 0.038 0.962 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.667 -3.310 12.128 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.023 3.977 7 H 0.064 0.936 8 N -0.363 5.363 9 C 0.285 3.715 10 O -0.476 6.476 11 C -0.166 4.166 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.191 4.191 15 C -0.218 4.218 16 C -0.213 4.213 17 C 0.054 3.946 18 N -0.328 5.328 19 C -0.384 4.384 20 H 0.091 0.909 21 C -0.248 4.248 22 N -0.579 5.579 23 Si 0.784 3.216 24 H -0.192 1.192 25 H -0.222 1.222 26 H -0.214 1.214 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.251 0.749 35 H 0.145 0.855 36 H 0.130 0.870 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.124 0.876 46 H 0.016 0.984 47 H 0.057 0.943 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.202 -3.859 11.602 18.741 hybrid contribution -0.491 -0.287 -1.389 1.501 sum 13.711 -4.146 10.213 17.592 Atomic orbital electron populations 1.21731 0.94801 1.01080 1.01050 1.20813 0.94274 0.93383 0.86759 0.96023 1.21959 0.94797 1.00751 0.98303 1.21637 0.96931 0.99983 0.95875 1.21458 0.80028 0.98714 0.97487 0.93642 1.45958 1.07331 1.27328 1.55721 1.21658 0.92633 0.80382 0.76839 1.90716 1.65624 1.44373 1.46908 1.21708 0.88813 1.01199 1.04865 1.21242 0.96429 0.96634 0.99366 1.21118 0.93681 0.96213 1.00416 1.22372 0.95558 0.98268 1.02858 1.23115 1.04278 0.96076 0.98351 1.23040 0.93960 1.03474 1.00787 1.20744 0.83709 0.95131 0.94975 1.44317 1.02600 1.65684 1.20215 1.19435 0.95543 1.36707 0.86673 0.90937 1.25804 0.99134 1.00854 0.98986 1.70155 1.25830 1.45593 1.16344 0.85507 0.78830 0.78912 0.78302 1.19204 1.22219 1.21371 0.90199 0.94387 0.93650 0.93143 0.88570 0.89625 0.90785 0.74900 0.85456 0.86959 0.94226 0.92907 0.90625 0.89949 0.89500 0.87809 0.89029 0.88704 0.87644 0.98441 0.94346 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 7.95 71.98 0.57 -4.16 16 2 C 0.15 6.17 3.50 44.98 0.16 6.33 16 3 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 4 C -0.12 -3.74 5.37 30.68 0.16 -3.57 16 5 C -0.11 -3.14 5.35 30.62 0.16 -2.98 16 6 C 0.13 5.11 2.61 45.07 0.12 5.23 16 7 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 8 N -0.71 -22.47 5.08 -442.15 -2.25 -24.72 16 9 C 0.50 17.24 7.80 87.66 0.68 17.93 16 10 O -0.60 -28.21 15.64 -3.05 -0.05 -28.25 16 11 C -0.13 -2.80 5.70 29.85 0.17 -2.63 16 12 C -0.10 -2.44 4.46 30.59 0.14 -2.31 16 13 C -0.08 -1.36 5.50 30.59 0.17 -1.19 16 14 C -0.17 -3.27 5.74 -10.79 -0.06 -3.33 16 15 C -0.18 -2.89 10.18 30.60 0.31 -2.58 16 16 C -0.18 -2.67 10.25 30.60 0.31 -2.36 16 17 C 0.18 9.25 4.86 86.36 0.42 9.67 16 18 N -0.60 -31.20 2.99 -675.23 -2.02 -33.22 16 19 C -0.25 -14.49 8.58 84.04 0.72 -13.77 16 20 H 0.07 4.00 6.23 -2.91 -0.02 3.98 16 21 C -0.05 -3.13 4.94 84.86 0.42 -2.71 16 22 N -0.93 -58.78 11.23 21.65 0.24 -58.54 16 23 Si 0.96 48.40 29.58 68.60 2.03 50.42 16 24 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 26 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 27 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.04 1.54 7.67 -2.39 -0.02 1.52 16 29 H 0.04 1.71 7.40 -2.39 -0.02 1.69 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.41 9.23 8.60 -92.71 -0.80 8.43 16 35 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.14 7.87 -2.39 -0.02 1.12 16 41 H 0.09 1.94 8.07 -2.39 -0.02 1.92 16 42 H 0.10 1.42 8.03 -2.39 -0.02 1.40 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.04 2.37 6.15 -2.38 -0.01 2.35 16 48 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -77.89 376.57 2.54 -75.35 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.12 Total: 21.40 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 4.46 Total: -2.44 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -4.02 Total: -116.48 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.05 Total: -28.25 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.03 Total: 50.42 kcal Total: -77.89 2.54 -75.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132246708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.131 kcal (2) G-P(sol) polarization free energy of solvation -77.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds