Wall clock time and date at job start Fri Apr 10 2020 20:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46720 * 2 1 4 4 C 1.50695 * 109.47331 * 239.99967 * 2 1 3 5 5 O 1.21288 * 119.99348 * 275.55909 * 4 2 1 6 6 N 1.34764 * 120.00682 * 95.55495 * 4 2 1 7 7 C 1.47429 * 125.64555 * 355.58049 * 6 4 2 8 8 C 1.54918 * 104.83085 * 204.09398 * 7 6 4 9 9 C 1.55157 * 101.57869 * 322.98509 * 8 7 6 10 10 H 1.09003 * 110.87356 * 277.07246 * 9 8 7 11 11 N 1.46502 * 110.71948 * 153.87044 * 9 8 7 12 12 C 1.46498 * 119.99675 * 306.47689 * 11 9 8 13 13 C 1.36933 * 120.00042 * 126.47877 * 11 9 8 14 14 H 1.07996 * 120.00292 * 343.76665 * 13 11 9 15 15 C 1.38816 * 120.00000 * 164.04250 * 13 11 9 16 16 N 1.31623 * 119.99823 * 343.55207 * 15 13 11 17 17 Si 1.86791 * 120.00144 * 163.54622 * 15 13 11 18 18 H 1.48505 * 109.47072 * 60.00441 * 17 15 13 19 19 H 1.48497 * 109.47198 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47373 * 300.00330 * 17 15 13 21 21 C 1.47019 * 125.65349 * 175.53559 * 6 4 2 22 22 C 1.53004 * 109.46707 * 119.99522 * 2 1 3 23 23 C 1.54268 * 110.03179 * 297.16681 * 22 2 1 24 24 C 1.54887 * 104.19242 * 217.10773 * 23 22 2 25 25 C 1.54886 * 102.75245 * 37.94358 * 24 23 22 26 26 C 1.53878 * 110.02954 * 180.02562 * 22 2 1 27 27 H 1.08998 * 109.47631 * 305.89686 * 1 2 3 28 28 H 1.09006 * 109.46793 * 65.89350 * 1 2 3 29 29 H 1.08996 * 109.47187 * 185.88936 * 1 2 3 30 30 H 1.09001 * 110.36455 * 322.92503 * 7 6 4 31 31 H 1.08992 * 110.37344 * 85.25180 * 7 6 4 32 32 H 1.09003 * 110.99805 * 204.91665 * 8 7 6 33 33 H 1.08995 * 111.00952 * 81.06233 * 8 7 6 34 34 H 1.09000 * 109.47239 * 264.74117 * 12 11 9 35 35 H 1.08998 * 109.47495 * 24.73859 * 12 11 9 36 36 H 1.08996 * 109.47295 * 144.74160 * 12 11 9 37 37 H 0.96991 * 119.99967 * 179.97438 * 16 15 13 38 38 H 1.08993 * 109.88616 * 59.55595 * 21 6 4 39 39 H 1.08999 * 110.01139 * 298.46349 * 21 6 4 40 40 H 1.08996 * 110.01340 * 58.61352 * 22 2 1 41 41 H 1.09004 * 110.48644 * 335.78425 * 23 22 2 42 42 H 1.08994 * 110.48513 * 98.42866 * 23 22 2 43 43 H 1.08997 * 110.75861 * 279.62649 * 24 23 22 44 44 H 1.09005 * 110.75503 * 156.25698 * 24 23 22 45 45 H 1.09000 * 110.49042 * 203.37812 * 25 24 23 46 46 H 1.09004 * 110.48725 * 80.73296 * 25 24 23 47 47 H 1.09000 * 110.02637 * 238.57509 * 26 22 2 48 48 H 1.09007 * 110.03425 * 359.94690 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.1386 -1.9186 -1.2321 6 7 2.3636 -0.0033 -2.3288 7 6 2.1978 1.4520 -2.4961 8 6 2.1163 1.6683 -4.0280 9 6 3.1332 0.6169 -4.5455 10 1 4.1507 1.0052 -4.4993 11 7 2.8003 0.2018 -5.9104 12 6 1.4549 -0.2888 -6.2191 13 6 3.7466 0.2724 -6.8976 14 1 4.6376 0.8646 -6.7502 15 6 3.5581 -0.4127 -8.0901 16 7 2.6596 -1.3718 -8.1631 17 14 4.5793 0.0267 -9.5912 18 1 6.0189 -0.1734 -9.2864 19 1 4.1879 -0.8444 -10.7284 20 1 4.3426 1.4475 -9.9524 21 6 2.9509 -0.5553 -3.5584 22 6 2.0399 -0.7212 1.2494 23 6 1.5921 0.0362 2.5165 24 6 2.7933 -0.0999 3.4848 25 6 4.0121 0.0244 2.5371 26 6 3.5786 -0.7282 1.2628 27 1 -0.3634 0.6025 0.8324 28 1 -0.3633 0.4198 -0.9381 29 1 -0.3633 -1.0222 0.1054 30 1 1.2780 1.7866 -2.0164 31 1 3.0562 1.9817 -2.0834 32 1 2.4271 2.6779 -4.2970 33 1 1.1135 1.4579 -4.3996 34 1 1.4445 -1.3776 -6.1681 35 1 0.7460 0.1155 -5.4966 36 1 1.1730 0.0305 -7.2225 37 1 2.5276 -1.8502 -8.9964 38 1 2.2808 -1.3003 -3.9873 39 1 3.9174 -1.0089 -3.3391 40 1 1.6614 -1.7431 1.2708 41 1 1.4038 1.0852 2.2874 42 1 0.7031 -0.4274 2.9439 43 1 2.7844 -1.0724 3.9770 44 1 2.7911 0.7059 4.2188 45 1 4.8892 -0.4480 2.9795 46 1 4.2146 1.0714 2.3113 47 1 3.9470 -1.7536 1.2914 48 1 3.9621 -0.2186 0.3787 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972700859.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:46 Heat of formation + Delta-G solvation = -27.500477 kcal Electronic energy + Delta-G solvation = -24891.723973 eV Core-core repulsion = 21560.471207 eV Total energy + Delta-G solvation = -3331.252766 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.22192 -38.40852 -37.09788 -34.78898 -33.35350 -31.53117 -29.67967 -28.94202 -28.11816 -27.56393 -26.06761 -24.54372 -22.74371 -22.30966 -20.76743 -20.08069 -19.17837 -18.52618 -17.05312 -17.01183 -16.07975 -15.70092 -15.29366 -14.93227 -14.63614 -14.18652 -13.54428 -13.47521 -13.37428 -13.28763 -12.84095 -12.61915 -12.58196 -12.28847 -12.12282 -11.77006 -11.61353 -11.48780 -11.23859 -11.18218 -11.16555 -10.91523 -10.81875 -10.79671 -10.67607 -10.57184 -10.43246 -10.40171 -10.29597 -9.89078 -9.80033 -9.37687 -8.55345 -8.24387 -6.89248 -5.76196 -3.17629 2.91562 3.28650 3.37998 3.43877 3.44719 4.37013 4.46025 4.47595 4.52712 4.75488 4.93647 5.01829 5.10132 5.23413 5.28685 5.31117 5.35137 5.47765 5.49959 5.50809 5.52492 5.57701 5.61095 5.67687 5.69854 5.76686 5.79873 5.88270 5.92016 5.98572 5.99912 6.05481 6.14654 6.22880 6.33593 6.35671 6.37877 6.56064 6.70301 6.83452 6.87031 7.38683 7.68792 7.79518 7.89282 8.31725 8.49331 9.18272 9.81948 10.28345 11.28926 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.031757 B = 0.003238 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.484253 B = 8644.694068 C = 8819.891635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.528 3.472 5 O -0.545 6.545 6 N -0.614 5.614 7 C 0.101 3.899 8 C -0.153 4.153 9 C 0.173 3.827 10 H 0.077 0.923 11 N -0.587 5.587 12 C 0.161 3.839 13 C -0.260 4.260 14 H 0.073 0.927 15 C 0.001 3.999 16 N -0.906 5.906 17 Si 0.907 3.093 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.086 3.914 22 C -0.075 4.075 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.119 4.119 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.001 0.999 36 H 0.050 0.950 37 H 0.254 0.746 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.881 7.145 20.421 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.105 0.895 4 C 0.316 3.684 5 O -0.422 6.422 6 N -0.348 5.348 7 C -0.022 4.022 8 C -0.193 4.193 9 C 0.063 3.937 10 H 0.096 0.904 11 N -0.308 5.308 12 C 0.017 3.983 13 C -0.390 4.390 14 H 0.090 0.910 15 C -0.197 4.197 16 N -0.550 5.550 17 Si 0.737 3.263 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.211 1.211 21 C -0.039 4.039 22 C -0.093 4.093 23 C -0.155 4.155 24 C -0.163 4.163 25 C -0.162 4.162 26 C -0.157 4.157 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.019 0.981 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.891 6.319 20.261 21.419 hybrid contribution 0.556 0.114 -0.972 1.126 sum -2.334 6.432 19.289 20.467 Atomic orbital electron populations 1.21722 0.92873 1.02928 1.02264 1.21424 0.97539 1.00164 0.92931 0.89520 1.20263 0.77446 0.87295 0.83353 1.90680 1.54276 1.14076 1.83179 1.48613 1.62107 1.08820 1.15237 1.22311 1.00570 0.81211 0.98112 1.23346 1.02510 1.01003 0.92453 1.21321 0.96658 0.90935 0.84811 0.90435 1.43977 1.09463 1.74942 1.02389 1.20828 0.83038 0.97283 0.97132 1.19224 1.01567 1.24326 0.93844 0.90967 1.24919 0.99061 0.96518 0.99189 1.70120 1.36824 1.22225 1.25875 0.86299 0.79686 0.77762 0.82594 1.20934 1.21644 1.21086 1.22902 0.97807 0.99425 0.83778 1.21661 0.95434 0.99911 0.92335 1.22442 0.97898 1.00314 0.94859 1.22493 0.94892 1.01490 0.97383 1.22359 0.97766 1.00358 0.95715 1.22182 0.94976 1.00871 0.97686 0.91525 0.92263 0.91831 0.91394 0.91785 0.90411 0.90379 0.95451 0.98062 0.93136 0.93588 0.91062 0.92431 0.89939 0.91437 0.91612 0.91575 0.91757 0.91894 0.91780 0.91599 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.87 37.16 0.33 -1.12 16 2 C -0.10 -1.16 1.47 -91.77 -0.13 -1.30 16 3 H 0.09 0.89 7.06 -51.93 -0.37 0.52 16 4 C 0.53 8.64 5.73 -10.99 -0.06 8.58 16 5 O -0.54 -11.11 16.58 5.55 0.09 -11.01 16 6 N -0.61 -10.07 3.33 -170.52 -0.57 -10.63 16 7 C 0.10 1.32 6.17 -2.52 -0.02 1.31 16 8 C -0.15 -2.39 6.59 -24.58 -0.16 -2.55 16 9 C 0.17 3.41 3.45 -66.09 -0.23 3.18 16 10 H 0.08 1.50 7.89 -51.93 -0.41 1.09 16 11 N -0.59 -14.35 2.94 -171.39 -0.50 -14.86 16 12 C 0.16 3.96 7.80 59.85 0.47 4.42 16 13 C -0.26 -7.01 9.69 -15.06 -0.15 -7.15 16 14 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 15 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 16 N -0.91 -26.33 10.50 55.49 0.58 -25.75 16 17 Si 0.91 21.63 29.58 -169.99 -5.03 16.61 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.09 1.69 6.51 -3.06 -0.02 1.67 16 22 C -0.07 -0.83 2.16 -89.50 -0.19 -1.02 16 23 C -0.12 -0.98 5.42 -25.07 -0.14 -1.12 16 24 C -0.13 -0.99 6.91 -24.74 -0.17 -1.16 16 25 C -0.12 -1.11 6.83 -25.10 -0.17 -1.28 16 26 C -0.12 -1.37 5.95 -25.64 -0.15 -1.52 16 27 H 0.07 0.53 7.47 -51.93 -0.39 0.14 16 28 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.74 7.61 -51.93 -0.40 0.34 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.31 6.05 -51.93 -0.31 0.99 16 34 H 0.03 0.74 7.45 -51.93 -0.39 0.35 16 35 H 0.00 0.02 6.03 -51.93 -0.31 -0.29 16 36 H 0.05 1.33 6.95 -51.93 -0.36 0.97 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.07 1.63 7.13 -51.93 -0.37 1.26 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 41 H 0.07 0.51 7.75 -51.93 -0.40 0.11 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.06 0.78 7.10 -51.92 -0.37 0.41 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -31.04 364.92 -9.49 -40.53 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.68 Total: -1.27 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.88 Total: 0.89 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.49 Total: -51.24 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.04 -9.49 -40.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972700859.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.030 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds