Wall clock time and date at job start Fri Apr 10 2020 20:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47579 * 2 1 4 4 C 1.50706 * 109.46887 * 119.99950 * 2 1 3 5 5 O 1.21277 * 120.00023 * 119.99615 * 4 2 1 6 6 N 1.34778 * 119.99921 * 299.99967 * 4 2 1 7 7 C 1.47425 * 125.64605 * 0.03676 * 6 4 2 8 8 C 1.54911 * 104.82945 * 204.09468 * 7 6 4 9 9 C 1.55151 * 101.58539 * 322.99253 * 8 7 6 10 10 H 1.08998 * 110.87465 * 277.06650 * 9 8 7 11 11 N 1.46504 * 110.72362 * 153.86328 * 9 8 7 12 12 C 1.46505 * 119.99885 * 306.48123 * 11 9 8 13 13 C 1.36927 * 120.00159 * 126.47738 * 11 9 8 14 14 H 1.08006 * 120.00255 * 336.68808 * 13 11 9 15 15 C 1.38812 * 120.00187 * 156.95928 * 13 11 9 16 16 N 1.31620 * 120.00166 * 156.24217 * 15 13 11 17 17 Si 1.86797 * 119.99833 * 336.24503 * 15 13 11 18 18 H 1.48500 * 109.47571 * 84.78163 * 17 15 13 19 19 H 1.48508 * 109.47407 * 204.78539 * 17 15 13 20 20 H 1.48507 * 109.47081 * 324.78447 * 17 15 13 21 21 C 1.47020 * 125.64781 * 180.02562 * 6 4 2 22 22 C 1.52997 * 109.47098 * 239.99378 * 2 1 3 23 23 C 1.54258 * 110.03343 * 177.16854 * 22 2 1 24 24 C 1.54884 * 104.19782 * 217.10977 * 23 22 2 25 25 C 1.54892 * 102.75061 * 37.94085 * 24 23 22 26 26 C 1.53878 * 110.02747 * 60.00529 * 22 2 1 27 27 H 1.09004 * 109.46869 * 59.99703 * 1 2 3 28 28 H 1.08994 * 109.47480 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46991 * 300.00549 * 1 2 3 30 30 H 1.08995 * 110.37053 * 322.93656 * 7 6 4 31 31 H 1.08999 * 110.36312 * 85.15138 * 7 6 4 32 32 H 1.09000 * 111.00451 * 204.91938 * 8 7 6 33 33 H 1.08998 * 111.00209 * 81.07184 * 8 7 6 34 34 H 1.08997 * 109.46957 * 274.35355 * 12 11 9 35 35 H 1.09000 * 109.46747 * 34.35059 * 12 11 9 36 36 H 1.08994 * 109.46947 * 154.34450 * 12 11 9 37 37 H 0.97000 * 119.99451 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.88431 * 59.55686 * 21 6 4 39 39 H 1.08994 * 110.01024 * 298.45991 * 21 6 4 40 40 H 1.08998 * 110.01909 * 298.61886 * 22 2 1 41 41 H 1.09000 * 110.48893 * 335.78918 * 23 22 2 42 42 H 1.09000 * 110.48924 * 98.42973 * 23 22 2 43 43 H 1.08999 * 110.75854 * 279.62650 * 24 23 22 44 44 H 1.09002 * 110.91751 * 156.33262 * 24 23 22 45 45 H 1.08996 * 110.48575 * 203.37849 * 25 24 23 46 46 H 1.09006 * 110.48170 * 80.73881 * 25 24 23 47 47 H 1.09006 * 110.02742 * 238.57052 * 26 22 2 48 48 H 1.08994 * 110.03603 * 359.97438 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 0.8703 0.9316 2.7336 8 6 1.2941 1.3917 4.1508 9 6 1.5388 0.0332 4.8592 10 1 0.6028 -0.3874 5.2267 11 7 2.5015 0.1850 5.9531 12 6 3.8078 0.7979 5.6996 13 6 2.1803 -0.2459 7.2125 14 1 1.1444 -0.3415 7.5028 15 6 3.1860 -0.5545 8.1181 16 7 2.9434 -0.5115 9.4110 17 14 4.8839 -1.0308 7.5018 18 1 5.6800 0.1964 7.2461 19 1 5.5679 -1.8601 8.5264 20 1 4.7536 -1.8074 6.2427 21 6 2.1266 -0.8428 3.7328 22 6 2.0400 -0.7214 -1.2491 23 6 3.5809 -0.6672 -1.2986 24 6 3.9068 -0.4941 -2.8028 25 6 2.7854 0.4577 -3.2882 26 6 1.5343 -0.0060 -2.5142 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.0684 1.7173 2.0046 31 1 -0.1854 0.6606 2.7208 32 1 0.4923 1.9471 4.6374 33 1 2.2091 1.9827 4.1124 34 1 4.5035 0.0371 5.3457 35 1 3.7035 1.5752 4.9426 36 1 4.1880 1.2374 6.6216 37 1 3.6462 -0.7275 10.0438 38 1 3.2146 -0.8505 3.7983 39 1 1.7432 -1.8597 3.8160 40 1 1.7019 -1.7576 -1.2458 41 1 3.9512 0.1841 -0.7275 42 1 4.0076 -1.5961 -0.9202 43 1 3.8532 -1.4508 -3.3223 44 1 4.8871 -0.0370 -2.9385 45 1 2.6317 0.3498 -4.3619 46 1 3.0274 1.4908 -3.0385 47 1 0.9515 -0.6955 -3.1251 48 1 0.9252 0.8547 -2.2382 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972700860.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:48 Heat of formation + Delta-G solvation = -20.541457 kcal Electronic energy + Delta-G solvation = -25004.586702 eV Core-core repulsion = 21673.635702 eV Total energy + Delta-G solvation = -3330.951000 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.36481 -38.53601 -37.19954 -35.07356 -33.50557 -31.72744 -30.16108 -28.89918 -28.53599 -27.45912 -26.26533 -24.88573 -23.04150 -22.27277 -20.74564 -19.96159 -19.35848 -18.93799 -17.07968 -17.05439 -16.18807 -15.85338 -15.34383 -15.17955 -14.90425 -14.09820 -13.85886 -13.56468 -13.46207 -13.40086 -13.30108 -12.88118 -12.54686 -12.33059 -12.25569 -12.15917 -11.94355 -11.58313 -11.52293 -11.29915 -11.14466 -11.05838 -10.98802 -10.88300 -10.76937 -10.62177 -10.51333 -10.29015 -10.22537 -10.00907 -9.54826 -9.44331 -8.65667 -8.37462 -7.13335 -6.01478 -3.35713 2.82616 3.16914 3.32908 3.49454 3.53250 4.33425 4.45061 4.49978 4.50826 4.70557 4.76980 4.91739 4.94421 5.01471 5.11460 5.27615 5.31031 5.33793 5.37320 5.46197 5.46662 5.51043 5.58098 5.63318 5.63937 5.70040 5.73542 5.78431 5.83921 5.86544 5.97207 6.03426 6.08724 6.15714 6.19644 6.26674 6.31087 6.35087 6.38774 6.49518 6.62060 6.64207 6.76758 7.76341 7.85398 8.25157 8.37894 8.86212 9.65961 9.96747 11.13938 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.003653 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.182215 B = 7663.065239 C = 8245.077499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 H 0.093 0.907 4 C 0.527 3.473 5 O -0.542 6.542 6 N -0.614 5.614 7 C 0.101 3.899 8 C -0.154 4.154 9 C 0.174 3.826 10 H 0.088 0.912 11 N -0.595 5.595 12 C 0.100 3.900 13 C -0.270 4.270 14 H 0.089 0.911 15 C 0.029 3.971 16 N -0.902 5.902 17 Si 0.884 3.116 18 H -0.286 1.286 19 H -0.304 1.304 20 H -0.277 1.277 21 C 0.084 3.916 22 C -0.071 4.071 23 C -0.112 4.112 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.122 4.122 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.009 0.991 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.264 0.736 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.648 5.097 -23.268 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.121 4.121 3 H 0.111 0.889 4 C 0.315 3.685 5 O -0.419 6.419 6 N -0.348 5.348 7 C -0.022 4.022 8 C -0.193 4.193 9 C 0.064 3.936 10 H 0.106 0.894 11 N -0.316 5.316 12 C -0.045 4.045 13 C -0.398 4.398 14 H 0.107 0.893 15 C -0.171 4.171 16 N -0.544 5.544 17 Si 0.715 3.285 18 H -0.213 1.213 19 H -0.232 1.232 20 H -0.203 1.203 21 C -0.041 4.041 22 C -0.090 4.090 23 C -0.150 4.150 24 C -0.165 4.165 25 C -0.162 4.162 26 C -0.159 4.159 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.026 0.974 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.186 4.507 -23.169 23.971 hybrid contribution 1.070 -0.352 -0.172 1.140 sum -3.116 4.156 -23.340 23.911 Atomic orbital electron populations 1.21987 0.93196 1.02911 1.02963 1.21402 0.97349 1.00424 0.92880 0.88916 1.20318 0.80226 0.84601 0.83369 1.90676 1.38380 1.26691 1.86160 1.48553 1.50971 1.29553 1.05700 1.22409 0.94667 0.87381 0.97751 1.23307 1.02332 0.99995 0.93698 1.21415 0.93804 0.91760 0.86610 0.89395 1.44163 1.13535 1.68137 1.05734 1.21409 0.87368 0.95493 1.00236 1.18911 0.94390 1.40855 0.85605 0.89316 1.25163 0.97808 0.99174 0.94968 1.69867 1.34011 1.50014 1.00551 0.87071 0.85382 0.78452 0.77641 1.21299 1.23186 1.20254 1.22842 1.00779 0.98094 0.82378 1.21565 0.95880 0.99502 0.92010 1.22371 0.94789 1.02529 0.95309 1.22536 0.98164 0.99326 0.96514 1.22362 0.95280 0.99307 0.99287 1.22278 0.97621 1.00064 0.95941 0.91403 0.92190 0.91362 0.91192 0.91258 0.89932 0.90467 0.97359 0.94494 0.91793 0.92626 0.91528 0.91917 0.90465 0.92216 0.90633 0.91711 0.91884 0.92006 0.91812 0.91831 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.74 37.16 0.32 -1.02 16 2 C -0.10 -1.08 1.37 -91.77 -0.13 -1.21 16 3 H 0.09 0.91 7.82 -51.93 -0.41 0.51 16 4 C 0.53 8.04 6.96 -10.98 -0.08 7.97 16 5 O -0.54 -10.29 14.87 5.56 0.08 -10.21 16 6 N -0.61 -9.31 3.32 -170.52 -0.57 -9.88 16 7 C 0.10 1.20 5.14 -2.53 -0.01 1.18 16 8 C -0.15 -2.20 6.61 -24.58 -0.16 -2.36 16 9 C 0.17 3.20 3.45 -66.09 -0.23 2.98 16 10 H 0.09 1.62 7.93 -51.93 -0.41 1.21 16 11 N -0.59 -13.64 2.74 -171.39 -0.47 -14.10 16 12 C 0.10 2.16 7.38 59.85 0.44 2.60 16 13 C -0.27 -7.33 9.99 -15.06 -0.15 -7.48 16 14 H 0.09 2.54 8.03 -52.48 -0.42 2.12 16 15 C 0.03 0.82 5.16 -17.43 -0.09 0.73 16 16 N -0.90 -27.31 13.97 55.49 0.78 -26.54 16 17 Si 0.88 22.65 24.04 -169.99 -4.09 18.56 16 18 H -0.29 -6.99 6.36 56.52 0.36 -6.63 16 19 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 20 H -0.28 -7.18 6.91 56.52 0.39 -6.79 16 21 C 0.08 1.54 6.51 -3.06 -0.02 1.52 16 22 C -0.07 -0.76 2.11 -89.51 -0.19 -0.94 16 23 C -0.11 -1.31 5.18 -25.08 -0.13 -1.44 16 24 C -0.13 -1.18 6.91 -24.74 -0.17 -1.35 16 25 C -0.12 -0.99 6.83 -25.07 -0.17 -1.16 16 26 C -0.12 -0.99 5.91 -25.61 -0.15 -1.14 16 27 H 0.07 0.47 6.48 -51.93 -0.34 0.13 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.57 4.99 -51.93 -0.26 0.31 16 30 H 0.07 0.67 7.36 -51.93 -0.38 0.29 16 31 H 0.07 0.71 7.07 -51.93 -0.37 0.34 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.15 6.00 -51.93 -0.31 0.84 16 34 H 0.01 0.19 5.38 -51.93 -0.28 -0.09 16 35 H 0.04 0.68 5.99 -51.93 -0.31 0.37 16 36 H 0.06 1.49 5.76 -51.93 -0.30 1.19 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.07 1.39 6.90 -51.93 -0.36 1.03 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 0.93 8.08 -51.93 -0.42 0.52 16 41 H 0.06 0.72 7.84 -51.93 -0.41 0.32 16 42 H 0.07 1.04 7.45 -51.93 -0.39 0.66 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.49 6.33 -51.93 -0.33 0.16 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -31.62 350.42 -8.15 -39.77 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.26 Total: -1.75 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -0.91 Total: -1.13 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.26 Total: -50.52 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.09 Total: 18.56 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.62 -8.15 -39.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972700860.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.228 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds