Wall clock time and date at job start Fri Apr 10 2020 20:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 C 1.52997 * 109.47380 * 239.99954 * 2 1 3 5 5 C 1.53002 * 109.47380 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47098 * 59.99423 * 5 4 2 7 7 C 1.53002 * 109.47150 * 300.00516 * 6 5 4 8 8 C 1.52997 * 109.47422 * 60.00056 * 7 6 5 9 9 H 1.08997 * 109.47016 * 60.00031 * 8 7 6 10 10 C 1.52993 * 109.47014 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.47477 * 294.99705 * 10 8 7 12 12 O 1.21279 * 119.99559 * 0.02562 * 11 10 8 13 13 N 1.34772 * 120.00349 * 179.97438 * 11 10 8 14 14 C 1.46498 * 120.00309 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.84793 * 336.19873 * 14 13 11 16 16 C 1.53959 * 113.74220 * 107.40377 * 14 13 11 17 17 C 1.53781 * 87.01918 * 139.94740 * 16 14 13 18 18 H 1.09001 * 113.61536 * 89.22969 * 17 16 14 19 19 N 1.46498 * 113.61116 * 220.04907 * 17 16 14 20 20 C 1.36943 * 119.99752 * 253.85788 * 19 17 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 17 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 17 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 C 1.53776 * 113.61677 * 205.00218 * 14 13 11 29 29 H 1.09000 * 109.47192 * 299.99960 * 1 2 3 30 30 H 1.08997 * 109.47153 * 60.00751 * 1 2 3 31 31 H 1.08997 * 109.46710 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46835 * 299.99477 * 4 2 1 33 33 H 1.08997 * 109.47553 * 59.99540 * 4 2 1 34 34 H 1.08992 * 109.47516 * 180.02562 * 5 4 2 35 35 H 1.09002 * 109.46811 * 300.00046 * 5 4 2 36 36 H 1.08997 * 109.47233 * 60.00451 * 6 5 4 37 37 H 1.09001 * 109.47100 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.46833 * 299.99178 * 7 6 5 39 39 H 1.09004 * 109.46831 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.47261 * 174.99920 * 10 8 7 41 41 H 1.09004 * 109.47445 * 55.00036 * 10 8 7 42 42 H 0.97009 * 120.00112 * 0.02562 * 13 11 10 43 43 H 1.08995 * 113.61644 * 25.42418 * 16 14 13 44 44 H 1.09006 * 113.66662 * 254.47389 * 16 14 13 45 45 H 0.97001 * 120.00384 * 74.14144 * 19 17 16 46 46 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 47 47 H 1.09000 * 113.61546 * 105.38674 * 28 14 13 48 48 H 1.08999 * 113.61714 * 334.48342 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7218 -1.2489 6 6 4.0796 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2496 8 6 2.0395 -0.7215 1.2493 9 1 1.6759 -1.7490 1.2492 10 6 1.5295 -0.0008 2.4988 11 6 1.9276 -0.7798 3.7258 12 8 2.5577 -1.8098 3.6121 13 7 1.5844 -0.3314 4.9496 14 6 1.9709 -1.0890 6.1424 15 1 2.1462 -2.1446 5.9349 16 6 3.0961 -0.4278 6.9591 17 6 2.3249 -0.8569 8.2184 18 1 2.5962 -1.8489 8.5797 19 7 2.3236 0.1540 9.2786 20 6 3.0964 -0.0238 10.3951 21 1 3.7102 -0.9071 10.4919 22 6 3.0908 0.9313 11.4024 23 7 2.3423 2.0076 11.2846 24 14 4.1454 0.6892 12.9250 25 1 4.8883 -0.5918 12.8140 26 1 5.1104 1.8119 13.0425 27 1 3.2765 0.6554 14.1288 28 6 1.0542 -0.8430 7.3523 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6768 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.9335 -1.2352 -2.1390 35 1 3.9338 0.3058 -1.2486 36 1 3.7159 -2.4708 0.0003 37 1 5.1696 -1.4433 0.0009 38 1 3.9333 0.3056 1.2498 39 1 3.9328 -1.2358 2.1397 40 1 0.4432 0.0779 2.4550 41 1 1.9644 0.9977 2.5453 42 1 1.0808 0.4927 5.0405 43 1 3.1530 0.6529 6.8289 44 1 4.0628 -0.9196 6.8502 45 1 1.7722 0.9473 9.1918 46 1 2.3386 2.6752 11.9883 47 1 0.3748 -1.6695 7.5605 48 1 0.5517 0.1240 7.3299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023151925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:23 Heat of formation + Delta-G solvation = -43.604222 kcal Electronic energy + Delta-G solvation = -23770.719610 eV Core-core repulsion = 20438.768533 eV Total energy + Delta-G solvation = -3331.951077 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26823 -38.96802 -37.68666 -34.06081 -33.35020 -32.63359 -32.11012 -29.91063 -27.95471 -26.16955 -25.12151 -24.41923 -22.78229 -21.80823 -21.08810 -20.24119 -19.87460 -19.16466 -17.19643 -16.85633 -16.15674 -15.41644 -15.23411 -14.72267 -14.67268 -14.51935 -14.32913 -14.10246 -13.81959 -13.08853 -13.05151 -12.94068 -12.62060 -12.26302 -12.19757 -12.01145 -11.91537 -11.70706 -11.65029 -11.26210 -11.15273 -11.01157 -10.94191 -10.63666 -10.58513 -10.48444 -10.38589 -10.21581 -10.12883 -9.99966 -9.67167 -9.41341 -8.91930 -8.69324 -6.99195 -5.81386 -3.10098 2.75544 3.34910 3.41399 3.47749 3.49612 4.40940 4.46603 4.52285 4.57926 4.79912 4.86788 4.98730 5.04546 5.14074 5.16926 5.24134 5.26778 5.32866 5.37155 5.38871 5.43935 5.47313 5.53020 5.58124 5.59696 5.72497 5.82040 5.86248 5.89249 5.95414 6.00813 6.03862 6.07315 6.12767 6.15778 6.24877 6.31186 6.38171 6.38697 6.55499 6.61644 6.78371 7.07461 7.68508 7.69503 8.37085 8.38441 9.48666 10.05455 10.39994 11.41152 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.033991 B = 0.002434 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.539286 B =11502.225214 C =11800.770209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.062 4.062 9 H 0.077 0.923 10 C -0.143 4.143 11 C 0.510 3.490 12 O -0.543 6.543 13 N -0.717 5.717 14 C 0.117 3.883 15 H 0.108 0.892 16 C -0.175 4.175 17 C 0.168 3.832 18 H 0.078 0.922 19 N -0.711 5.711 20 C -0.242 4.242 21 H 0.073 0.927 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.158 4.158 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.399 0.601 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.065 0.935 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 -3.473 -25.310 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.081 4.081 9 H 0.095 0.905 10 C -0.183 4.183 11 C 0.297 3.703 12 O -0.421 6.421 13 N -0.366 5.366 14 C 0.012 3.988 15 H 0.126 0.874 16 C -0.218 4.218 17 C 0.056 3.944 18 H 0.096 0.904 19 N -0.349 5.349 20 C -0.374 4.374 21 H 0.091 0.909 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.198 4.198 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.233 0.767 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.065 -4.270 -25.204 25.746 hybrid contribution 0.112 0.774 0.891 1.186 sum -2.953 -3.496 -24.312 24.739 Atomic orbital electron populations 1.21926 0.95421 1.01920 1.01635 1.21182 0.95277 0.99591 0.94622 0.91224 1.21564 0.95598 1.00656 0.97160 1.21556 0.95635 1.00671 0.97927 1.21498 0.99985 0.99530 0.94446 1.21719 0.94631 1.00429 0.99073 1.20902 0.95978 0.99615 0.91638 0.90466 1.21862 1.02942 1.00353 0.93104 1.20697 0.79114 0.85732 0.84761 1.90646 1.39896 1.24859 1.86663 1.46109 1.57297 1.27316 1.05915 1.22488 0.97342 0.96796 0.82124 0.87438 1.24343 0.97761 1.00886 0.98770 1.21356 0.92269 0.93936 0.86888 0.90364 1.42367 1.52593 1.21901 1.18035 1.19363 1.18467 1.04216 0.95313 0.90944 1.24771 1.00276 0.97008 0.98924 1.69670 1.43136 1.10888 1.34447 0.86104 0.79617 0.77313 0.83091 1.20475 1.21844 1.21832 1.23836 0.98612 1.01885 0.95480 0.92348 0.92824 0.92650 0.92021 0.92232 0.92389 0.92197 0.92067 0.92323 0.92786 0.89744 0.88815 0.89099 0.76749 0.90284 0.92340 0.78115 0.93512 0.91581 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.85 37.16 0.33 -0.69 16 2 C -0.09 -0.67 2.25 -90.62 -0.20 -0.87 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.11 -0.82 5.20 -26.73 -0.14 -0.96 16 5 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 6 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 7 C -0.12 -1.27 4.94 -26.73 -0.13 -1.40 16 8 C -0.06 -0.59 1.36 -90.62 -0.12 -0.71 16 9 H 0.08 0.86 7.95 -51.93 -0.41 0.44 16 10 C -0.14 -1.31 4.96 -27.89 -0.14 -1.45 16 11 C 0.51 6.58 7.55 -10.99 -0.08 6.49 16 12 O -0.54 -8.88 13.57 5.56 0.08 -8.81 16 13 N -0.72 -9.00 5.36 -52.93 -0.28 -9.28 16 14 C 0.12 1.76 4.24 -67.03 -0.28 1.47 16 15 H 0.11 1.70 7.47 -51.93 -0.39 1.31 16 16 C -0.18 -3.08 7.70 -25.82 -0.20 -3.28 16 17 C 0.17 3.28 4.47 -67.12 -0.30 2.98 16 18 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 19 N -0.71 -17.53 5.41 -52.63 -0.28 -17.82 16 20 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 24 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 28 C -0.16 -2.48 7.58 -25.92 -0.20 -2.68 16 29 H 0.06 0.37 6.32 -51.93 -0.33 0.04 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 40 H 0.09 0.70 6.17 -51.93 -0.32 0.38 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.40 4.11 8.73 -40.82 -0.36 3.75 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.38 9.98 7.91 -40.82 -0.32 9.66 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -31.01 371.51 -9.97 -40.98 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -8.74 Total: 9.97 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.03 Total: -10.75 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.16 Total: -54.27 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.01 -9.97 -40.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023151925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.621 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds