Wall clock time and date at job start Fri Apr 10 2020 20:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 C 1.52997 * 109.47380 * 239.99954 * 2 1 3 5 5 C 1.53002 * 109.47380 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47098 * 59.99423 * 5 4 2 7 7 C 1.53002 * 109.47150 * 300.00516 * 6 5 4 8 8 C 1.52997 * 109.47422 * 60.00056 * 7 6 5 9 9 H 1.08997 * 109.47016 * 60.00031 * 8 7 6 10 10 C 1.52993 * 109.47014 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.47477 * 294.99705 * 10 8 7 12 12 O 1.21279 * 119.99559 * 0.02562 * 11 10 8 13 13 N 1.34772 * 120.00349 * 179.97438 * 11 10 8 14 14 C 1.46498 * 120.00309 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.84793 * 336.19873 * 14 13 11 16 16 C 1.53959 * 113.74220 * 107.40377 * 14 13 11 17 17 C 1.53781 * 87.01918 * 139.94740 * 16 14 13 18 18 H 1.09001 * 113.61536 * 89.22969 * 17 16 14 19 19 N 1.46498 * 113.61116 * 220.04907 * 17 16 14 20 20 C 1.36943 * 119.99752 * 253.85788 * 19 17 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 17 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 17 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 C 1.53776 * 113.61677 * 205.00218 * 14 13 11 29 29 H 1.09000 * 109.47192 * 299.99960 * 1 2 3 30 30 H 1.08997 * 109.47153 * 60.00751 * 1 2 3 31 31 H 1.08997 * 109.46710 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46835 * 299.99477 * 4 2 1 33 33 H 1.08997 * 109.47553 * 59.99540 * 4 2 1 34 34 H 1.08992 * 109.47516 * 180.02562 * 5 4 2 35 35 H 1.09002 * 109.46811 * 300.00046 * 5 4 2 36 36 H 1.08997 * 109.47233 * 60.00451 * 6 5 4 37 37 H 1.09001 * 109.47100 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.46833 * 299.99178 * 7 6 5 39 39 H 1.09004 * 109.46831 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.47261 * 174.99920 * 10 8 7 41 41 H 1.09004 * 109.47445 * 55.00036 * 10 8 7 42 42 H 0.97009 * 120.00112 * 0.02562 * 13 11 10 43 43 H 1.08995 * 113.61644 * 25.42418 * 16 14 13 44 44 H 1.09006 * 113.66662 * 254.47389 * 16 14 13 45 45 H 0.97001 * 120.00384 * 74.14144 * 19 17 16 46 46 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 47 47 H 1.09000 * 113.61546 * 105.38674 * 28 14 13 48 48 H 1.08999 * 113.61714 * 334.48342 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7218 -1.2489 6 6 4.0796 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2496 8 6 2.0395 -0.7215 1.2493 9 1 1.6759 -1.7490 1.2492 10 6 1.5295 -0.0008 2.4988 11 6 1.9276 -0.7798 3.7258 12 8 2.5577 -1.8098 3.6121 13 7 1.5844 -0.3314 4.9496 14 6 1.9709 -1.0890 6.1424 15 1 2.1462 -2.1446 5.9349 16 6 3.0961 -0.4278 6.9591 17 6 2.3249 -0.8569 8.2184 18 1 2.5962 -1.8489 8.5797 19 7 2.3236 0.1540 9.2786 20 6 3.0964 -0.0238 10.3951 21 1 3.7102 -0.9071 10.4919 22 6 3.0908 0.9313 11.4024 23 7 2.3423 2.0076 11.2846 24 14 4.1454 0.6892 12.9250 25 1 4.8883 -0.5918 12.8140 26 1 5.1104 1.8119 13.0425 27 1 3.2765 0.6554 14.1288 28 6 1.0542 -0.8430 7.3523 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6768 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.9335 -1.2352 -2.1390 35 1 3.9338 0.3058 -1.2486 36 1 3.7159 -2.4708 0.0003 37 1 5.1696 -1.4433 0.0009 38 1 3.9333 0.3056 1.2498 39 1 3.9328 -1.2358 2.1397 40 1 0.4432 0.0779 2.4550 41 1 1.9644 0.9977 2.5453 42 1 1.0808 0.4927 5.0405 43 1 3.1530 0.6529 6.8289 44 1 4.0628 -0.9196 6.8502 45 1 1.7722 0.9473 9.1918 46 1 2.3386 2.6752 11.9883 47 1 0.3748 -1.6695 7.5605 48 1 0.5517 0.1240 7.3299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023151925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:22 Heat of formation + Delta-G solvation = -61.984122 kcal Electronic energy + Delta-G solvation = -23771.516622 eV Core-core repulsion = 20438.768533 eV Total energy + Delta-G solvation = -3332.748089 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28333 -40.01263 -38.84765 -35.75917 -34.32495 -33.85476 -32.85342 -31.78469 -28.75257 -26.91321 -26.54123 -26.17430 -24.03714 -22.79953 -21.89993 -21.30078 -20.66738 -20.48264 -19.15452 -17.90409 -17.50047 -16.44856 -16.28797 -16.13213 -15.83838 -15.45268 -15.34360 -14.98838 -14.92768 -14.74023 -14.38921 -13.88370 -13.55093 -13.32941 -13.27496 -13.16390 -12.96762 -12.86167 -12.65142 -12.46298 -12.30479 -12.20450 -12.16074 -12.05184 -11.83517 -11.72887 -11.68426 -11.48744 -11.26988 -11.09005 -10.89066 -10.78835 -10.44021 -9.90258 -8.99122 -7.96384 -5.24304 1.47355 1.47702 1.57784 1.72929 2.31103 2.56766 3.35523 3.68782 3.72904 3.75432 3.82947 3.86961 3.97600 4.04692 4.19348 4.25726 4.31281 4.31475 4.44698 4.51848 4.59298 4.63794 4.72028 4.75872 4.79902 4.87378 4.88310 4.90377 4.92322 5.02827 5.10497 5.14353 5.16038 5.24026 5.25660 5.32781 5.34933 5.40745 5.42526 5.50810 5.53852 5.59315 5.68620 5.73089 6.26501 6.68134 7.32933 7.37162 8.08432 8.32114 9.26940 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.033991 B = 0.002434 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.539286 B =11502.225214 C =11800.770209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 H 0.077 0.923 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.059 4.059 9 H 0.057 0.943 10 C -0.135 4.135 11 C 0.507 3.493 12 O -0.580 6.580 13 N -0.710 5.710 14 C 0.137 3.863 15 H 0.102 0.898 16 C -0.169 4.169 17 C 0.149 3.851 18 H 0.076 0.924 19 N -0.724 5.724 20 C -0.244 4.244 21 H 0.075 0.925 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.971 3.029 25 H -0.268 1.268 26 H -0.294 1.294 27 H -0.292 1.292 28 C -0.139 4.139 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.413 0.587 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.376 0.624 46 H 0.251 0.749 47 H 0.081 0.919 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.373 -3.128 -26.883 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.078 4.078 9 H 0.075 0.925 10 C -0.174 4.174 11 C 0.295 3.705 12 O -0.461 6.461 13 N -0.361 5.361 14 C 0.031 3.969 15 H 0.120 0.880 16 C -0.211 4.211 17 C 0.038 3.962 18 H 0.094 0.906 19 N -0.361 5.361 20 C -0.375 4.375 21 H 0.093 0.907 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.800 3.200 25 H -0.192 1.192 26 H -0.221 1.221 27 H -0.219 1.219 28 C -0.178 4.178 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.249 0.751 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.208 0.792 46 H 0.060 0.940 47 H 0.099 0.901 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.813 -3.949 -26.820 27.376 hybrid contribution 0.379 0.593 1.309 1.486 sum -3.434 -3.355 -25.511 25.959 Atomic orbital electron populations 1.21924 0.94488 1.01870 1.02533 1.21143 0.95990 0.99556 0.93434 0.90442 1.21579 0.95192 1.00532 0.97684 1.21534 0.96012 1.00739 0.97155 1.21490 0.99957 0.99099 0.94949 1.21666 0.95636 1.00326 0.98157 1.20856 0.95078 0.98932 0.92942 0.92474 1.21904 1.04525 1.00293 0.90718 1.21389 0.78103 0.85400 0.85579 1.90645 1.41510 1.26724 1.87182 1.45998 1.57257 1.27642 1.05164 1.22085 0.95538 0.96445 0.82869 0.87988 1.24174 0.98137 1.00435 0.98394 1.21673 0.95373 0.92665 0.86455 0.90647 1.42504 1.52300 1.22724 1.18619 1.19720 1.17971 1.03821 0.96035 0.90736 1.25540 1.02118 0.97148 1.01941 1.69806 1.45022 1.11779 1.35266 0.85108 0.77940 0.77412 0.79522 1.19220 1.22131 1.21935 1.23637 0.97253 1.02879 0.94039 0.91611 0.91802 0.93186 0.92632 0.90802 0.91571 0.91668 0.93112 0.92441 0.92197 0.93031 0.86360 0.87249 0.75093 0.91107 0.93164 0.79173 0.93983 0.90082 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.85 71.98 0.64 -0.96 16 2 C -0.08 -1.06 2.25 -10.79 -0.02 -1.08 16 3 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.42 5.20 30.59 0.16 -1.26 16 5 C -0.12 -1.61 5.92 30.60 0.18 -1.43 16 6 C -0.12 -2.13 5.92 30.59 0.18 -1.95 16 7 C -0.12 -2.48 4.94 30.59 0.15 -2.33 16 8 C -0.06 -1.04 1.36 -10.80 -0.01 -1.06 16 9 H 0.06 1.25 7.95 -2.39 -0.02 1.23 16 10 C -0.14 -2.17 4.96 29.85 0.15 -2.03 16 11 C 0.51 12.44 7.55 87.66 0.66 13.11 16 12 O -0.58 -19.02 13.57 -3.03 -0.04 -19.06 16 13 N -0.71 -16.61 5.36 -439.77 -2.36 -18.97 16 14 C 0.14 3.94 4.24 45.58 0.19 4.13 16 15 H 0.10 3.15 7.47 -2.39 -0.02 3.13 16 16 C -0.17 -5.91 7.70 31.18 0.24 -5.67 16 17 C 0.15 5.75 4.47 45.52 0.20 5.95 16 18 H 0.08 2.94 8.11 -2.39 -0.02 2.92 16 19 N -0.72 -35.86 5.41 -320.44 -1.73 -37.59 16 20 C -0.24 -13.48 9.97 84.03 0.84 -12.64 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 23 N -0.97 -58.57 13.06 21.65 0.28 -58.29 16 24 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 C -0.14 -4.14 7.58 31.12 0.24 -3.90 16 29 H 0.06 0.60 6.32 -2.39 -0.02 0.58 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.05 1.41 5.95 -2.39 -0.01 1.40 16 40 H 0.12 1.37 6.17 -2.38 -0.01 1.35 16 41 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.41 7.47 8.73 -92.70 -0.81 6.66 16 43 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.38 19.69 7.91 -92.71 -0.73 18.96 16 46 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 47 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 48 H 0.09 2.57 8.09 -2.39 -0.02 2.55 16 Total: -1.00 -67.35 371.51 1.83 -65.53 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.61 Total: 35.20 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 4.26 Total: -14.94 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -3.81 Total: -114.84 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.04 Total: -19.06 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -67.35 1.83 -65.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023151925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.541 kcal (2) G-P(sol) polarization free energy of solvation -67.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds