Wall clock time and date at job start Fri Apr 10 2020 20:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46994 * 2 1 4 4 C 1.50703 * 109.47311 * 119.99925 * 2 1 3 5 5 O 1.21279 * 120.00024 * 120.00260 * 4 2 1 6 6 N 1.34778 * 119.99935 * 299.99908 * 4 2 1 7 7 C 1.46499 * 119.99771 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46840 * 204.99940 * 7 6 4 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 N 1.46506 * 109.47075 * 59.99940 * 10 9 8 12 12 C 1.36936 * 119.99591 * 85.00119 * 11 10 9 13 13 H 1.07999 * 120.00471 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99954 * 180.02562 * 12 11 10 15 15 N 1.31627 * 119.99738 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00096 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47396 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47157 * 119.99743 * 16 14 12 19 19 H 1.48502 * 109.47083 * 239.99568 * 16 14 12 20 20 C 1.53005 * 109.47159 * 300.00546 * 10 9 8 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 10 9 22 22 C 1.52997 * 109.46971 * 240.00104 * 2 1 3 23 23 C 1.53787 * 113.61363 * 157.49755 * 22 2 1 24 24 C 1.53783 * 87.08000 * 220.01585 * 23 22 2 25 25 C 1.53778 * 113.61605 * 60.00160 * 22 2 1 26 26 H 1.09005 * 109.46706 * 300.00007 * 1 2 3 27 27 H 1.09004 * 109.47249 * 59.99633 * 1 2 3 28 28 H 1.08999 * 109.46994 * 180.02562 * 1 2 3 29 29 H 0.97006 * 119.99662 * 0.02562 * 6 4 2 30 30 H 1.08992 * 109.47397 * 325.00275 * 7 6 4 31 31 H 1.09002 * 109.47398 * 300.00326 * 8 7 6 32 32 H 1.09001 * 109.47194 * 60.00507 * 8 7 6 33 33 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 35 35 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 36 36 H 0.97000 * 119.99856 * 265.00497 * 11 10 9 37 37 H 0.97000 * 119.99679 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.46935 * 299.99411 * 20 10 9 39 39 H 1.09001 * 109.46812 * 179.97438 * 20 10 9 40 40 H 1.08993 * 109.47194 * 179.97438 * 21 20 10 41 41 H 1.09002 * 109.46695 * 59.99734 * 21 20 10 42 42 H 1.09000 * 112.85235 * 288.80150 * 22 2 1 43 43 H 1.09000 * 113.61632 * 334.56508 * 23 22 2 44 44 H 1.08996 * 113.61740 * 105.46923 * 23 22 2 45 45 H 1.08992 * 113.61739 * 270.88584 * 24 23 22 46 46 H 1.09000 * 113.68944 * 139.99203 * 24 23 22 47 47 H 1.09000 * 113.61493 * 254.52844 * 25 22 2 48 48 H 1.09001 * 113.62017 * 25.42758 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1948 -0.9408 3.6507 8 6 1.2507 -0.6613 4.8218 9 6 1.7606 -1.3824 6.0712 10 6 3.1632 -0.8771 6.4150 11 7 3.1140 0.5649 6.6693 12 6 2.7840 1.0297 7.9144 13 1 2.5603 0.3334 8.7090 14 6 2.7369 2.3960 8.1552 15 7 3.0099 3.2447 7.1869 16 14 2.2874 3.0300 9.8538 17 1 2.0280 1.8813 10.7583 18 1 3.4087 3.8412 10.3921 19 1 1.0675 3.8718 9.7611 20 6 4.1073 -1.1564 5.2438 21 6 3.5974 -0.4354 3.9945 22 6 2.0400 -0.7212 -1.2492 23 6 3.4727 -0.3276 -1.6461 24 6 2.9922 -0.3573 -3.1066 25 6 1.5811 -0.0722 -2.5657 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.1488 0.5386 2.5435 30 1 2.2311 -2.0135 3.4613 31 1 1.2144 0.4115 5.0113 32 1 0.2513 -1.0211 4.5768 33 1 1.0878 -1.1837 6.9055 34 1 1.7972 -2.4552 5.8820 35 1 3.5266 -1.3911 7.3049 36 1 3.3152 1.1904 5.9556 37 1 2.9773 4.1994 7.3553 38 1 4.1439 -2.2293 5.0547 39 1 5.1064 -0.7960 5.4887 40 1 4.2702 -0.6340 3.1603 41 1 3.5607 0.6375 4.1837 42 1 1.8758 -1.7982 -1.2129 43 1 3.7639 0.6649 -1.3023 44 1 4.2152 -1.0914 -1.4152 45 1 3.0896 -1.3349 -3.5786 46 1 3.3969 0.4498 -3.7173 47 1 0.7966 -0.6299 -3.0772 48 1 1.3552 0.9901 -2.4734 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026512891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:30 Heat of formation + Delta-G solvation = -35.214120 kcal Electronic energy + Delta-G solvation = -24587.408292 eV Core-core repulsion = 21255.821038 eV Total energy + Delta-G solvation = -3331.587254 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33049 -38.85318 -37.66539 -34.56898 -33.34026 -32.45478 -30.24883 -30.14694 -27.59304 -26.32812 -25.38155 -23.81206 -23.22350 -22.15377 -21.28348 -19.98773 -19.50366 -18.49625 -17.22655 -16.95811 -16.20234 -15.47839 -15.17980 -14.91297 -14.53267 -14.31615 -13.89591 -13.78381 -13.53196 -13.08264 -12.74737 -12.70536 -12.65571 -12.30246 -12.26058 -12.03210 -11.73550 -11.67297 -11.62999 -11.33478 -10.90745 -10.76882 -10.66746 -10.60873 -10.45091 -10.31757 -10.27419 -10.14905 -10.04925 -9.75717 -9.50495 -9.34703 -8.89637 -8.69731 -6.92869 -5.76498 -3.03690 2.81677 3.35123 3.42360 3.48764 3.50387 4.39541 4.48284 4.51998 4.60179 4.71896 4.85747 5.02072 5.15696 5.20477 5.26813 5.34218 5.50607 5.53325 5.54292 5.58081 5.60994 5.64423 5.73257 5.74110 5.80225 5.81433 5.85516 5.92287 6.01010 6.02254 6.09174 6.14123 6.16628 6.27182 6.39313 6.44144 6.50850 6.67198 6.73471 6.77768 6.94783 7.01563 7.09810 7.71919 7.73179 8.42115 8.43191 9.54396 10.13755 10.48842 11.46404 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.024215 B = 0.003203 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.013400 B = 8738.703028 C = 9060.622898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.096 0.904 4 C 0.517 3.483 5 O -0.543 6.543 6 N -0.723 5.723 7 C 0.150 3.850 8 C -0.117 4.117 9 C -0.129 4.129 10 C 0.172 3.828 11 N -0.721 5.721 12 C -0.233 4.233 13 H 0.070 0.930 14 C -0.016 4.016 15 N -0.934 5.934 16 Si 0.904 3.096 17 H -0.281 1.281 18 H -0.293 1.293 19 H -0.293 1.293 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.087 4.087 23 C -0.134 4.134 24 C -0.144 4.144 25 C -0.136 4.136 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.399 0.601 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.384 0.616 37 H 0.253 0.747 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 -7.053 -17.702 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.114 0.886 4 C 0.303 3.697 5 O -0.420 6.420 6 N -0.373 5.373 7 C 0.046 3.954 8 C -0.155 4.155 9 C -0.170 4.170 10 C 0.062 3.938 11 N -0.363 5.363 12 C -0.364 4.364 13 H 0.088 0.912 14 C -0.211 4.211 15 N -0.583 5.583 16 Si 0.736 3.264 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.220 1.220 20 C -0.158 4.158 21 C -0.162 4.162 22 C -0.106 4.106 23 C -0.171 4.171 24 C -0.181 4.181 25 C -0.174 4.174 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.233 0.767 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.219 0.781 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.881 -7.747 -17.586 19.605 hybrid contribution -0.487 1.141 0.842 1.499 sum -4.368 -6.606 -16.744 18.523 Atomic orbital electron populations 1.21743 0.93014 1.02646 1.02587 1.21379 0.97389 1.00604 0.93164 0.88640 1.20578 0.80003 0.84550 0.84613 1.90664 1.37955 1.26571 1.86858 1.46220 1.53308 1.32002 1.05776 1.21025 0.94097 0.96783 0.83529 1.21659 0.96727 1.03182 0.93917 1.22080 1.00613 0.97472 0.96796 1.20249 0.91766 0.87099 0.94729 1.42504 1.82826 0.99852 1.11130 1.19312 1.38028 0.90563 0.88544 0.91231 1.24708 1.02955 0.95989 0.97488 1.69668 1.56158 1.01399 1.31104 0.86157 0.77577 0.78617 0.84099 1.20648 1.22003 1.22023 1.21739 0.99707 0.99237 0.95094 1.21808 0.95486 1.01401 0.97492 1.22338 0.96270 1.00268 0.91678 1.22910 0.96865 1.01791 0.95534 1.22804 0.96841 1.01708 0.96754 1.22968 0.96975 1.00926 0.96507 0.92048 0.91467 0.92186 0.76725 0.90315 0.90023 0.93111 0.91754 0.93644 0.93426 0.78133 0.93699 0.92477 0.91813 0.92629 0.90999 0.88560 0.90390 0.91207 0.90371 0.91639 0.91604 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.89 37.16 0.33 -0.86 16 2 C -0.10 -1.06 2.48 -91.77 -0.23 -1.29 16 3 H 0.10 0.90 7.94 -51.93 -0.41 0.48 16 4 C 0.52 7.12 7.11 -10.98 -0.08 7.04 16 5 O -0.54 -9.37 15.51 5.56 0.09 -9.28 16 6 N -0.72 -9.75 4.97 -53.81 -0.27 -10.02 16 7 C 0.15 2.32 2.45 -67.93 -0.17 2.15 16 8 C -0.12 -1.89 5.23 -26.73 -0.14 -2.03 16 9 C -0.13 -2.23 5.61 -26.73 -0.15 -2.38 16 10 C 0.17 3.34 3.10 -67.93 -0.21 3.13 16 11 N -0.72 -17.30 4.28 -53.42 -0.23 -17.53 16 12 C -0.23 -6.28 9.93 -15.06 -0.15 -6.43 16 13 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 14 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 15 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 16 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 20 C -0.12 -2.05 5.61 -26.73 -0.15 -2.20 16 21 C -0.12 -2.08 5.32 -26.73 -0.14 -2.23 16 22 C -0.09 -0.88 2.54 -89.81 -0.23 -1.10 16 23 C -0.13 -1.36 7.60 -25.91 -0.20 -1.56 16 24 C -0.14 -1.19 8.08 -25.92 -0.21 -1.40 16 25 C -0.14 -1.08 6.68 -25.92 -0.17 -1.25 16 26 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 27 H 0.07 0.46 7.45 -51.93 -0.39 0.08 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.40 4.68 8.02 -40.82 -0.33 4.36 16 30 H 0.08 1.30 7.58 -51.93 -0.39 0.90 16 31 H 0.08 1.53 7.60 -51.93 -0.39 1.14 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.38 9.76 6.06 -40.82 -0.25 9.52 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.36 6.51 -51.93 -0.34 1.02 16 42 H 0.10 1.11 7.86 -51.93 -0.41 0.71 16 43 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -30.42 371.24 -9.85 -40.27 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -8.75 Total: 11.62 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -1.99 Total: -10.95 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.23 Total: -54.36 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.42 -9.85 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026512891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.061 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds