Wall clock time and date at job start Fri Apr 10 2020 20:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 O 1.21282 * 119.99865 * 240.00203 * 4 2 1 6 6 N 1.34774 * 120.00164 * 59.99708 * 4 2 1 7 7 C 1.46496 * 120.00339 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47069 * 275.00459 * 7 6 4 9 9 C 1.53006 * 109.47213 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47051 * 59.99331 * 9 8 7 11 11 N 1.46506 * 109.47213 * 180.02562 * 10 9 8 12 12 C 1.36933 * 120.00139 * 275.00615 * 11 10 9 13 13 H 1.08002 * 119.99705 * 359.97438 * 12 11 10 14 14 C 1.38805 * 120.00341 * 179.97438 * 12 11 10 15 15 N 1.31623 * 119.99779 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00316 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47133 * 59.99845 * 16 14 12 18 18 H 1.48508 * 109.47005 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47178 * 299.99730 * 16 14 12 20 20 C 1.53005 * 109.47518 * 300.00193 * 10 9 8 21 21 C 1.52996 * 109.46817 * 60.00077 * 20 10 9 22 22 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 23 23 C 1.53781 * 113.61815 * 279.14051 * 22 2 1 24 24 C 1.53957 * 87.02056 * 220.04531 * 23 22 2 25 25 C 1.53778 * 87.11256 * 25.35888 * 24 23 22 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.97005 * 119.99795 * 359.97438 * 6 4 2 30 30 H 1.09006 * 109.47123 * 34.99772 * 7 6 4 31 31 H 1.09003 * 109.46829 * 299.99184 * 8 7 6 32 32 H 1.08993 * 109.47834 * 59.99653 * 8 7 6 33 33 H 1.08999 * 109.46714 * 299.99912 * 9 8 7 34 34 H 1.08999 * 109.46872 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.47335 * 60.00497 * 10 9 8 36 36 H 0.96995 * 119.99460 * 94.99816 * 11 10 9 37 37 H 0.97000 * 119.99837 * 179.97438 * 15 14 12 38 38 H 1.08994 * 109.46795 * 300.00432 * 20 10 9 39 39 H 1.08997 * 109.47005 * 180.02562 * 20 10 9 40 40 H 1.09002 * 109.47071 * 180.02562 * 21 20 10 41 41 H 1.09006 * 109.47475 * 60.00335 * 21 20 10 42 42 H 1.09004 * 112.84889 * 50.33315 * 22 2 1 43 43 H 1.09005 * 113.61129 * 334.55985 * 23 22 2 44 44 H 1.08992 * 113.62003 * 105.46506 * 23 22 2 45 45 H 1.08995 * 113.53599 * 270.80604 * 24 23 22 46 46 H 1.08996 * 113.74171 * 139.93783 * 24 23 22 47 47 H 1.08994 * 113.61821 * 220.09268 * 25 24 23 48 48 H 1.09008 * 113.61507 * 89.18350 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1946 -0.9406 -3.6508 8 6 3.5973 -0.4358 -3.9948 9 6 4.1072 -1.1577 -5.2438 10 6 3.1632 -0.8788 -6.4151 11 7 3.6510 -1.5705 -7.6109 12 6 4.5982 -0.9807 -8.4046 13 1 4.9853 -0.0053 -8.1492 14 6 5.0608 -1.6362 -9.5372 15 7 4.5893 -2.8251 -9.8481 16 14 6.3524 -0.8313 -10.6203 17 1 7.5805 -0.5814 -9.8238 18 1 6.6749 -1.7302 -11.7576 19 1 5.8290 0.4574 -11.1404 20 6 1.7604 -1.3837 -6.0711 21 6 1.2506 -0.6618 -4.8222 22 6 2.0400 -0.7212 1.2491 23 6 2.0344 0.1557 2.5124 24 6 3.3856 -0.4901 2.8693 25 6 3.5734 -0.7444 1.3643 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.1487 0.5386 -2.5436 30 1 2.2310 -2.0135 -3.4614 31 1 3.5610 0.6371 -4.1843 32 1 4.2700 -0.6348 -3.1606 33 1 4.1435 -2.2304 -5.0540 34 1 5.1063 -0.7977 -5.4891 35 1 3.1268 0.1939 -6.6050 36 1 3.3030 -2.4464 -7.8403 37 1 4.9123 -3.2831 -10.6399 38 1 1.7969 -2.4564 -5.8812 39 1 1.0880 -1.1854 -6.9057 40 1 0.2515 -1.0218 -4.5768 41 1 1.2142 0.4110 -5.0120 42 1 1.5766 -1.6973 1.3932 43 1 2.1026 1.2233 2.3030 44 1 1.2343 -0.0895 3.2106 45 1 3.2900 -1.4026 3.4577 46 1 4.1095 0.2093 3.2875 47 1 4.0137 -1.7152 1.1371 48 1 4.0629 0.0767 0.8405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026512892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:33 Heat of formation + Delta-G solvation = -37.062664 kcal Electronic energy + Delta-G solvation = -24137.265275 eV Core-core repulsion = 20805.597862 eV Total energy + Delta-G solvation = -3331.667413 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47970 -38.85639 -37.60764 -34.79647 -33.57921 -32.57724 -30.48824 -30.36384 -27.34074 -26.26013 -25.57492 -23.96670 -22.98626 -22.26288 -20.94090 -20.17755 -19.67128 -19.29585 -17.30706 -16.86441 -16.32824 -15.62859 -15.24535 -15.16163 -14.69712 -14.15060 -14.00324 -13.67597 -13.57985 -13.17625 -12.97118 -12.72944 -12.60479 -12.58962 -12.44369 -11.99710 -11.88475 -11.77810 -11.50957 -11.39120 -10.99590 -10.79290 -10.76189 -10.73587 -10.64451 -10.54562 -10.31032 -10.18911 -10.07191 -9.72933 -9.66608 -9.46433 -8.90700 -8.81153 -6.91662 -5.73152 -3.01561 2.67928 3.15891 3.45782 3.50157 3.51159 4.29231 4.39880 4.41319 4.61596 4.68043 4.75163 4.91387 4.92535 5.05166 5.07571 5.15141 5.31531 5.43245 5.44919 5.51922 5.54549 5.55427 5.64543 5.66977 5.68642 5.71367 5.76678 5.80474 5.89531 5.91087 6.02636 6.06206 6.09257 6.27038 6.30756 6.31918 6.35098 6.52022 6.60446 6.70707 6.75863 7.02052 7.18132 7.54061 7.72532 8.27939 8.45860 9.56546 10.15478 10.50060 11.49623 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.031659 B = 0.002713 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.200737 B =10316.966838 C =10808.107307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.094 0.906 4 C 0.515 3.485 5 O -0.533 6.533 6 N -0.727 5.727 7 C 0.145 3.855 8 C -0.122 4.122 9 C -0.132 4.132 10 C 0.178 3.822 11 N -0.726 5.726 12 C -0.237 4.237 13 H 0.069 0.931 14 C -0.015 4.015 15 N -0.934 5.934 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.088 4.088 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.124 4.124 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.396 0.604 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 8.031 23.751 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.112 0.888 4 C 0.300 3.700 5 O -0.409 6.409 6 N -0.378 5.378 7 C 0.041 3.959 8 C -0.162 4.162 9 C -0.173 4.173 10 C 0.068 3.932 11 N -0.366 5.366 12 C -0.368 4.368 13 H 0.087 0.913 14 C -0.211 4.211 15 N -0.583 5.583 16 Si 0.737 3.263 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.107 4.107 23 C -0.174 4.174 24 C -0.184 4.184 25 C -0.162 4.162 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.229 0.771 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.472 7.402 23.708 26.581 hybrid contribution 0.427 0.534 -0.809 1.059 sum -9.045 7.936 22.899 25.868 Atomic orbital electron populations 1.21744 0.93037 1.02740 1.02456 1.21384 0.97355 1.00463 0.93238 0.88753 1.20606 0.80135 0.84704 0.84510 1.90705 1.37351 1.26164 1.86696 1.46208 1.53668 1.32033 1.05890 1.21077 0.93885 0.97728 0.83169 1.21883 0.95479 1.00051 0.98770 1.22220 1.00848 0.99959 0.94271 1.20233 0.90112 0.95889 0.86986 1.42425 1.48067 1.21064 1.25027 1.19195 1.14065 1.00522 1.03024 0.91312 1.24736 1.00583 0.96878 0.98879 1.69654 1.46518 1.14106 1.27978 0.86285 0.81643 0.78199 0.80174 1.21321 1.21727 1.21328 1.21750 0.98228 1.00050 0.95906 1.21743 0.98011 1.01203 0.94724 1.22330 0.97079 0.98972 0.92269 1.23009 0.97816 0.99257 0.97269 1.22882 0.97414 1.00785 0.97325 1.22801 0.95703 1.02626 0.95050 0.91504 0.92081 0.92185 0.77087 0.89604 0.92454 0.92457 0.92536 0.91887 0.93668 0.78317 0.93511 0.92011 0.91420 0.91981 0.91665 0.88960 0.90212 0.91600 0.90371 0.91665 0.90822 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.07 37.16 0.34 -0.57 16 2 C -0.10 -0.86 2.46 -91.77 -0.23 -1.08 16 3 H 0.09 0.66 7.98 -51.93 -0.41 0.25 16 4 C 0.51 6.10 6.93 -10.98 -0.08 6.03 16 5 O -0.53 -8.52 14.62 5.56 0.08 -8.43 16 6 N -0.73 -7.77 4.97 -53.81 -0.27 -8.04 16 7 C 0.15 1.94 2.45 -67.93 -0.17 1.77 16 8 C -0.12 -1.85 5.49 -26.73 -0.15 -2.00 16 9 C -0.13 -2.45 5.50 -26.73 -0.15 -2.59 16 10 C 0.18 3.50 2.77 -67.93 -0.19 3.31 16 11 N -0.73 -18.31 5.12 -53.42 -0.27 -18.58 16 12 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 13 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 14 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 15 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 16 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 C -0.12 -1.95 5.39 -26.73 -0.14 -2.09 16 21 C -0.12 -1.47 5.39 -26.73 -0.14 -1.62 16 22 C -0.09 -0.78 2.68 -89.81 -0.24 -1.02 16 23 C -0.14 -0.94 7.63 -25.83 -0.20 -1.14 16 24 C -0.15 -1.14 8.09 -25.83 -0.21 -1.35 16 25 C -0.12 -1.24 6.29 -25.92 -0.16 -1.40 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 29 H 0.40 3.09 8.02 -40.82 -0.33 2.77 16 30 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.38 10.30 7.80 -40.82 -0.32 9.98 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.08 0.49 7.99 -51.93 -0.41 0.08 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 48 H 0.07 0.77 8.10 -51.92 -0.42 0.34 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -31.97 375.44 -10.04 -42.00 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -8.98 Total: 8.63 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -1.96 Total: -11.04 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.18 Total: -54.41 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.97 -10.04 -42.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026512892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.941 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds