Wall clock time and date at job start Fri Apr 10 2020 20:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47167 * 2 1 4 4 C 1.50705 * 109.46866 * 240.00182 * 2 1 3 5 5 O 1.21275 * 120.00242 * 263.08823 * 4 2 1 6 6 N 1.34780 * 119.99805 * 83.08840 * 4 2 1 7 7 C 1.46929 * 120.63023 * 4.97436 * 6 4 2 8 8 C 1.53193 * 108.77087 * 233.58463 * 7 6 4 9 9 C 1.53044 * 109.31238 * 305.36140 * 8 7 6 10 10 C 1.53040 * 109.53495 * 61.36993 * 9 8 7 11 11 H 1.08994 * 109.49680 * 58.61465 * 10 9 8 12 12 N 1.46504 * 109.49511 * 178.68334 * 10 9 8 13 13 C 1.46491 * 119.99943 * 59.99869 * 12 10 9 14 14 C 1.36937 * 119.99873 * 239.99838 * 12 10 9 15 15 H 1.08008 * 119.99765 * 25.35422 * 14 12 10 16 16 C 1.38803 * 119.99890 * 205.35366 * 14 12 10 17 17 N 1.31621 * 120.00458 * 12.87292 * 16 14 12 18 18 Si 1.86811 * 119.99983 * 192.87020 * 16 14 12 19 19 H 1.48502 * 109.46833 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46679 * 120.00068 * 18 16 14 21 21 H 1.48498 * 109.47056 * 240.00476 * 18 16 14 22 22 C 1.46924 * 120.62957 * 184.68863 * 6 4 2 23 23 C 1.52995 * 109.47292 * 120.00211 * 2 1 3 24 24 C 1.53780 * 113.61631 * 279.13383 * 23 2 1 25 25 C 1.53949 * 87.02119 * 220.04760 * 24 23 2 26 26 C 1.53780 * 87.11253 * 25.36533 * 25 24 23 27 27 H 1.08995 * 109.47483 * 55.55907 * 1 2 3 28 28 H 1.09005 * 109.47153 * 295.55634 * 1 2 3 29 29 H 1.09003 * 109.47166 * 175.56230 * 1 2 3 30 30 H 1.08999 * 109.58545 * 353.36838 * 7 6 4 31 31 H 1.08998 * 109.58450 * 113.79573 * 7 6 4 32 32 H 1.09000 * 109.49873 * 65.31845 * 8 7 6 33 33 H 1.09009 * 109.49207 * 185.38101 * 8 7 6 34 34 H 1.09000 * 109.45945 * 181.39132 * 9 8 7 35 35 H 1.08999 * 109.45665 * 301.34971 * 9 8 7 36 36 H 1.09002 * 109.47345 * 89.68692 * 13 12 10 37 37 H 1.09004 * 109.47163 * 209.68645 * 13 12 10 38 38 H 1.09003 * 109.47919 * 329.68512 * 13 12 10 39 39 H 0.96999 * 120.00508 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.58960 * 246.20352 * 22 6 4 41 41 H 1.09001 * 109.58636 * 6.62822 * 22 6 4 42 42 H 1.09001 * 112.84800 * 50.33386 * 23 2 1 43 43 H 1.08995 * 113.61576 * 334.56964 * 24 23 2 44 44 H 1.09000 * 113.60925 * 105.46882 * 24 23 2 45 45 H 1.09005 * 113.54044 * 270.81047 * 25 24 23 46 46 H 1.09004 * 113.66836 * 139.92965 * 25 24 23 47 47 H 1.09003 * 113.61677 * 220.09075 * 26 25 24 48 48 H 1.08999 * 113.69457 * 89.19698 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.3535 -1.8782 -1.1679 6 7 2.1244 -0.0479 -2.4007 7 6 1.8432 1.3926 -2.4695 8 6 0.7915 1.6381 -3.5560 9 6 1.2737 1.0281 -4.8742 10 6 1.4495 -0.4827 -4.7049 11 1 0.5018 -0.9275 -4.4015 12 7 1.8808 -1.0702 -5.9758 13 6 3.1350 -0.6355 -6.5954 14 6 1.1114 -2.0256 -6.5845 15 1 0.0491 -2.0655 -6.3939 16 6 1.6970 -2.9427 -7.4463 17 7 3.0070 -3.0635 -7.4879 18 14 0.6257 -4.0057 -8.5473 19 1 -0.8037 -3.6787 -8.3120 20 1 0.9652 -3.7448 -9.9692 21 1 0.8640 -5.4380 -8.2361 22 6 2.5140 -0.7512 -3.6304 23 6 2.0400 -0.7213 1.2492 24 6 2.0345 0.1558 2.5123 25 6 3.3856 -0.4901 2.8692 26 6 3.5734 -0.7443 1.3643 27 1 -0.3634 0.5812 -0.8475 28 1 -0.3634 0.4434 0.9272 29 1 -0.3634 -1.0246 -0.0795 30 1 1.4625 1.7369 -1.5080 31 1 2.7574 1.9319 -2.7173 32 1 -0.1499 1.1734 -3.2628 33 1 0.6437 2.7106 -3.6834 34 1 0.5384 1.2230 -5.6549 35 1 2.2273 1.4756 -5.1540 36 1 3.9537 -1.2577 -6.2338 37 1 3.0573 -0.7308 -7.6785 38 1 3.3274 0.4053 -6.3351 39 1 3.4161 -3.7046 -8.0899 40 1 3.4818 -0.3831 -3.9709 41 1 2.5761 -1.8218 -3.4350 42 1 1.5766 -1.6973 1.3932 43 1 2.1026 1.2233 2.3030 44 1 1.2342 -0.0895 3.2106 45 1 3.2900 -1.4027 3.4577 46 1 4.1087 0.2104 3.2872 47 1 4.0137 -1.7152 1.1370 48 1 4.0630 0.0758 0.8392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027460948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:35 Heat of formation + Delta-G solvation = -2.575640 kcal Electronic energy + Delta-G solvation = -25225.714706 eV Core-core repulsion = 21895.542762 eV Total energy + Delta-G solvation = -3330.171944 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38741 -38.64798 -37.12036 -35.05879 -33.12124 -32.03512 -31.20055 -28.72991 -26.21065 -25.97918 -25.45971 -25.17812 -23.71890 -22.30485 -21.61043 -19.72322 -19.20843 -18.33813 -17.06912 -16.68658 -15.92713 -15.33113 -15.13361 -14.75395 -14.58276 -14.10962 -13.98969 -13.61889 -13.37461 -13.09794 -12.69515 -12.62867 -12.53010 -12.36270 -12.18397 -12.14210 -11.89969 -11.69560 -11.38654 -11.06829 -11.00850 -10.81219 -10.67752 -10.50367 -10.39660 -10.38317 -10.31267 -10.17646 -10.11619 -9.86308 -9.70800 -9.24132 -8.54880 -8.22657 -6.69893 -5.72574 -3.19367 2.95503 3.30032 3.39885 3.46659 3.48844 4.39267 4.50356 4.52323 4.56792 4.75302 4.91061 4.94922 5.07900 5.16242 5.24711 5.30135 5.32501 5.45837 5.55487 5.58502 5.61658 5.62356 5.66477 5.71529 5.77584 5.79974 5.84896 5.95929 6.01773 6.04825 6.08514 6.19158 6.20675 6.27010 6.42079 6.44696 6.54734 6.74267 6.82204 6.96819 7.04477 7.36668 7.70204 7.79459 7.82957 8.42560 8.55149 9.24828 9.87261 10.37494 11.33238 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.003815 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.324357 B = 7336.828791 C = 7738.091108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.089 0.911 4 C 0.516 3.484 5 O -0.539 6.539 6 N -0.608 5.608 7 C 0.106 3.894 8 C -0.131 4.131 9 C -0.133 4.133 10 C 0.169 3.831 11 H 0.063 0.937 12 N -0.591 5.591 13 C 0.161 3.839 14 C -0.257 4.257 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.904 5.904 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.099 3.901 23 C -0.088 4.088 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.133 4.133 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.023 0.977 37 H 0.047 0.953 38 H -0.001 1.001 39 H 0.252 0.748 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.383 12.258 17.079 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.107 0.893 4 C 0.303 3.697 5 O -0.415 6.415 6 N -0.342 5.342 7 C -0.017 4.017 8 C -0.169 4.169 9 C -0.173 4.173 10 C 0.060 3.940 11 H 0.082 0.918 12 N -0.312 5.312 13 C 0.017 3.983 14 C -0.387 4.387 15 H 0.085 0.915 16 C -0.194 4.194 17 N -0.548 5.548 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C -0.024 4.024 23 C -0.107 4.107 24 C -0.173 4.173 25 C -0.180 4.180 26 C -0.171 4.171 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.017 0.983 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.094 11.496 16.954 20.591 hybrid contribution -0.375 -0.569 -0.781 1.036 sum -2.470 10.927 16.174 19.675 Atomic orbital electron populations 1.21704 0.92781 1.02990 1.02287 1.21380 0.97629 1.00057 0.93253 0.89298 1.20551 0.77798 0.87173 0.84168 1.90684 1.49174 1.16781 1.84911 1.48317 1.67978 1.09122 1.08788 1.21768 0.98853 0.81445 0.99667 1.21910 0.98509 1.00531 0.95995 1.22071 1.01138 0.98291 0.95761 1.20727 0.95856 0.91379 0.86063 0.91829 1.43918 1.24075 1.44699 1.18527 1.20751 0.87776 0.92183 0.97637 1.19242 0.90276 1.06853 1.22322 0.91489 1.25079 0.95622 0.97313 1.01360 1.70067 1.08286 1.37204 1.39243 0.86195 0.79847 0.80183 0.80382 1.20286 1.21615 1.21662 1.22572 0.98730 0.98478 0.82654 1.22364 0.96565 0.99326 0.92414 1.23007 0.97701 0.99233 0.97358 1.22835 0.97471 1.00776 0.96934 1.22869 0.96159 1.02397 0.95663 0.92022 0.91616 0.91942 0.90206 0.91738 0.91769 0.91376 0.91788 0.92310 0.95875 0.93405 0.98304 0.93744 0.92341 0.89214 0.88611 0.90229 0.91564 0.90324 0.91690 0.91078 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.05 37.16 0.34 -1.08 16 2 C -0.10 -1.17 1.60 -91.77 -0.15 -1.32 16 3 H 0.09 0.85 6.21 -51.93 -0.32 0.53 16 4 C 0.52 8.36 6.42 -10.98 -0.07 8.29 16 5 O -0.54 -11.08 15.38 5.56 0.09 -11.00 16 6 N -0.61 -9.69 2.97 -172.50 -0.51 -10.20 16 7 C 0.11 1.26 6.13 -3.71 -0.02 1.24 16 8 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 9 C -0.13 -2.19 5.12 -26.69 -0.14 -2.33 16 10 C 0.17 3.49 2.76 -67.58 -0.19 3.30 16 11 H 0.06 1.40 7.88 -51.93 -0.41 0.99 16 12 N -0.59 -14.82 2.81 -173.09 -0.49 -15.30 16 13 C 0.16 3.94 7.95 59.84 0.48 4.42 16 14 C -0.26 -7.16 9.55 -15.06 -0.14 -7.30 16 15 H 0.07 1.84 7.84 -52.48 -0.41 1.43 16 16 C 0.01 0.14 5.06 -17.43 -0.09 0.06 16 17 N -0.90 -26.70 10.89 55.49 0.60 -26.09 16 18 Si 0.90 22.16 29.57 -169.99 -5.03 17.13 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 C 0.10 1.98 5.79 -3.49 -0.02 1.96 16 23 C -0.09 -0.98 2.56 -89.81 -0.23 -1.21 16 24 C -0.14 -1.15 7.59 -25.83 -0.20 -1.34 16 25 C -0.14 -1.28 8.09 -25.83 -0.21 -1.49 16 26 C -0.13 -1.53 6.88 -25.92 -0.18 -1.71 16 27 H 0.06 0.60 7.63 -51.93 -0.40 0.20 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.74 5.07 -51.93 -0.26 0.47 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.97 6.72 -51.93 -0.35 0.62 16 36 H 0.02 0.61 7.61 -51.93 -0.39 0.22 16 37 H 0.05 1.26 7.14 -51.93 -0.37 0.89 16 38 H 0.00 -0.03 6.46 -51.93 -0.34 -0.37 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.06 1.18 7.53 -51.93 -0.39 0.79 16 41 H 0.09 2.13 7.03 -51.93 -0.37 1.77 16 42 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 0.60 7.99 -51.93 -0.41 0.18 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -31.71 364.60 -9.45 -41.15 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.63 Total: -0.90 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.98 Total: -0.29 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.39 Total: -51.60 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.71 -9.45 -41.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027460948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.579 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds