Wall clock time and date at job start Fri Apr 10 2020 20:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.50707 * 109.47472 * 239.99909 * 2 1 3 5 5 O 1.21280 * 120.00170 * 261.05735 * 4 2 1 6 6 N 1.34777 * 119.99640 * 81.04940 * 4 2 1 7 7 C 1.46924 * 120.63110 * 3.78074 * 6 4 2 8 8 C 1.53195 * 108.77384 * 126.36946 * 7 6 4 9 9 C 1.53039 * 109.31772 * 54.63169 * 8 7 6 10 10 C 1.53040 * 109.53637 * 298.63850 * 9 8 7 11 11 H 1.09000 * 109.49612 * 301.37723 * 10 9 8 12 12 N 1.46499 * 109.49676 * 181.31170 * 10 9 8 13 13 C 1.46503 * 120.00445 * 299.99878 * 12 10 9 14 14 C 1.36941 * 119.99934 * 119.99926 * 12 10 9 15 15 H 1.08002 * 120.00084 * 19.54572 * 14 12 10 16 16 C 1.38810 * 120.00016 * 199.55188 * 14 12 10 17 17 N 1.31613 * 120.00191 * 15.38047 * 16 14 12 18 18 Si 1.86802 * 119.99996 * 195.38877 * 16 14 12 19 19 H 1.48496 * 109.47244 * 94.96329 * 18 16 14 20 20 H 1.48500 * 109.47134 * 214.97002 * 18 16 14 21 21 H 1.48507 * 109.46820 * 334.96674 * 18 16 14 22 22 C 1.46926 * 120.62840 * 183.49677 * 6 4 2 23 23 C 1.53002 * 109.47274 * 119.99865 * 2 1 3 24 24 C 1.53782 * 113.61367 * 179.97438 * 23 2 1 25 25 C 1.53789 * 87.07785 * 139.98311 * 24 23 2 26 26 C 1.53782 * 87.17278 * 334.52452 * 25 24 23 27 27 H 1.08993 * 109.47273 * 295.84667 * 1 2 3 28 28 H 1.08999 * 109.47452 * 55.85079 * 1 2 3 29 29 H 1.09002 * 109.47145 * 175.84382 * 1 2 3 30 30 H 1.09003 * 109.58408 * 246.15265 * 7 6 4 31 31 H 1.09000 * 109.58818 * 6.43640 * 7 6 4 32 32 H 1.08996 * 109.49878 * 174.58721 * 8 7 6 33 33 H 1.09003 * 109.49736 * 294.67996 * 8 7 6 34 34 H 1.09007 * 109.45706 * 58.65347 * 9 8 7 35 35 H 1.08992 * 109.46511 * 178.61477 * 9 8 7 36 36 H 1.08997 * 109.46801 * 95.20973 * 13 12 10 37 37 H 1.08996 * 109.47400 * 215.21423 * 13 12 10 38 38 H 1.09000 * 109.46827 * 335.21248 * 13 12 10 39 39 H 0.97000 * 120.00306 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.58772 * 353.42175 * 22 6 4 41 41 H 1.08999 * 109.58734 * 113.84471 * 22 6 4 42 42 H 1.09002 * 112.84473 * 48.80625 * 23 2 1 43 43 H 1.08993 * 113.61562 * 25.43860 * 24 23 2 44 44 H 1.08997 * 113.61437 * 254.52814 * 24 23 2 45 45 H 1.08997 * 113.61532 * 89.11724 * 25 24 23 46 46 H 1.08998 * 113.61208 * 219.93207 * 25 24 23 47 47 H 1.08998 * 113.61068 * 140.01949 * 26 25 24 48 48 H 1.08999 * 113.61506 * 270.92581 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3885 -1.8676 -1.1597 6 7 2.0858 -0.0598 -2.4096 7 6 1.7364 1.3647 -2.4950 8 6 2.8931 2.1170 -3.1606 9 6 3.2115 1.4660 -4.5085 10 6 3.6434 0.0147 -4.2865 11 1 4.5164 -0.0094 -3.6344 12 7 3.9779 -0.5983 -5.5744 13 6 2.9643 -0.6884 -6.6282 14 6 5.2383 -1.0871 -5.7932 15 1 5.8820 -1.3148 -4.9564 16 6 5.6886 -1.2898 -7.0904 17 7 5.0483 -0.7434 -8.1022 18 14 7.2033 -2.3382 -7.4003 19 1 6.7876 -3.7310 -7.7040 20 1 7.9609 -1.7854 -8.5516 21 1 8.0656 -2.3315 -6.1912 22 6 2.5006 -0.7601 -3.6328 23 6 2.0400 -0.7212 1.2493 24 6 3.5738 -0.7773 1.3451 25 6 3.4111 -0.5055 2.8500 26 6 2.0727 0.1692 2.5059 27 1 -0.3633 0.4480 0.9248 28 1 -0.3634 0.5769 -0.8504 29 1 -0.3633 -1.0250 -0.0745 30 1 0.8318 1.4839 -3.0914 31 1 1.5685 1.7605 -1.4934 32 1 2.6081 3.1573 -3.3173 33 1 3.7729 2.0732 -2.5186 34 1 2.3240 1.4881 -5.1410 35 1 4.0178 2.0144 -4.9953 36 1 3.0666 0.1605 -7.3043 37 1 3.1008 -1.6152 -7.1854 38 1 1.9712 -0.6775 -6.1790 39 1 5.3628 -0.8854 -9.0088 40 1 2.8392 -1.7652 -3.3815 41 1 1.6596 -0.8178 -4.3239 42 1 1.5573 -1.6856 1.4079 43 1 4.0746 0.0279 0.8077 44 1 3.9896 -1.7597 1.1214 45 1 3.3029 -1.4103 3.4480 46 1 4.1555 0.1814 3.2526 47 1 1.2775 -0.0496 3.2186 48 1 2.1639 1.2327 2.2852 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027460949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:38 Heat of formation + Delta-G solvation = -0.260945 kcal Electronic energy + Delta-G solvation = -25227.029350 eV Core-core repulsion = 21896.957779 eV Total energy + Delta-G solvation = -3330.071571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44083 -38.67341 -37.15859 -35.09387 -33.20954 -31.99162 -31.27002 -28.73508 -26.24512 -25.99804 -25.46203 -25.20707 -23.71289 -22.40019 -21.54646 -19.74639 -19.14770 -18.49487 -17.07834 -16.69607 -15.97847 -15.31434 -15.24012 -14.83025 -14.54400 -14.09143 -13.91362 -13.69715 -13.41963 -13.02956 -12.77849 -12.63128 -12.52266 -12.41341 -12.32567 -12.13646 -11.96507 -11.75621 -11.36565 -11.02623 -10.91484 -10.83403 -10.68259 -10.54040 -10.39645 -10.36777 -10.28728 -10.18481 -10.08399 -9.83682 -9.74110 -9.30290 -8.58206 -8.26776 -6.76904 -5.70206 -3.13298 2.89100 3.23167 3.41604 3.48296 3.49880 4.35553 4.50325 4.52187 4.56038 4.75496 4.88734 4.89386 5.05324 5.17228 5.23386 5.24481 5.32666 5.46272 5.54884 5.57657 5.59946 5.61908 5.64986 5.67919 5.76802 5.78820 5.84040 5.91147 5.97181 6.02560 6.10977 6.17951 6.20139 6.25315 6.40856 6.43967 6.54571 6.68874 6.82515 6.97065 7.02437 7.40935 7.72007 7.73255 7.84403 8.39428 8.48058 9.25572 9.89055 10.36145 11.34812 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.003959 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.364517 B = 7071.045888 C = 7743.171053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.091 0.909 4 C 0.517 3.483 5 O -0.540 6.540 6 N -0.606 5.606 7 C 0.107 3.893 8 C -0.133 4.133 9 C -0.132 4.132 10 C 0.170 3.830 11 H 0.063 0.937 12 N -0.594 5.594 13 C 0.163 3.837 14 C -0.253 4.253 15 H 0.069 0.931 16 C 0.001 3.999 17 N -0.908 5.908 18 Si 0.903 3.097 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.097 3.903 23 C -0.088 4.088 24 C -0.132 4.132 25 C -0.143 4.143 26 C -0.135 4.135 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.043 0.957 38 H -0.002 1.002 39 H 0.251 0.749 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 6.617 18.011 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.109 0.891 4 C 0.304 3.696 5 O -0.417 6.417 6 N -0.340 5.340 7 C -0.017 4.017 8 C -0.172 4.172 9 C -0.172 4.172 10 C 0.060 3.940 11 H 0.081 0.919 12 N -0.315 5.315 13 C 0.018 3.982 14 C -0.382 4.382 15 H 0.087 0.913 16 C -0.197 4.197 17 N -0.553 5.553 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.205 1.205 22 C -0.027 4.027 23 C -0.106 4.106 24 C -0.170 4.170 25 C -0.181 4.181 26 C -0.173 4.173 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.017 0.983 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.537 5.959 17.824 21.075 hybrid contribution 0.804 -0.379 -0.509 1.024 sum -8.732 5.580 17.315 20.179 Atomic orbital electron populations 1.21696 0.92884 1.02780 1.02338 1.21392 0.97497 1.00277 0.93235 0.89060 1.20544 0.77900 0.87038 0.84090 1.90675 1.48430 1.17472 1.85122 1.48209 1.66617 1.10604 1.08549 1.21790 0.97962 0.80781 1.01120 1.21939 0.98101 0.98811 0.98306 1.22118 1.01541 0.98390 0.95114 1.20477 0.94896 0.89931 0.88647 0.91855 1.43922 1.09606 1.67967 1.10045 1.20783 0.86551 1.01043 0.89792 1.19273 0.91173 1.35924 0.91835 0.91281 1.24912 0.98389 1.00360 0.96007 1.70096 1.41640 1.45225 0.98363 0.86242 0.82534 0.80369 0.77478 1.21535 1.21846 1.20462 1.22289 0.98531 0.97918 0.83938 1.22407 0.96769 0.99059 0.92391 1.22864 0.95956 1.02556 0.95584 1.22810 0.97557 1.00653 0.97065 1.23027 0.97789 0.99122 0.97351 0.91534 0.92160 0.92074 0.91629 0.90220 0.91349 0.91852 0.92492 0.91537 0.95214 0.93832 0.98340 0.93836 0.89295 0.92064 0.88722 0.90537 0.91003 0.90365 0.91667 0.91608 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.07 37.15 0.34 -0.93 16 2 C -0.10 -1.12 1.64 -91.77 -0.15 -1.27 16 3 H 0.09 0.86 6.11 -51.93 -0.32 0.54 16 4 C 0.52 7.95 6.44 -10.98 -0.07 7.88 16 5 O -0.54 -10.48 15.21 5.56 0.08 -10.39 16 6 N -0.61 -9.25 2.98 -173.03 -0.52 -9.77 16 7 C 0.11 1.25 5.82 -3.71 -0.02 1.23 16 8 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 9 C -0.13 -2.30 5.15 -26.69 -0.14 -2.44 16 10 C 0.17 3.50 2.72 -68.03 -0.19 3.32 16 11 H 0.06 1.39 7.84 -51.93 -0.41 0.99 16 12 N -0.59 -14.92 2.82 -173.60 -0.49 -15.41 16 13 C 0.16 4.00 8.03 59.85 0.48 4.48 16 14 C -0.25 -7.06 9.62 -15.06 -0.14 -7.20 16 15 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 16 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 17 N -0.91 -26.57 10.64 55.49 0.59 -25.97 16 18 Si 0.90 22.30 29.58 -169.99 -5.03 17.27 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.10 1.82 5.77 -3.93 -0.02 1.80 16 23 C -0.09 -0.94 2.60 -89.66 -0.23 -1.18 16 24 C -0.13 -1.54 6.72 -25.91 -0.17 -1.72 16 25 C -0.14 -1.30 8.07 -25.91 -0.21 -1.51 16 26 C -0.14 -1.13 7.65 -25.78 -0.20 -1.32 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.51 7.55 -51.93 -0.39 0.12 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.72 5.30 -51.93 -0.28 0.45 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.00 7.72 -51.92 -0.40 0.60 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.03 0.78 7.41 -51.93 -0.38 0.40 16 37 H 0.04 1.16 7.18 -51.93 -0.37 0.79 16 38 H 0.00 -0.04 6.35 -51.93 -0.33 -0.37 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.09 1.92 7.00 -51.93 -0.36 1.55 16 41 H 0.06 1.15 6.48 -51.93 -0.34 0.81 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.60 7.97 -51.93 -0.41 0.19 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -31.35 363.70 -9.47 -40.82 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.61 Total: -1.24 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.98 Total: -0.80 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.41 Total: -51.15 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.35 -9.47 -40.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027460949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.559 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds