Wall clock time and date at job start Fri Apr 10 2020 20:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.50707 * 109.47472 * 239.99909 * 2 1 3 5 5 O 1.21280 * 120.00170 * 261.05735 * 4 2 1 6 6 N 1.34777 * 119.99640 * 81.04940 * 4 2 1 7 7 C 1.46924 * 120.63110 * 3.78074 * 6 4 2 8 8 C 1.53195 * 108.77384 * 126.36946 * 7 6 4 9 9 C 1.53039 * 109.31772 * 54.63169 * 8 7 6 10 10 C 1.53040 * 109.53637 * 298.63850 * 9 8 7 11 11 H 1.09000 * 109.49612 * 301.37723 * 10 9 8 12 12 N 1.46499 * 109.49676 * 181.31170 * 10 9 8 13 13 C 1.46503 * 120.00445 * 299.99878 * 12 10 9 14 14 C 1.36941 * 119.99934 * 119.99926 * 12 10 9 15 15 H 1.08002 * 120.00084 * 19.54572 * 14 12 10 16 16 C 1.38810 * 120.00016 * 199.55188 * 14 12 10 17 17 N 1.31613 * 120.00191 * 15.38047 * 16 14 12 18 18 Si 1.86802 * 119.99996 * 195.38877 * 16 14 12 19 19 H 1.48496 * 109.47244 * 94.96329 * 18 16 14 20 20 H 1.48500 * 109.47134 * 214.97002 * 18 16 14 21 21 H 1.48507 * 109.46820 * 334.96674 * 18 16 14 22 22 C 1.46926 * 120.62840 * 183.49677 * 6 4 2 23 23 C 1.53002 * 109.47274 * 119.99865 * 2 1 3 24 24 C 1.53782 * 113.61367 * 179.97438 * 23 2 1 25 25 C 1.53789 * 87.07785 * 139.98311 * 24 23 2 26 26 C 1.53782 * 87.17278 * 334.52452 * 25 24 23 27 27 H 1.08993 * 109.47273 * 295.84667 * 1 2 3 28 28 H 1.08999 * 109.47452 * 55.85079 * 1 2 3 29 29 H 1.09002 * 109.47145 * 175.84382 * 1 2 3 30 30 H 1.09003 * 109.58408 * 246.15265 * 7 6 4 31 31 H 1.09000 * 109.58818 * 6.43640 * 7 6 4 32 32 H 1.08996 * 109.49878 * 174.58721 * 8 7 6 33 33 H 1.09003 * 109.49736 * 294.67996 * 8 7 6 34 34 H 1.09007 * 109.45706 * 58.65347 * 9 8 7 35 35 H 1.08992 * 109.46511 * 178.61477 * 9 8 7 36 36 H 1.08997 * 109.46801 * 95.20973 * 13 12 10 37 37 H 1.08996 * 109.47400 * 215.21423 * 13 12 10 38 38 H 1.09000 * 109.46827 * 335.21248 * 13 12 10 39 39 H 0.97000 * 120.00306 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.58772 * 353.42175 * 22 6 4 41 41 H 1.08999 * 109.58734 * 113.84471 * 22 6 4 42 42 H 1.09002 * 112.84473 * 48.80625 * 23 2 1 43 43 H 1.08993 * 113.61562 * 25.43860 * 24 23 2 44 44 H 1.08997 * 113.61437 * 254.52814 * 24 23 2 45 45 H 1.08997 * 113.61532 * 89.11724 * 25 24 23 46 46 H 1.08998 * 113.61208 * 219.93207 * 25 24 23 47 47 H 1.08998 * 113.61068 * 140.01949 * 26 25 24 48 48 H 1.08999 * 113.61506 * 270.92581 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3885 -1.8676 -1.1597 6 7 2.0858 -0.0598 -2.4096 7 6 1.7364 1.3647 -2.4950 8 6 2.8931 2.1170 -3.1606 9 6 3.2115 1.4660 -4.5085 10 6 3.6434 0.0147 -4.2865 11 1 4.5164 -0.0094 -3.6344 12 7 3.9779 -0.5983 -5.5744 13 6 2.9643 -0.6884 -6.6282 14 6 5.2383 -1.0871 -5.7932 15 1 5.8820 -1.3148 -4.9564 16 6 5.6886 -1.2898 -7.0904 17 7 5.0483 -0.7434 -8.1022 18 14 7.2033 -2.3382 -7.4003 19 1 6.7876 -3.7310 -7.7040 20 1 7.9609 -1.7854 -8.5516 21 1 8.0656 -2.3315 -6.1912 22 6 2.5006 -0.7601 -3.6328 23 6 2.0400 -0.7212 1.2493 24 6 3.5738 -0.7773 1.3451 25 6 3.4111 -0.5055 2.8500 26 6 2.0727 0.1692 2.5059 27 1 -0.3633 0.4480 0.9248 28 1 -0.3634 0.5769 -0.8504 29 1 -0.3633 -1.0250 -0.0745 30 1 0.8318 1.4839 -3.0914 31 1 1.5685 1.7605 -1.4934 32 1 2.6081 3.1573 -3.3173 33 1 3.7729 2.0732 -2.5186 34 1 2.3240 1.4881 -5.1410 35 1 4.0178 2.0144 -4.9953 36 1 3.0666 0.1605 -7.3043 37 1 3.1008 -1.6152 -7.1854 38 1 1.9712 -0.6775 -6.1790 39 1 5.3628 -0.8854 -9.0088 40 1 2.8392 -1.7652 -3.3815 41 1 1.6596 -0.8178 -4.3239 42 1 1.5573 -1.6856 1.4079 43 1 4.0746 0.0279 0.8077 44 1 3.9896 -1.7597 1.1214 45 1 3.3029 -1.4103 3.4480 46 1 4.1555 0.1814 3.2526 47 1 1.2775 -0.0496 3.2186 48 1 2.1639 1.2327 2.2852 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027460949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:37 Heat of formation + Delta-G solvation = -18.024881 kcal Electronic energy + Delta-G solvation = -25227.799653 eV Core-core repulsion = 21896.957779 eV Total energy + Delta-G solvation = -3330.841873 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58279 -39.74719 -38.53065 -36.78132 -34.41792 -33.36527 -32.86427 -30.40268 -28.09596 -27.08975 -26.39625 -26.20890 -25.39182 -23.48537 -23.00822 -20.91861 -20.28469 -19.72592 -18.79891 -18.17652 -17.21041 -16.88423 -16.27618 -16.12703 -15.79228 -15.55746 -15.36398 -15.10874 -14.77298 -14.48972 -14.17238 -13.79550 -13.73291 -13.47993 -13.37328 -13.28132 -13.05231 -12.89895 -12.84083 -12.58173 -12.52022 -12.30342 -12.24000 -12.04668 -11.92751 -11.79446 -11.66411 -11.42513 -11.34987 -11.22238 -10.96048 -10.70749 -10.49175 -9.66844 -8.81414 -7.86757 -5.31934 1.41606 1.43900 1.52434 1.70065 2.02119 2.48414 3.25538 3.43134 3.59511 3.71383 3.76751 3.89553 3.97765 4.03723 4.07845 4.14018 4.24038 4.30861 4.35764 4.41716 4.45206 4.63599 4.72547 4.76789 4.86002 4.87331 4.87766 4.89812 4.91888 4.99874 5.02650 5.05318 5.12287 5.14203 5.20203 5.26084 5.32020 5.42496 5.43559 5.47780 5.54396 5.61558 5.65105 5.69337 6.27915 6.53463 7.11087 7.26323 7.83471 8.24741 9.16005 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.003959 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.364517 B = 7071.045888 C = 7743.171053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.119 0.881 4 C 0.509 3.491 5 O -0.591 6.591 6 N -0.607 5.607 7 C 0.103 3.897 8 C -0.123 4.123 9 C -0.122 4.122 10 C 0.168 3.832 11 H 0.040 0.960 12 N -0.611 5.611 13 C 0.181 3.819 14 C -0.266 4.266 15 H 0.061 0.939 16 C -0.048 4.048 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.273 1.273 22 C 0.113 3.887 23 C -0.093 4.093 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.116 4.116 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.009 0.991 37 H 0.013 0.987 38 H 0.030 0.970 39 H 0.249 0.751 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.402 9.069 20.372 25.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.137 0.863 4 C 0.299 3.701 5 O -0.472 6.472 6 N -0.340 5.340 7 C -0.018 4.018 8 C -0.162 4.162 9 C -0.162 4.162 10 C 0.061 3.939 11 H 0.058 0.942 12 N -0.334 5.334 13 C 0.037 3.963 14 C -0.396 4.396 15 H 0.079 0.921 16 C -0.243 4.243 17 N -0.580 5.580 18 Si 0.793 3.207 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.198 1.198 22 C -0.012 4.012 23 C -0.112 4.112 24 C -0.184 4.184 25 C -0.176 4.176 26 C -0.153 4.153 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.031 0.969 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.182 8.453 20.226 24.608 hybrid contribution 1.327 -1.181 -1.213 2.151 sum -9.854 7.272 19.013 22.616 Atomic orbital electron populations 1.21723 0.90879 1.02269 1.04455 1.21462 0.98907 1.00694 0.90268 0.86314 1.21536 0.76752 0.86670 0.85158 1.90658 1.50556 1.20041 1.85897 1.48311 1.66222 1.12173 1.07254 1.22131 0.97884 0.78008 1.03761 1.21905 0.98708 1.00478 0.95112 1.21933 1.00543 0.95663 0.98052 1.20605 0.94791 0.92201 0.86339 0.94188 1.44126 1.08939 1.68771 1.11565 1.20486 0.87979 0.98481 0.89389 1.19491 0.92271 1.36045 0.91824 0.92146 1.25611 1.01303 1.01588 0.95786 1.70231 1.43065 1.46304 0.98398 0.85291 0.79505 0.78550 0.77376 1.21502 1.21537 1.19764 1.21756 0.97626 0.96211 0.85607 1.22433 0.95534 0.99305 0.93956 1.22913 0.96852 1.00530 0.98075 1.22806 0.98718 1.01188 0.94849 1.22972 0.97360 0.99412 0.95543 0.88600 0.90923 0.93887 0.89721 0.86210 0.87694 0.92154 0.92257 0.94040 0.97320 0.96864 0.95118 0.94145 0.93042 0.91808 0.90436 0.90962 0.94441 0.90265 0.90514 0.89889 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.07 71.98 0.65 -1.28 16 2 C -0.09 -1.75 1.64 -11.54 -0.02 -1.77 16 3 H 0.12 1.61 6.11 -2.39 -0.01 1.60 16 4 C 0.51 15.32 6.44 87.66 0.56 15.88 16 5 O -0.59 -23.92 15.21 -3.03 -0.05 -23.97 16 6 N -0.61 -17.72 2.98 -819.73 -2.44 -20.16 16 7 C 0.10 2.00 5.82 86.36 0.50 2.51 16 8 C -0.12 -2.79 6.08 30.67 0.19 -2.60 16 9 C -0.12 -4.18 5.15 30.62 0.16 -4.02 16 10 C 0.17 7.11 2.72 44.93 0.12 7.24 16 11 H 0.04 1.84 7.84 -2.39 -0.02 1.82 16 12 N -0.61 -31.82 2.82 -703.16 -1.98 -33.80 16 13 C 0.18 9.16 8.03 127.77 1.03 10.19 16 14 C -0.27 -15.43 9.62 84.03 0.81 -14.62 16 15 H 0.06 3.52 7.80 -2.91 -0.02 3.49 16 16 C -0.05 -2.76 5.06 84.86 0.43 -2.33 16 17 N -0.93 -56.16 10.64 21.65 0.23 -55.93 16 18 Si 0.96 46.99 29.58 68.60 2.03 49.01 16 19 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 22 C 0.11 4.32 5.77 86.22 0.50 4.82 16 23 C -0.09 -1.86 2.60 -10.17 -0.03 -1.88 16 24 C -0.15 -3.38 6.72 31.12 0.21 -3.17 16 25 C -0.14 -2.23 8.07 31.12 0.25 -1.98 16 26 C -0.12 -1.48 7.65 31.21 0.24 -1.24 16 27 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.88 7.55 -2.39 -0.02 0.86 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.12 1.44 5.30 -2.39 -0.01 1.43 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.99 7.72 -2.38 -0.02 1.97 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.01 0.46 7.41 -2.39 -0.02 0.45 16 37 H 0.01 0.71 7.18 -2.39 -0.02 0.69 16 38 H 0.03 1.31 6.35 -2.39 -0.02 1.30 16 39 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 40 H 0.05 2.34 7.00 -2.39 -0.02 2.33 16 41 H 0.06 2.38 6.48 -2.39 -0.02 2.36 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 44 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.10 0.94 7.97 -2.39 -0.02 0.92 16 Total: -1.00 -73.65 363.70 4.30 -69.35 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.91 Total: 9.76 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 5.60 Total: 5.73 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -4.19 Total: -109.89 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -73.65 4.30 -69.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027460949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.324 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds