Wall clock time and date at job start Fri Apr 10 2020 20:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47001 * 2 1 4 4 C 1.50705 * 109.47060 * 119.99278 * 2 1 3 5 5 O 1.21278 * 119.99716 * 113.04085 * 4 2 1 6 6 N 1.34772 * 119.99971 * 293.03883 * 4 2 1 7 7 C 1.46931 * 120.63071 * 176.60296 * 6 4 2 8 8 C 1.53188 * 108.89177 * 126.34527 * 7 6 4 9 9 C 1.53354 * 109.15238 * 54.57929 * 8 7 6 10 10 C 1.53042 * 109.60721 * 298.71481 * 9 8 7 11 11 H 1.09005 * 109.49436 * 301.42012 * 10 9 8 12 12 N 1.46493 * 109.49733 * 181.32334 * 10 9 8 13 13 C 1.46496 * 120.00034 * 300.15575 * 12 10 9 14 14 C 1.36936 * 119.99888 * 120.16192 * 12 10 9 15 15 H 1.07996 * 120.00530 * 19.70438 * 14 12 10 16 16 C 1.38817 * 119.99898 * 199.71185 * 14 12 10 17 17 N 1.31626 * 120.00038 * 15.35344 * 16 14 12 18 18 Si 1.86801 * 119.99964 * 195.35951 * 16 14 12 19 19 H 1.48501 * 109.47477 * 59.99789 * 18 16 14 20 20 H 1.48501 * 109.46998 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46989 * 299.99355 * 18 16 14 22 22 C 1.46930 * 120.63245 * 356.62880 * 6 4 2 23 23 C 1.53003 * 109.47579 * 239.99541 * 2 1 3 24 24 C 1.53778 * 113.61547 * 159.13495 * 23 2 1 25 25 C 1.53951 * 87.02085 * 220.04702 * 24 23 2 26 26 C 1.53779 * 87.11010 * 25.36487 * 25 24 23 27 27 H 1.09002 * 109.46914 * 184.31654 * 1 2 3 28 28 H 1.08990 * 109.47436 * 304.32209 * 1 2 3 29 29 H 1.08998 * 109.46928 * 64.32216 * 1 2 3 30 30 H 1.09002 * 109.58705 * 246.20845 * 7 6 4 31 31 H 1.08996 * 109.58218 * 6.48395 * 7 6 4 32 32 H 1.08998 * 109.49732 * 174.66210 * 8 7 6 33 33 H 1.08999 * 109.49957 * 294.75568 * 8 7 6 34 34 H 1.08992 * 109.42157 * 178.67390 * 9 8 7 35 35 H 1.08998 * 109.42909 * 58.75665 * 9 8 7 36 36 H 1.09003 * 109.46973 * 94.90760 * 13 12 10 37 37 H 1.09000 * 109.47687 * 214.90125 * 13 12 10 38 38 H 1.08996 * 109.47507 * 334.90721 * 13 12 10 39 39 H 0.96994 * 119.99792 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.58588 * 353.37587 * 22 6 4 41 41 H 1.09001 * 109.58377 * 113.79333 * 22 6 4 42 42 H 1.08997 * 112.84706 * 290.33030 * 23 2 1 43 43 H 1.08999 * 113.61440 * 334.56938 * 24 23 2 44 44 H 1.09002 * 113.61371 * 105.46890 * 24 23 2 45 45 H 1.09000 * 113.54075 * 270.81061 * 25 24 23 46 46 H 1.09005 * 113.66518 * 139.93226 * 25 24 23 47 47 H 1.08996 * 113.61598 * 220.09016 * 26 25 24 48 48 H 1.08999 * 113.61780 * 89.18186 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.6220 -1.7647 1.1239 6 7 1.8263 -0.1737 2.4496 7 6 2.2440 -0.8895 3.6629 8 6 3.1316 0.0342 4.5029 9 6 2.3827 1.3456 4.7696 10 6 2.0769 2.0417 3.4414 11 1 3.0082 2.2345 2.9089 12 7 1.3896 3.3092 3.7006 13 6 0.1077 3.3157 4.4097 14 6 1.9453 4.4878 3.2798 15 1 2.6955 4.4842 2.5029 16 6 1.5445 5.6874 3.8519 17 7 0.8723 5.6847 4.9836 18 14 1.9590 7.3056 3.0157 19 1 1.3505 7.3330 1.6613 20 1 1.4221 8.4311 3.8219 21 1 3.4334 7.4389 2.8988 22 6 1.1792 1.1378 2.5907 23 6 2.0401 -0.7213 -1.2492 24 6 3.4868 -0.3577 -1.6229 25 6 3.0235 -0.3622 -3.0911 26 6 1.6122 -0.0511 -2.5654 27 1 -0.3633 -1.0248 0.0774 28 1 -0.3634 0.5794 0.8486 29 1 -0.3633 0.4453 -0.9262 30 1 1.3643 -1.1750 4.2398 31 1 2.8046 -1.7822 3.3857 32 1 3.3696 -0.4517 5.4491 33 1 4.0529 0.2458 3.9602 34 1 3.0012 1.9970 5.3870 35 1 1.4495 1.1308 5.2903 36 1 0.2809 3.4905 5.4716 37 1 -0.5249 4.1081 4.0097 38 1 -0.3866 2.3536 4.2757 39 1 0.5919 6.5228 5.3831 40 1 1.0393 1.5841 1.6061 41 1 0.2127 1.0176 3.0802 42 1 1.8522 -1.7947 -1.2244 43 1 3.7963 0.6245 -1.2657 44 1 4.2081 -1.1408 -1.3893 45 1 3.1058 -1.3376 -3.5706 46 1 3.4540 0.4418 -3.6882 47 1 0.8223 -0.5871 -3.0916 48 1 1.4083 1.0150 -2.4663 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027460950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:41 Heat of formation + Delta-G solvation = -1.954076 kcal Electronic energy + Delta-G solvation = -25415.025830 eV Core-core repulsion = 22084.880839 eV Total energy + Delta-G solvation = -3330.144991 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.41375 -38.65757 -37.23572 -34.91645 -33.47375 -31.91800 -31.16264 -28.69128 -26.29594 -26.06490 -25.26417 -25.20879 -23.57716 -22.77131 -21.18409 -19.65243 -19.28644 -18.52915 -16.96949 -16.70411 -15.98502 -15.32347 -15.13588 -14.78585 -14.58373 -14.11968 -13.93323 -13.76673 -13.37036 -12.99292 -12.77916 -12.68865 -12.48680 -12.33904 -12.15813 -12.13376 -11.87629 -11.59841 -11.17860 -11.04978 -10.95250 -10.85446 -10.61184 -10.50935 -10.41167 -10.36216 -10.29278 -10.22132 -10.10176 -9.93353 -9.77243 -9.34647 -8.63910 -8.30184 -6.83922 -5.77236 -3.21010 2.87631 3.24554 3.36092 3.42123 3.42685 4.40400 4.50261 4.61947 4.65634 4.82053 4.92545 5.15989 5.19732 5.27772 5.31691 5.37756 5.40779 5.44991 5.55115 5.65248 5.68482 5.70428 5.72048 5.74421 5.80563 5.87232 5.91640 5.96846 6.00628 6.05305 6.10956 6.22084 6.23641 6.28280 6.38209 6.42065 6.53845 6.67155 6.80234 6.87007 6.96372 7.32844 7.66112 7.69691 7.76682 8.32716 8.43308 9.18006 9.81413 10.28746 11.27702 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.004891 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.331281 B = 5723.970938 C = 6935.956629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.097 0.903 4 C 0.522 3.478 5 O -0.554 6.554 6 N -0.605 5.605 7 C 0.112 3.888 8 C -0.131 4.131 9 C -0.132 4.132 10 C 0.167 3.833 11 H 0.065 0.935 12 N -0.593 5.593 13 C 0.162 3.838 14 C -0.257 4.257 15 H 0.069 0.931 16 C 0.004 3.996 17 N -0.906 5.906 18 Si 0.903 3.097 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.089 3.911 23 C -0.087 4.087 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.136 4.136 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.029 0.971 37 H 0.044 0.956 38 H -0.001 1.001 39 H 0.253 0.747 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -11.987 -9.047 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 H 0.115 0.885 4 C 0.310 3.690 5 O -0.432 6.432 6 N -0.338 5.338 7 C -0.010 4.010 8 C -0.170 4.170 9 C -0.171 4.171 10 C 0.058 3.942 11 H 0.083 0.917 12 N -0.315 5.315 13 C 0.018 3.982 14 C -0.387 4.387 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.551 5.551 18 Si 0.733 3.267 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.210 1.210 22 C -0.035 4.035 23 C -0.105 4.105 24 C -0.172 4.172 25 C -0.180 4.180 26 C -0.174 4.174 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.017 0.983 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.137 -12.356 -8.984 15.278 hybrid contribution 0.157 1.112 -0.108 1.128 sum 0.294 -11.244 -9.092 14.463 Atomic orbital electron populations 1.21829 0.92859 1.02453 1.03146 1.21337 0.97593 1.00700 0.92709 0.88459 1.20609 0.78679 0.85241 0.84444 1.90620 1.42463 1.23695 1.86466 1.48185 1.59646 1.20388 1.05575 1.21549 0.98484 0.95591 0.85389 1.21973 0.98876 0.96812 0.99327 1.22167 0.99960 0.95059 0.99958 1.20585 0.94312 0.86157 0.93140 0.91701 1.43932 1.20228 1.00571 1.66777 1.20787 0.85872 0.94938 0.96623 1.19176 1.21137 0.83732 1.14620 0.91332 1.24929 1.00664 0.97960 0.95928 1.70083 1.42604 1.25542 1.16848 0.86359 0.78042 0.83425 0.78859 1.21089 1.21638 1.20980 1.22652 0.97021 0.81679 1.02181 1.22345 0.96178 1.00140 0.91876 1.22947 0.96728 1.01849 0.95685 1.22823 0.96977 1.01538 0.96677 1.22964 0.96890 1.01044 0.96455 0.92491 0.91362 0.91403 0.92017 0.89644 0.91443 0.91937 0.91571 0.92507 0.95258 0.93740 0.98301 0.93683 0.89605 0.91592 0.88629 0.90288 0.91411 0.90475 0.91619 0.91634 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.72 37.16 0.32 -1.34 16 2 C -0.10 -1.32 1.60 -91.77 -0.15 -1.47 16 3 H 0.10 1.28 7.00 -51.93 -0.36 0.92 16 4 C 0.52 8.13 6.97 -10.98 -0.08 8.05 16 5 O -0.55 -9.98 15.26 5.56 0.08 -9.90 16 6 N -0.61 -9.26 2.97 -172.77 -0.51 -9.78 16 7 C 0.11 1.61 6.43 -3.71 -0.02 1.59 16 8 C -0.13 -1.89 6.11 -26.45 -0.16 -2.05 16 9 C -0.13 -2.30 5.15 -26.53 -0.14 -2.44 16 10 C 0.17 3.21 2.74 -67.82 -0.19 3.03 16 11 H 0.06 1.32 7.85 -51.93 -0.41 0.91 16 12 N -0.59 -13.88 2.82 -173.36 -0.49 -14.37 16 13 C 0.16 3.75 8.03 59.84 0.48 4.23 16 14 C -0.26 -6.74 9.62 -15.06 -0.14 -6.88 16 15 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 16 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 17 N -0.91 -25.54 10.65 55.49 0.59 -24.95 16 18 Si 0.90 21.24 29.58 -169.99 -5.03 16.21 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.09 1.44 4.41 -3.71 -0.02 1.42 16 23 C -0.09 -1.03 2.55 -89.81 -0.23 -1.26 16 24 C -0.13 -1.58 7.62 -25.83 -0.20 -1.78 16 25 C -0.14 -1.39 8.09 -25.83 -0.21 -1.60 16 26 C -0.14 -1.34 6.67 -25.92 -0.17 -1.52 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.82 5.90 -51.93 -0.31 0.51 16 29 H 0.07 0.67 7.35 -51.93 -0.38 0.29 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.26 7.00 -51.93 -0.36 0.89 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 36 H 0.03 0.74 7.43 -51.93 -0.39 0.36 16 37 H 0.04 1.12 7.16 -51.93 -0.37 0.74 16 38 H 0.00 -0.03 6.36 -51.93 -0.33 -0.36 16 39 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.09 1.36 4.87 -51.93 -0.25 1.11 16 41 H 0.07 1.08 6.50 -51.93 -0.34 0.74 16 42 H 0.10 1.24 7.81 -51.93 -0.41 0.84 16 43 H 0.08 0.95 7.99 -51.93 -0.41 0.53 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.81 8.10 -51.93 -0.42 0.38 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -28.99 360.82 -9.39 -38.38 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.49 Total: 0.98 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.98 Total: -2.01 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.41 Total: -49.10 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.99 -9.39 -38.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027460950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.431 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds