Wall clock time and date at job start Fri Apr 10 2020 20:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47450 * 2 1 4 4 C 1.50705 * 109.46491 * 119.99488 * 2 1 3 5 5 O 1.21283 * 119.99804 * 96.23727 * 4 2 1 6 6 N 1.34771 * 120.00178 * 276.23287 * 4 2 1 7 7 C 1.46931 * 120.62996 * 355.55174 * 6 4 2 8 8 C 1.53188 * 108.77482 * 233.60461 * 7 6 4 9 9 C 1.53035 * 109.31425 * 305.36339 * 8 7 6 10 10 C 1.53048 * 109.53856 * 61.36860 * 9 8 7 11 11 H 1.08997 * 109.49778 * 58.61197 * 10 9 8 12 12 N 1.46498 * 109.49850 * 178.68228 * 10 9 8 13 13 C 1.46506 * 119.99785 * 59.99747 * 12 10 9 14 14 C 1.36931 * 119.99834 * 239.72212 * 12 10 9 15 15 H 1.07999 * 120.00204 * 334.92333 * 14 12 10 16 16 C 1.38814 * 119.99844 * 154.92814 * 14 12 10 17 17 N 1.31625 * 120.00262 * 4.04550 * 16 14 12 18 18 Si 1.86805 * 120.00076 * 184.04074 * 16 14 12 19 19 H 1.48500 * 109.46972 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46698 * 119.99974 * 18 16 14 21 21 H 1.48498 * 109.47092 * 240.00204 * 18 16 14 22 22 C 1.46929 * 120.63477 * 175.54958 * 6 4 2 23 23 C 1.52999 * 109.47278 * 239.99058 * 2 1 3 24 24 C 1.53776 * 113.61424 * 157.50249 * 23 2 1 25 25 C 1.53785 * 87.08154 * 220.02330 * 24 23 2 26 26 C 1.53776 * 113.61199 * 60.00216 * 23 2 1 27 27 H 1.09002 * 109.46807 * 64.87604 * 1 2 3 28 28 H 1.08993 * 109.47134 * 184.87806 * 1 2 3 29 29 H 1.08996 * 109.47116 * 304.88177 * 1 2 3 30 30 H 1.09001 * 109.59018 * 113.81693 * 7 6 4 31 31 H 1.08997 * 109.58598 * 353.39170 * 7 6 4 32 32 H 1.09000 * 109.49863 * 185.40871 * 8 7 6 33 33 H 1.09004 * 109.49614 * 65.31856 * 8 7 6 34 34 H 1.08994 * 109.46261 * 301.34191 * 9 8 7 35 35 H 1.09009 * 109.44827 * 181.37547 * 9 8 7 36 36 H 1.09002 * 109.46722 * 264.18822 * 13 12 10 37 37 H 1.08996 * 109.47150 * 24.18940 * 13 12 10 38 38 H 1.08995 * 109.47068 * 144.18897 * 13 12 10 39 39 H 0.96996 * 119.99858 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.58335 * 6.60241 * 22 6 4 41 41 H 1.09003 * 109.58342 * 246.18400 * 22 6 4 42 42 H 1.09001 * 112.85146 * 288.81244 * 23 2 1 43 43 H 1.09004 * 113.61333 * 334.56902 * 24 23 2 44 44 H 1.09000 * 113.61917 * 105.47239 * 24 23 2 45 45 H 1.09003 * 113.61212 * 270.88293 * 25 24 23 46 46 H 1.08997 * 113.61691 * 139.98280 * 25 24 23 47 47 H 1.08996 * 113.61791 * 254.53000 * 26 23 2 48 48 H 1.09003 * 113.61754 * 25.43801 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.3419 -1.8815 1.1708 6 7 2.1373 -0.0443 2.3975 7 6 1.8593 1.3970 2.4644 8 6 3.0621 2.1021 3.0990 9 6 3.3704 1.4580 4.4525 10 6 3.7273 -0.0162 4.2484 11 1 4.5872 -0.0936 3.5831 12 7 4.0527 -0.6241 5.5409 13 6 3.0532 -0.6473 6.6119 14 6 5.2892 -1.1755 5.7462 15 1 5.8669 -1.5335 4.9070 16 6 5.7999 -1.2745 7.0332 17 7 5.0645 -0.9121 8.0629 18 14 7.5311 -1.9221 7.3038 19 1 8.1443 -2.2581 5.9937 20 1 8.3482 -0.8829 7.9802 21 1 7.4772 -3.1396 8.1524 22 6 2.5320 -0.7454 3.6269 23 6 2.0401 -0.7214 -1.2491 24 6 3.4727 -0.3280 -1.6459 25 6 2.9923 -0.3577 -3.1065 26 6 1.5812 -0.0726 -2.5656 27 1 -0.3633 0.4363 -0.9305 28 1 -0.3633 -1.0239 0.0874 29 1 -0.3633 0.5877 0.8430 30 1 0.9715 1.5701 3.0728 31 1 1.6970 1.7849 1.4588 32 1 2.8309 3.1576 3.2426 33 1 3.9280 2.0048 2.4440 34 1 2.4957 1.5338 5.0984 35 1 4.2107 1.9740 4.9171 36 1 3.2146 0.2004 7.2778 37 1 2.0550 -0.5841 6.1787 38 1 3.1465 -1.5753 7.1758 39 1 5.4213 -0.9816 8.9622 40 1 2.8134 -1.7710 3.3883 41 1 1.6990 -0.7470 4.3300 42 1 1.8758 -1.7984 -1.2127 43 1 3.7640 0.6646 -1.3021 44 1 4.2152 -1.0918 -1.4148 45 1 3.0898 -1.3354 -3.5783 46 1 3.3977 0.4499 -3.7160 47 1 0.7967 -0.6303 -3.0771 48 1 1.3554 0.9898 -2.4734 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027460951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:44 Heat of formation + Delta-G solvation = 0.301887 kcal Electronic energy + Delta-G solvation = -25156.323934 eV Core-core repulsion = 21826.276769 eV Total energy + Delta-G solvation = -3330.047165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.42560 -38.72864 -37.19265 -35.07602 -33.15076 -31.99563 -31.26401 -28.70255 -26.40544 -25.99389 -25.38427 -25.19727 -23.68759 -22.42193 -21.54640 -19.72422 -19.15395 -18.49687 -17.08244 -16.70847 -16.01556 -15.27666 -15.23880 -14.87841 -14.55013 -14.09879 -13.88970 -13.66535 -13.40875 -13.12324 -12.76923 -12.63718 -12.58868 -12.41575 -12.37725 -12.09218 -11.93317 -11.72115 -11.35542 -11.02257 -10.95558 -10.76958 -10.70655 -10.48827 -10.39787 -10.33794 -10.25194 -10.22479 -10.07841 -9.88067 -9.75380 -9.33346 -8.52263 -8.28933 -6.71004 -5.70805 -3.17753 2.88376 3.23930 3.39590 3.46869 3.49363 4.35201 4.48538 4.50606 4.54650 4.71471 4.83094 4.88377 5.05038 5.17707 5.23650 5.29888 5.33312 5.46423 5.54324 5.57637 5.58788 5.60218 5.63270 5.68721 5.75107 5.79113 5.84150 5.90756 5.94331 6.01041 6.05647 6.16192 6.19630 6.26137 6.41928 6.43261 6.54864 6.71530 6.86285 6.97747 7.03394 7.51840 7.72099 7.79895 7.87840 8.42815 8.48359 9.28392 9.88926 10.38126 11.33585 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021901 B = 0.003819 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.144412 B = 7330.191323 C = 7890.203517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.091 0.909 4 C 0.517 3.483 5 O -0.543 6.543 6 N -0.606 5.606 7 C 0.106 3.894 8 C -0.133 4.133 9 C -0.131 4.131 10 C 0.171 3.829 11 H 0.063 0.937 12 N -0.597 5.597 13 C 0.166 3.834 14 C -0.253 4.253 15 H 0.069 0.931 16 C 0.005 3.995 17 N -0.910 5.910 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.096 3.904 23 C -0.092 4.092 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.135 4.135 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.025 0.975 37 H -0.008 1.008 38 H 0.052 0.948 39 H 0.251 0.749 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 7.246 -18.069 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.109 0.891 4 C 0.304 3.696 5 O -0.420 6.420 6 N -0.339 5.339 7 C -0.017 4.017 8 C -0.172 4.172 9 C -0.171 4.171 10 C 0.061 3.939 11 H 0.082 0.918 12 N -0.319 5.319 13 C 0.022 3.978 14 C -0.382 4.382 15 H 0.086 0.914 16 C -0.192 4.192 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C -0.028 4.028 23 C -0.111 4.111 24 C -0.176 4.176 25 C -0.179 4.179 26 C -0.172 4.172 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.010 0.990 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.490 6.582 -17.870 21.278 hybrid contribution 0.956 -0.166 0.483 1.084 sum -8.534 6.416 -17.388 20.404 Atomic orbital electron populations 1.21682 0.92782 1.02825 1.02336 1.21372 0.97528 1.00259 0.93224 0.89089 1.20547 0.77642 0.87201 0.84174 1.90672 1.49750 1.16768 1.84821 1.48211 1.67558 1.09108 1.09032 1.21794 0.98232 0.80416 1.01222 1.21939 0.97787 0.99011 0.98418 1.22106 1.01635 0.98314 0.95048 1.20565 0.94589 0.89994 0.88721 0.91832 1.43891 1.12503 1.66362 1.09128 1.20861 0.86175 1.01465 0.89323 1.19289 0.93071 1.33089 0.92772 0.91363 1.25127 0.97875 1.00222 0.96011 1.70100 1.35224 1.52339 0.97877 0.86184 0.84739 0.77914 0.77801 1.20318 1.21606 1.21706 1.22409 0.98637 0.98018 0.83737 1.22437 0.96097 1.00793 0.91745 1.22956 0.96886 1.01802 0.95905 1.22786 0.96789 1.01765 0.96586 1.22950 0.96988 1.00804 0.96480 0.91446 0.92044 0.92206 0.91602 0.90202 0.91353 0.91826 0.92480 0.91598 0.95627 0.98996 0.92962 0.93841 0.89363 0.91994 0.88089 0.90324 0.91287 0.90295 0.91624 0.91555 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.06 37.16 0.34 -0.94 16 2 C -0.10 -1.13 1.69 -91.77 -0.15 -1.28 16 3 H 0.09 0.86 5.92 -51.93 -0.31 0.55 16 4 C 0.52 8.07 6.81 -10.99 -0.07 7.99 16 5 O -0.54 -10.73 15.35 5.55 0.09 -10.65 16 6 N -0.61 -9.34 2.97 -172.77 -0.51 -9.86 16 7 C 0.11 1.26 6.17 -3.71 -0.02 1.24 16 8 C -0.13 -1.72 6.08 -26.62 -0.16 -1.88 16 9 C -0.13 -2.30 5.15 -26.69 -0.14 -2.43 16 10 C 0.17 3.54 2.74 -67.81 -0.19 3.35 16 11 H 0.06 1.41 7.88 -51.93 -0.41 1.00 16 12 N -0.60 -15.07 2.82 -173.35 -0.49 -15.56 16 13 C 0.17 4.12 8.00 59.85 0.48 4.60 16 14 C -0.25 -7.07 9.59 -15.06 -0.14 -7.21 16 15 H 0.07 1.91 7.81 -52.49 -0.41 1.49 16 16 C 0.01 0.15 5.38 -17.43 -0.09 0.06 16 17 N -0.91 -26.53 10.13 55.49 0.56 -25.97 16 18 Si 0.90 22.19 29.56 -169.99 -5.02 17.16 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 C 0.10 1.81 5.79 -3.71 -0.02 1.79 16 23 C -0.09 -1.00 2.79 -89.81 -0.25 -1.25 16 24 C -0.14 -1.47 7.62 -25.92 -0.20 -1.67 16 25 C -0.14 -1.22 8.08 -25.92 -0.21 -1.43 16 26 C -0.13 -1.10 6.59 -25.92 -0.17 -1.27 16 27 H 0.07 0.49 7.28 -51.93 -0.38 0.11 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.51 8.00 -51.93 -0.42 0.10 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.73 5.40 -51.93 -0.28 0.45 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 35 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 36 H 0.03 0.68 7.44 -51.93 -0.39 0.29 16 37 H -0.01 -0.18 6.36 -51.93 -0.33 -0.51 16 38 H 0.05 1.42 7.03 -51.93 -0.37 1.06 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.09 1.92 7.00 -51.93 -0.36 1.56 16 41 H 0.06 1.17 6.50 -51.93 -0.34 0.83 16 42 H 0.10 1.30 7.62 -51.93 -0.40 0.90 16 43 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -31.41 363.28 -9.47 -40.88 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.55 Total: -1.14 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.01 Total: -0.34 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.44 Total: -51.39 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.41 -9.47 -40.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027460951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.178 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds