Wall clock time and date at job start Fri Apr 10 2020 20:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47098 * 2 1 4 4 C 1.50704 * 109.46802 * 240.00230 * 2 1 3 5 5 O 1.21282 * 120.00164 * 245.86484 * 4 2 1 6 6 N 1.34780 * 119.99753 * 65.86009 * 4 2 1 7 7 C 1.46503 * 119.99723 * 183.38348 * 6 4 2 8 8 C 1.46503 * 120.00038 * 3.38983 * 6 4 2 9 9 H 1.08994 * 110.88712 * 357.37466 * 8 6 4 10 10 C 1.55159 * 111.00145 * 233.49637 * 8 6 4 11 11 C 1.54319 * 102.94282 * 277.42787 * 10 8 6 12 12 N 1.47023 * 107.27574 * 337.80884 * 11 10 8 13 13 C 1.36932 * 125.65329 * 178.97771 * 12 11 10 14 14 H 1.08002 * 120.00077 * 179.97438 * 13 12 11 15 15 C 1.38815 * 119.99848 * 359.97438 * 13 12 11 16 16 N 1.31613 * 119.99853 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99840 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47363 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.47081 * 119.99887 * 17 15 13 20 20 H 1.48501 * 109.47275 * 239.99956 * 17 15 13 21 21 C 1.47531 * 108.70963 * 358.94031 * 12 11 10 22 22 C 1.52995 * 109.47596 * 120.00439 * 2 1 3 23 23 C 1.54271 * 110.03104 * 297.16367 * 22 2 1 24 24 C 1.54887 * 104.19467 * 217.10112 * 23 22 2 25 25 C 1.54888 * 102.74724 * 37.94348 * 24 23 22 26 26 C 1.53867 * 110.03390 * 179.97438 * 22 2 1 27 27 H 1.09007 * 109.46594 * 301.55601 * 1 2 3 28 28 H 1.08999 * 109.47514 * 61.55227 * 1 2 3 29 29 H 1.08997 * 109.47116 * 181.56391 * 1 2 3 30 30 H 1.09001 * 109.47130 * 92.08294 * 7 6 4 31 31 H 1.09004 * 109.47040 * 212.08400 * 7 6 4 32 32 H 1.09004 * 109.46988 * 332.08090 * 7 6 4 33 33 H 1.08997 * 110.71940 * 35.78926 * 10 8 6 34 34 H 1.09000 * 110.71865 * 158.88465 * 10 8 6 35 35 H 1.09001 * 109.88378 * 97.22558 * 11 10 8 36 36 H 1.09000 * 109.88328 * 218.39105 * 11 10 8 37 37 H 0.97003 * 119.99721 * 179.97438 * 16 15 13 38 38 H 1.08997 * 110.37556 * 265.30660 * 21 12 11 39 39 H 1.09000 * 110.40540 * 142.95237 * 21 12 11 40 40 H 1.09006 * 110.01427 * 58.60278 * 22 2 1 41 41 H 1.08997 * 110.48557 * 335.78237 * 23 22 2 42 42 H 1.09004 * 110.48468 * 98.42476 * 23 22 2 43 43 H 1.08994 * 110.75877 * 279.63117 * 24 23 22 44 44 H 1.09005 * 110.91397 * 156.32707 * 24 23 22 45 45 H 1.08996 * 110.48792 * 203.37319 * 25 24 23 46 46 H 1.09004 * 110.60073 * 80.79232 * 25 24 23 47 47 H 1.09001 * 110.03239 * 238.56810 * 26 22 2 48 48 H 1.09001 * 110.03636 * 359.97438 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6393 -1.7548 -1.1225 6 7 1.8068 -0.1851 -2.4511 7 6 2.2296 -0.9119 -3.6508 8 6 1.1390 1.1127 -2.5781 9 1 0.8494 1.4980 -1.6005 10 6 -0.0873 1.0170 -3.5238 11 6 0.5465 1.1409 -4.9253 12 7 1.8456 1.8090 -4.7595 13 6 2.7325 2.0904 -5.7642 14 1 3.6646 2.5870 -5.5383 15 6 2.4334 1.7375 -7.0729 16 7 1.2977 1.1319 -7.3480 17 14 3.6428 2.1220 -8.4436 18 1 4.8347 2.8019 -7.8758 19 1 4.0605 0.8591 -9.1040 20 1 2.9946 3.0111 -9.4408 21 6 2.0354 2.1270 -3.3314 22 6 2.0401 -0.7213 1.2491 23 6 1.5925 0.0360 2.5164 24 6 2.7937 -0.1004 3.4846 25 6 4.0124 0.0240 2.5368 26 6 3.5787 -0.7294 1.2618 27 1 -0.3633 0.5379 0.8758 28 1 -0.3634 0.4895 -0.9035 29 1 -0.3633 -1.0273 0.0280 30 1 1.4097 -1.5370 -4.0047 31 1 2.5055 -0.1998 -4.4287 32 1 3.0881 -1.5395 -3.4117 33 1 -0.5875 0.0552 -3.4105 34 1 -0.7824 1.8358 -3.3381 35 1 0.6916 0.1500 -5.3555 36 1 -0.0972 1.7374 -5.5719 37 1 1.0885 0.8856 -8.2627 38 1 1.7117 3.1469 -3.1234 39 1 3.0795 1.9942 -3.0479 40 1 1.6614 -1.7432 1.2706 41 1 1.4041 1.0849 2.2875 42 1 0.7034 -0.4278 2.9439 43 1 2.7848 -1.0729 3.9766 44 1 2.7934 0.7034 4.2208 45 1 4.8895 -0.4484 2.9791 46 1 4.2172 1.0705 2.3107 47 1 3.9465 -1.7550 1.2905 48 1 3.9621 -0.2198 0.3778 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033575188.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:46 Heat of formation + Delta-G solvation = -18.325655 kcal Electronic energy + Delta-G solvation = -25595.243829 eV Core-core repulsion = 22264.388913 eV Total energy + Delta-G solvation = -3330.854916 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34171 -38.33447 -37.19943 -34.21622 -33.22528 -31.92273 -29.30286 -28.79033 -28.17974 -27.50600 -26.11614 -24.56014 -23.17834 -20.97332 -20.66439 -20.15010 -19.87585 -18.16910 -17.06958 -16.94444 -15.91568 -15.46637 -14.94040 -14.85116 -14.68739 -14.19939 -13.91201 -13.43399 -13.36242 -13.21705 -12.76114 -12.43387 -12.30522 -12.01070 -11.80476 -11.59572 -11.57973 -11.40584 -11.12817 -11.04621 -11.01671 -10.94569 -10.90346 -10.83948 -10.71088 -10.57316 -10.30642 -10.16650 -10.07697 -9.93759 -9.72185 -9.22604 -8.71751 -8.12398 -6.85935 -5.77841 -3.12069 2.99593 3.36738 3.43268 3.45056 3.46177 4.44663 4.47158 4.56832 4.62633 4.87274 5.04763 5.15656 5.19299 5.28193 5.37353 5.41827 5.44401 5.56449 5.58455 5.61483 5.61912 5.68710 5.72997 5.77580 5.77934 5.88694 5.98150 6.07184 6.11789 6.17143 6.21032 6.25700 6.31168 6.31936 6.40980 6.45503 6.48197 6.53277 6.56845 6.86514 7.06333 7.50536 7.54419 7.76929 7.94066 8.17824 8.59310 9.15226 9.74672 10.39136 11.33209 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.003892 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.533845 B = 7192.661610 C = 7501.563478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 H 0.093 0.907 4 C 0.512 3.488 5 O -0.550 6.550 6 N -0.587 5.587 7 C 0.071 3.929 8 C 0.112 3.888 9 H 0.097 0.903 10 C -0.157 4.157 11 C 0.174 3.826 12 N -0.601 5.601 13 C -0.232 4.232 14 H 0.078 0.922 15 C -0.005 4.005 16 N -0.919 5.919 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.122 3.878 22 C -0.069 4.069 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.109 4.109 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.252 0.748 38 H 0.030 0.970 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -0.794 18.213 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 H 0.111 0.889 4 C 0.300 3.700 5 O -0.429 6.429 6 N -0.318 5.318 7 C -0.071 4.071 8 C 0.007 3.993 9 H 0.114 0.886 10 C -0.196 4.196 11 C 0.049 3.951 12 N -0.328 5.328 13 C -0.360 4.360 14 H 0.096 0.904 15 C -0.201 4.201 16 N -0.566 5.566 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C -0.005 4.005 22 C -0.088 4.088 23 C -0.156 4.156 24 C -0.162 4.162 25 C -0.166 4.166 26 C -0.147 4.147 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.135 0.865 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.736 -1.378 17.989 18.125 hybrid contribution 0.489 0.268 -0.984 1.131 sum -1.247 -1.110 17.005 17.087 Atomic orbital electron populations 1.21971 0.93124 1.02813 1.02983 1.21452 0.97366 1.00564 0.93186 0.88927 1.20580 0.79470 0.85417 0.84555 1.90642 1.41684 1.24057 1.86478 1.47726 1.57802 1.20194 1.06084 1.22052 0.99020 0.98155 0.87902 1.22538 0.93913 0.83760 0.99068 0.88558 1.23259 0.96458 1.01049 0.98839 1.21244 0.85950 0.98091 0.89777 1.44571 1.18560 1.68780 1.00922 1.19074 0.97978 1.32979 0.85924 0.90398 1.24783 0.97450 1.00691 0.97211 1.69965 1.22765 1.45374 1.18517 0.86068 0.80088 0.77526 0.82207 1.20530 1.21709 1.21777 1.21965 0.97304 0.94806 0.86393 1.21555 0.95759 0.99313 0.92174 1.22456 0.97761 1.00402 0.95030 1.22477 0.95039 1.01329 0.97351 1.22430 0.97625 1.00444 0.96081 1.22100 0.94708 1.00731 0.97122 0.91560 0.91129 0.92251 0.93852 0.86462 0.92198 0.91743 0.91329 0.92946 0.93919 0.93733 0.95227 0.93791 0.90554 0.91421 0.91771 0.91724 0.91888 0.92088 0.91877 0.91632 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.53 37.16 0.32 -1.30 16 2 C -0.10 -1.30 1.17 -91.77 -0.11 -1.41 16 3 H 0.09 1.08 7.36 -51.93 -0.38 0.70 16 4 C 0.51 8.50 6.26 -10.98 -0.07 8.44 16 5 O -0.55 -10.75 14.45 5.56 0.08 -10.67 16 6 N -0.59 -10.24 2.91 -171.47 -0.50 -10.74 16 7 C 0.07 1.40 8.68 59.85 0.52 1.92 16 8 C 0.11 1.81 2.57 -65.78 -0.17 1.64 16 9 H 0.10 1.27 4.53 -51.93 -0.24 1.03 16 10 C -0.16 -2.69 5.99 -24.90 -0.15 -2.84 16 11 C 0.17 3.92 4.28 -3.07 -0.01 3.91 16 12 N -0.60 -14.22 1.94 -169.99 -0.33 -14.55 16 13 C -0.23 -6.12 9.95 -15.06 -0.15 -6.27 16 14 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 15 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 16 N -0.92 -25.81 10.31 55.49 0.57 -25.24 16 17 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C 0.12 2.35 6.59 -2.47 -0.02 2.34 16 22 C -0.07 -0.81 2.10 -89.51 -0.19 -1.00 16 23 C -0.12 -1.08 5.35 -25.07 -0.13 -1.22 16 24 C -0.12 -1.09 6.91 -24.74 -0.17 -1.26 16 25 C -0.13 -1.28 6.83 -25.05 -0.17 -1.45 16 26 C -0.11 -1.36 5.18 -25.59 -0.13 -1.50 16 27 H 0.07 0.56 7.32 -51.93 -0.38 0.18 16 28 H 0.07 0.78 5.28 -51.93 -0.27 0.51 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 31 H 0.12 2.67 4.74 -51.93 -0.25 2.43 16 32 H 0.06 1.19 7.32 -51.93 -0.38 0.81 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 1.31 6.11 -51.93 -0.32 0.99 16 36 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 37 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 41 H 0.07 0.58 7.75 -51.93 -0.40 0.18 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.06 0.89 7.00 -51.93 -0.36 0.52 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -29.31 353.06 -9.01 -38.32 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.40 Total: 1.22 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.73 Total: -0.21 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.26 Total: -50.54 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.31 -9.01 -38.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033575188.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.992 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds