Wall clock time and date at job start Fri Apr 10 2020 20:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47220 * 2 1 4 4 C 1.50702 * 109.47322 * 239.99962 * 2 1 3 5 5 O 1.21282 * 119.99586 * 239.99777 * 4 2 1 6 6 N 1.34777 * 120.00022 * 59.99621 * 4 2 1 7 7 C 1.46498 * 120.00005 * 0.02562 * 6 4 2 8 8 C 1.46501 * 119.99956 * 180.02562 * 6 4 2 9 9 H 1.09005 * 110.63769 * 1.68521 * 8 6 4 10 10 C 1.55148 * 110.72103 * 125.02272 * 8 6 4 11 11 C 1.55133 * 101.48378 * 82.69606 * 10 8 6 12 12 N 1.47426 * 104.72214 * 37.29794 * 11 10 8 13 13 C 1.36939 * 125.64656 * 155.82094 * 12 11 10 14 14 H 1.08005 * 119.99322 * 199.22831 * 13 12 11 15 15 C 1.38809 * 120.00354 * 19.22776 * 13 12 11 16 16 N 1.31616 * 119.99843 * 28.47482 * 15 13 12 17 17 Si 1.86793 * 119.99954 * 208.47891 * 15 13 12 18 18 H 1.48505 * 109.47062 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47375 * 299.99653 * 17 15 13 20 20 H 1.48501 * 109.47132 * 59.99984 * 17 15 13 21 21 C 1.47022 * 108.69976 * 335.54833 * 12 11 10 22 22 C 1.52996 * 109.47258 * 119.99758 * 2 1 3 23 23 C 1.54267 * 110.03244 * 297.16953 * 22 2 1 24 24 C 1.54892 * 104.19797 * 217.10415 * 23 22 2 25 25 C 1.54894 * 102.74578 * 37.94154 * 24 23 22 26 26 C 1.53881 * 110.03416 * 180.02562 * 22 2 1 27 27 H 1.09000 * 109.47784 * 60.00410 * 1 2 3 28 28 H 1.09008 * 109.47266 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47492 * 300.00193 * 1 2 3 30 30 H 1.08997 * 109.47118 * 269.99928 * 7 6 4 31 31 H 1.08999 * 109.47322 * 29.99573 * 7 6 4 32 32 H 1.09001 * 109.47040 * 149.99897 * 7 6 4 33 33 H 1.09003 * 111.00636 * 200.93085 * 10 8 6 34 34 H 1.08995 * 111.00855 * 324.79017 * 10 8 6 35 35 H 1.09003 * 110.49732 * 278.44913 * 11 10 8 36 36 H 1.09002 * 110.34263 * 156.06155 * 11 10 8 37 37 H 0.97001 * 120.00427 * 5.67258 * 16 15 13 38 38 H 1.09002 * 109.87831 * 120.70897 * 21 12 11 39 39 H 1.08997 * 109.88402 * 241.71642 * 21 12 11 40 40 H 1.09003 * 110.01592 * 58.60938 * 22 2 1 41 41 H 1.09000 * 110.48861 * 335.78289 * 23 22 2 42 42 H 1.09003 * 110.48748 * 98.42692 * 23 22 2 43 43 H 1.08997 * 110.75987 * 279.62798 * 24 23 22 44 44 H 1.09000 * 110.75934 * 156.25084 * 24 23 22 45 45 H 1.09002 * 110.48275 * 203.37789 * 25 24 23 46 46 H 1.09001 * 110.48979 * 80.73773 * 25 24 23 47 47 H 1.08996 * 110.03307 * 238.56622 * 26 22 2 48 48 H 1.09000 * 110.02960 * 0.02562 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4546 7 6 0.8648 0.9414 -2.5890 8 6 2.1946 -0.9410 -3.6507 9 1 2.7786 -1.8193 -3.3757 10 6 1.0145 -1.3304 -4.5795 11 6 0.7799 -0.0060 -5.3526 12 7 2.1297 0.5466 -5.5673 13 6 2.4869 1.4164 -6.5628 14 1 3.5259 1.5265 -6.8364 15 6 1.5138 2.1565 -7.2201 16 7 0.3995 2.4783 -6.5979 17 14 1.7856 2.6957 -8.9878 18 1 0.6064 3.4667 -9.4570 19 1 2.9982 3.5496 -9.0640 20 1 1.9681 1.4989 -9.8478 21 6 3.0272 0.0143 -4.5316 22 6 2.0399 -0.7212 1.2492 23 6 1.5922 0.0361 2.5164 24 6 2.7934 -0.1000 3.4848 25 6 4.0122 0.0244 2.5370 26 6 3.5787 -0.7282 1.2626 27 1 -0.3635 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.1832 0.6438 -2.6222 31 1 1.0286 1.6001 -1.7362 32 1 1.1227 1.4665 -3.5087 33 1 1.2991 -2.1364 -5.2560 34 1 0.1334 -1.6028 -3.9985 35 1 0.1784 0.6816 -4.7581 36 1 0.2954 -0.2059 -6.3084 37 1 0.2922 2.2704 -5.6565 38 1 3.8479 -0.5314 -4.9971 39 1 3.4211 0.8311 -3.9269 40 1 1.6614 -1.7431 1.2708 41 1 1.4038 1.0850 2.2875 42 1 0.7031 -0.4276 2.9439 43 1 2.7845 -1.0725 3.9770 44 1 2.7911 0.7057 4.2188 45 1 4.8892 -0.4480 2.9795 46 1 4.2147 1.0714 2.3113 47 1 3.9472 -1.7535 1.2914 48 1 3.9620 -0.2173 0.3793 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033575189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:49 Heat of formation + Delta-G solvation = -21.407878 kcal Electronic energy + Delta-G solvation = -25391.282973 eV Core-core repulsion = 22060.294403 eV Total energy + Delta-G solvation = -3330.988571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47243 -38.51165 -37.18960 -34.73066 -33.42641 -31.95961 -29.16778 -28.82797 -28.35106 -27.42682 -26.34720 -24.48999 -23.53876 -21.03131 -20.70072 -20.25483 -19.52037 -18.56284 -17.57293 -17.04267 -16.21333 -15.52517 -15.23471 -15.07414 -14.45862 -14.10690 -13.84366 -13.69349 -13.42245 -13.31310 -13.09117 -12.79193 -12.43377 -12.25619 -11.94858 -11.83237 -11.67614 -11.51172 -11.19281 -11.14978 -11.08406 -10.94745 -10.78088 -10.75835 -10.67401 -10.60714 -10.41602 -10.32252 -10.24462 -10.02228 -9.56878 -9.29246 -8.42199 -8.30154 -6.95577 -6.14629 -3.19633 2.84649 3.24376 3.48344 3.52709 3.69964 4.39734 4.50821 4.56478 4.57303 4.79115 4.99580 5.07676 5.18326 5.22165 5.29321 5.35133 5.39045 5.46533 5.50940 5.54654 5.58287 5.60770 5.64201 5.68560 5.71786 5.75374 5.78881 5.85177 5.92752 6.01864 6.04311 6.07728 6.12839 6.21108 6.22864 6.35554 6.36906 6.40814 6.48343 6.62336 6.89845 6.96529 7.01958 7.69515 7.79522 8.41595 8.46206 8.97836 9.77227 10.33750 11.17799 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.003530 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.779625 B = 7929.971664 C = 7987.621239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.102 4.102 3 H 0.094 0.906 4 C 0.516 3.484 5 O -0.547 6.547 6 N -0.595 5.595 7 C 0.068 3.932 8 C 0.126 3.874 9 H 0.102 0.898 10 C -0.145 4.145 11 C 0.136 3.864 12 N -0.600 5.600 13 C -0.337 4.337 14 H 0.063 0.937 15 C -0.023 4.023 16 N -0.913 5.913 17 Si 1.064 2.936 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.294 1.294 21 C 0.126 3.874 22 C -0.069 4.069 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.107 4.107 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.048 0.952 37 H 0.266 0.734 38 H 0.034 0.966 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 -4.550 17.303 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.123 4.123 3 H 0.112 0.888 4 C 0.304 3.696 5 O -0.425 6.425 6 N -0.327 5.327 7 C -0.075 4.075 8 C 0.023 3.977 9 H 0.120 0.880 10 C -0.184 4.184 11 C 0.011 3.989 12 N -0.328 5.328 13 C -0.465 4.465 14 H 0.080 0.920 15 C -0.225 4.225 16 N -0.554 5.554 17 Si 0.893 3.107 18 H -0.211 1.211 19 H -0.220 1.220 20 H -0.221 1.221 21 C 0.000 4.000 22 C -0.088 4.088 23 C -0.157 4.157 24 C -0.162 4.162 25 C -0.167 4.167 26 C -0.145 4.145 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.251 -4.226 15.961 16.512 hybrid contribution 0.737 -0.628 1.174 1.522 sum 0.486 -4.854 17.134 17.815 Atomic orbital electron populations 1.22066 0.93152 1.02860 1.03411 1.21430 0.97464 1.00530 0.92926 0.88774 1.20644 0.79957 0.84546 0.84432 1.90646 1.38527 1.26801 1.86503 1.47799 1.50653 1.28801 1.05407 1.22216 0.93996 0.87066 1.04202 1.22089 0.95913 0.95680 0.84062 0.88035 1.23177 0.97496 0.99592 0.98183 1.21796 0.88743 0.90587 0.97815 1.44573 1.05106 1.52213 1.30906 1.19712 0.95313 1.19484 1.11963 0.91956 1.25738 0.95163 0.95905 1.05684 1.70819 1.29589 1.42887 1.12104 0.83539 0.75388 0.75950 0.75800 1.21095 1.22022 1.22133 1.21671 0.93397 0.94913 0.90050 1.21562 0.95867 0.99223 0.92144 1.22460 0.97816 1.00390 0.95010 1.22486 0.94996 1.01353 0.97375 1.22430 0.97665 1.00436 0.96134 1.22081 0.94571 1.00779 0.97071 0.90778 0.92337 0.91566 0.92499 0.91756 0.88401 0.90671 0.91661 0.94689 0.93368 0.92257 0.94859 0.95432 0.90623 0.91444 0.91738 0.91667 0.91864 0.92022 0.91933 0.91580 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.63 37.15 0.32 -1.30 16 2 C -0.10 -1.23 1.22 -91.78 -0.11 -1.34 16 3 H 0.09 1.08 7.38 -51.93 -0.38 0.69 16 4 C 0.52 8.11 6.46 -10.98 -0.07 8.04 16 5 O -0.55 -10.04 14.04 5.56 0.08 -9.96 16 6 N -0.59 -9.77 2.83 -171.84 -0.49 -10.26 16 7 C 0.07 1.05 6.89 59.85 0.41 1.46 16 8 C 0.13 2.31 3.58 -66.10 -0.24 2.07 16 9 H 0.10 1.88 6.99 -51.93 -0.36 1.51 16 10 C -0.15 -2.64 6.54 -24.47 -0.16 -2.80 16 11 C 0.14 3.02 4.50 -2.41 -0.01 3.01 16 12 N -0.60 -14.82 2.84 -169.93 -0.48 -15.30 16 13 C -0.34 -9.36 10.00 -15.06 -0.15 -9.51 16 14 H 0.06 1.75 7.97 -52.48 -0.42 1.33 16 15 C -0.02 -0.64 5.09 -17.43 -0.09 -0.73 16 16 N -0.91 -26.52 13.01 55.49 0.72 -25.80 16 17 Si 1.06 25.02 30.00 -169.99 -5.10 19.92 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.13 2.69 6.24 -3.07 -0.02 2.67 16 22 C -0.07 -0.78 2.12 -89.50 -0.19 -0.97 16 23 C -0.12 -1.06 5.32 -25.07 -0.13 -1.20 16 24 C -0.12 -1.07 6.91 -24.73 -0.17 -1.24 16 25 C -0.13 -1.26 6.83 -25.10 -0.17 -1.43 16 26 C -0.11 -1.30 5.07 -25.64 -0.13 -1.43 16 27 H 0.07 0.78 4.53 -51.93 -0.24 0.55 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 29 H 0.07 0.56 7.27 -51.93 -0.38 0.18 16 30 H 0.06 0.81 6.79 -51.93 -0.35 0.45 16 31 H 0.06 0.83 6.01 -51.93 -0.31 0.52 16 32 H 0.10 1.90 5.18 -51.93 -0.27 1.63 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.04 0.79 4.17 -51.93 -0.22 0.58 16 36 H 0.05 1.19 8.07 -51.93 -0.42 0.77 16 37 H 0.27 7.60 6.18 -40.82 -0.25 7.34 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.08 0.94 8.13 -51.93 -0.42 0.51 16 41 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.06 0.87 6.91 -51.93 -0.36 0.51 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -30.60 352.26 -9.10 -39.70 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.22 Total: 1.08 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.91 Total: -4.69 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.25 Total: -51.35 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.10 Total: 19.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.60 -9.10 -39.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033575189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.291 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds