Wall clock time and date at job start Fri Apr 10 2020 20:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47602 * 2 1 4 4 C 1.50704 * 109.46985 * 120.00345 * 2 1 3 5 5 O 1.21283 * 120.00005 * 119.99965 * 4 2 1 6 6 N 1.34777 * 119.99819 * 299.99689 * 4 2 1 7 7 C 1.46503 * 120.00069 * 0.02562 * 6 4 2 8 8 C 1.46503 * 120.00094 * 180.02562 * 6 4 2 9 9 H 1.09003 * 110.63703 * 1.68198 * 8 6 4 10 10 C 1.55154 * 110.72030 * 125.02213 * 8 6 4 11 11 C 1.54909 * 101.57797 * 153.86541 * 10 8 6 12 12 N 1.47427 * 104.83618 * 322.99131 * 11 10 8 13 13 C 1.36932 * 125.65101 * 204.16490 * 12 11 10 14 14 H 1.07995 * 119.99964 * 179.97438 * 13 12 11 15 15 C 1.38811 * 119.99905 * 359.95864 * 13 12 11 16 16 N 1.31618 * 120.00054 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46953 * 89.99706 * 17 15 13 19 19 H 1.48501 * 109.46920 * 209.99862 * 17 15 13 20 20 H 1.48504 * 109.47157 * 329.99742 * 17 15 13 21 21 C 1.47027 * 108.69941 * 24.13037 * 12 11 10 22 22 C 1.53004 * 109.47125 * 239.99774 * 2 1 3 23 23 C 1.54894 * 110.48128 * 63.24566 * 22 2 1 24 24 C 1.55238 * 102.58338 * 156.67574 * 23 22 2 25 25 C 1.54266 * 104.23333 * 322.08174 * 24 23 22 26 26 C 1.53869 * 106.59800 * 23.61579 * 25 24 23 27 27 H 1.08998 * 109.47501 * 300.00119 * 1 2 3 28 28 H 1.09005 * 109.47244 * 60.00006 * 1 2 3 29 29 H 1.09006 * 109.47602 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46575 * 89.99839 * 7 6 4 31 31 H 1.08990 * 109.47245 * 209.99958 * 7 6 4 32 32 H 1.08997 * 109.47016 * 330.00276 * 7 6 4 33 33 H 1.08997 * 111.00430 * 271.93471 * 10 8 6 34 34 H 1.08996 * 111.00318 * 35.79200 * 10 8 6 35 35 H 1.08999 * 110.36713 * 204.14973 * 11 10 8 36 36 H 1.09003 * 110.45878 * 81.87965 * 11 10 8 37 37 H 0.97002 * 119.99982 * 180.02562 * 16 15 13 38 38 H 1.09009 * 109.87953 * 239.52791 * 21 12 11 39 39 H 1.08993 * 110.00992 * 118.43348 * 21 12 11 40 40 H 1.09002 * 110.43542 * 300.70414 * 22 2 1 41 41 H 1.08996 * 110.75388 * 275.05927 * 23 22 2 42 42 H 1.08993 * 110.76071 * 38.44153 * 23 22 2 43 43 H 1.09005 * 110.46917 * 203.39204 * 24 23 22 44 44 H 1.09007 * 110.58541 * 80.83124 * 24 23 22 45 45 H 1.08999 * 110.03060 * 264.32313 * 25 24 23 46 46 H 1.09003 * 110.02805 * 142.89578 * 25 24 23 47 47 H 1.09001 * 110.02983 * 240.71432 * 26 25 24 48 48 H 1.08996 * 110.07773 * 119.30576 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 0.8640 0.9408 2.5890 8 6 2.1954 -0.9404 3.6508 9 1 2.8288 -1.7838 3.3758 10 6 2.9559 0.0426 4.5796 11 6 2.7703 -0.6300 5.9627 12 7 1.4049 -1.1851 5.9323 13 6 0.6263 -1.4495 7.0273 14 1 -0.3654 -1.8572 6.8990 15 6 1.1120 -1.1939 8.3023 16 7 2.3210 -0.6977 8.4588 17 14 0.0497 -1.5539 9.7961 18 1 0.2925 -2.9461 10.2521 19 1 0.3940 -0.6081 10.8879 20 1 -1.3820 -1.3937 9.4355 21 6 1.0173 -1.4069 4.5315 22 6 2.0400 -0.7213 -1.2492 23 6 1.6048 0.0364 -2.5282 24 6 2.6558 -0.4294 -3.5714 25 6 3.9733 -0.5093 -2.7728 26 6 3.5817 -0.6950 -1.2964 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.1838 0.6424 2.6225 31 1 1.1217 1.4663 3.5084 32 1 1.0271 1.5995 1.7360 33 1 4.0107 0.0976 4.3104 34 1 2.4974 1.0313 4.5613 35 1 2.8620 0.1085 6.7590 36 1 3.5010 -1.4272 6.0998 37 1 2.6606 -0.5194 9.3498 38 1 0.1259 -0.8249 4.2970 39 1 0.8237 -2.4660 4.3614 40 1 1.6751 -1.7482 -1.2714 41 1 0.6001 -0.2599 -2.8297 42 1 1.6619 1.1142 -2.3770 43 1 2.7419 0.2994 -4.3773 44 1 2.3917 -1.4087 -3.9706 45 1 4.5408 0.4131 -2.8955 46 1 4.5644 -1.3599 -3.1120 47 1 3.9592 0.1374 -0.7025 48 1 3.9829 -1.6352 -0.9182 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033575190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:51 Heat of formation + Delta-G solvation = -19.313550 kcal Electronic energy + Delta-G solvation = -24911.387515 eV Core-core repulsion = 21580.489761 eV Total energy + Delta-G solvation = -3330.897754 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.37435 -38.29612 -37.03070 -34.93991 -33.44126 -31.90169 -29.23776 -28.82677 -27.99765 -27.23736 -26.67669 -24.70431 -23.59142 -20.85588 -20.46850 -20.20891 -19.61551 -18.60037 -17.07319 -16.96098 -16.20733 -15.52469 -15.16215 -15.02764 -14.62652 -14.06915 -13.92485 -13.85059 -13.41665 -13.16940 -13.03014 -12.57409 -12.47098 -12.30972 -11.88386 -11.77960 -11.63922 -11.47113 -11.27140 -11.15481 -11.09592 -10.98914 -10.82030 -10.79817 -10.72510 -10.61790 -10.43172 -10.36217 -10.12090 -9.82105 -9.55487 -9.32867 -8.66581 -8.28222 -6.85314 -5.66451 -3.08673 2.84038 3.21211 3.39544 3.44500 3.46267 4.34369 4.46835 4.49331 4.55577 4.76180 4.96009 5.03979 5.12179 5.31173 5.35311 5.40327 5.43239 5.46781 5.49378 5.53247 5.56302 5.60610 5.61964 5.66745 5.70950 5.74027 5.80220 5.81659 5.88515 5.96500 6.01019 6.10585 6.14145 6.23858 6.34688 6.40014 6.41828 6.57189 6.60540 6.71866 7.02760 7.49091 7.60891 7.68089 7.83572 8.33279 8.42296 9.20368 9.81041 10.45544 11.37291 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.039306 B = 0.003124 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.182810 B = 8960.099594 C = 9260.291026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.101 4.101 3 H 0.093 0.907 4 C 0.515 3.485 5 O -0.542 6.542 6 N -0.601 5.601 7 C 0.074 3.926 8 C 0.126 3.874 9 H 0.102 0.898 10 C -0.153 4.153 11 C 0.153 3.847 12 N -0.602 5.602 13 C -0.222 4.222 14 H 0.077 0.923 15 C -0.011 4.011 16 N -0.922 5.922 17 Si 0.915 3.085 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.131 3.869 22 C -0.070 4.070 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.113 4.113 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.014 0.986 37 H 0.252 0.748 38 H 0.027 0.973 39 H 0.023 0.977 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 5.650 -21.317 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.123 4.123 3 H 0.111 0.889 4 C 0.303 3.697 5 O -0.419 6.419 6 N -0.333 5.333 7 C -0.069 4.069 8 C 0.023 3.977 9 H 0.120 0.880 10 C -0.192 4.192 11 C 0.028 3.972 12 N -0.329 5.329 13 C -0.350 4.350 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.571 5.571 17 Si 0.746 3.254 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.207 1.207 21 C 0.004 3.996 22 C -0.089 4.089 23 C -0.157 4.157 24 C -0.162 4.162 25 C -0.164 4.164 26 C -0.151 4.151 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.032 0.968 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.832 5.140 -21.130 21.762 hybrid contribution -0.554 -0.187 0.873 1.051 sum -1.386 4.953 -20.256 20.899 Atomic orbital electron populations 1.22061 0.93129 1.03064 1.03214 1.21382 0.97457 1.00377 0.93036 0.88857 1.20629 0.80079 0.84625 0.84364 1.90658 1.38269 1.26567 1.86385 1.47850 1.50797 1.28772 1.05864 1.21929 0.94605 0.87351 1.03006 1.22223 0.96297 0.95912 0.83302 0.87997 1.23385 0.98700 0.98620 0.98495 1.21929 0.85294 0.97187 0.92754 1.44438 1.14240 1.74815 0.99388 1.19067 0.96539 1.35602 0.83795 0.90500 1.24792 0.96865 1.01589 0.97403 1.69787 1.16175 1.50169 1.20968 0.86062 0.79293 0.77597 0.82474 1.21609 1.21637 1.20709 1.21501 0.94660 0.97453 0.86034 1.21785 0.95751 0.99376 0.91939 1.22638 0.98471 0.99877 0.94683 1.22398 0.95221 1.01009 0.97564 1.22172 0.97271 1.01285 0.95704 1.22139 0.94982 1.02690 0.95260 0.90890 0.91596 0.92179 0.92265 0.90298 0.91322 0.92141 0.91670 0.87334 0.96765 0.93691 0.95565 0.95897 0.90250 0.91575 0.91465 0.92003 0.91779 0.92232 0.92135 0.92461 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.64 37.15 0.32 -1.12 16 2 C -0.10 -1.10 1.31 -91.77 -0.12 -1.22 16 3 H 0.09 0.89 7.40 -51.93 -0.38 0.50 16 4 C 0.52 7.77 6.83 -10.98 -0.08 7.70 16 5 O -0.54 -10.01 13.89 5.55 0.08 -9.93 16 6 N -0.60 -9.23 2.88 -171.84 -0.50 -9.72 16 7 C 0.07 0.90 7.69 59.85 0.46 1.36 16 8 C 0.13 2.38 3.36 -66.10 -0.22 2.16 16 9 H 0.10 2.10 6.99 -51.93 -0.36 1.74 16 10 C -0.15 -2.95 6.61 -24.58 -0.16 -3.11 16 11 C 0.15 3.75 5.89 -2.53 -0.01 3.74 16 12 N -0.60 -15.55 3.39 -170.07 -0.58 -16.13 16 13 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 14 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 15 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 16 N -0.92 -26.82 10.09 55.49 0.56 -26.26 16 17 Si 0.92 22.04 29.55 -169.99 -5.02 17.02 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.13 2.82 6.88 -3.06 -0.02 2.80 16 22 C -0.07 -0.74 2.00 -88.96 -0.18 -0.92 16 23 C -0.12 -0.97 5.39 -24.55 -0.13 -1.11 16 24 C -0.12 -1.00 6.84 -24.88 -0.17 -1.17 16 25 C -0.13 -1.16 6.80 -25.62 -0.17 -1.34 16 26 C -0.11 -1.29 5.17 -25.62 -0.13 -1.43 16 27 H 0.07 0.65 4.53 -51.93 -0.24 0.41 16 28 H 0.07 0.48 7.26 -51.93 -0.38 0.10 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.68 6.70 -51.93 -0.35 0.33 16 31 H 0.08 1.04 6.07 -51.93 -0.32 0.73 16 32 H 0.07 0.63 6.01 -51.93 -0.31 0.32 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.19 6.09 -51.93 -0.32 0.87 16 35 H 0.11 2.94 5.87 -51.93 -0.31 2.64 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.03 0.55 6.94 -51.92 -0.36 0.19 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 41 H 0.07 0.49 7.99 -51.93 -0.41 0.07 16 42 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.68 7.83 -51.93 -0.41 0.27 16 48 H 0.07 1.02 7.41 -51.93 -0.38 0.64 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -31.12 354.87 -9.28 -40.40 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.29 Total: -0.30 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.87 Total: -0.42 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.51 Total: -52.11 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.12 -9.28 -40.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033575190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.082 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds