Wall clock time and date at job start Fri Apr 10 2020 20:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47376 * 2 1 4 4 C 1.50697 * 109.47284 * 120.00238 * 2 1 3 5 5 O 1.21275 * 120.00214 * 109.14122 * 4 2 1 6 6 N 1.34782 * 119.99707 * 289.14524 * 4 2 1 7 7 C 1.46497 * 119.99853 * 183.87177 * 6 4 2 8 8 C 1.46498 * 120.00195 * 3.86463 * 6 4 2 9 9 H 1.09004 * 110.64172 * 3.52953 * 8 6 4 10 10 C 1.55153 * 110.72342 * 240.18847 * 8 6 4 11 11 C 1.55130 * 101.48344 * 205.96973 * 10 8 6 12 12 N 1.47420 * 104.72503 * 37.29569 * 11 10 8 13 13 C 1.36938 * 125.64959 * 155.81315 * 12 11 10 14 14 H 1.08000 * 120.00092 * 190.61344 * 13 12 11 15 15 C 1.38805 * 119.99995 * 10.62170 * 13 12 11 16 16 N 1.31619 * 120.00398 * 32.31615 * 15 13 12 17 17 Si 1.86800 * 120.00054 * 212.31491 * 15 13 12 18 18 H 1.48499 * 109.47316 * 179.97438 * 17 15 13 19 19 H 1.48507 * 109.47217 * 300.00109 * 17 15 13 20 20 H 1.48502 * 109.47032 * 59.99807 * 17 15 13 21 21 C 1.47025 * 108.70257 * 335.55020 * 12 11 10 22 22 C 1.53005 * 109.47292 * 239.99996 * 2 1 3 23 23 C 1.54258 * 110.03463 * 177.90853 * 22 2 1 24 24 C 1.54961 * 104.16127 * 217.14003 * 23 22 2 25 25 C 1.54887 * 102.78169 * 37.88730 * 24 23 22 26 26 C 1.53879 * 110.02766 * 60.68885 * 22 2 1 27 27 H 1.09001 * 109.46857 * 64.16068 * 1 2 3 28 28 H 1.08998 * 109.47083 * 184.16156 * 1 2 3 29 29 H 1.08998 * 109.47053 * 304.16672 * 1 2 3 30 30 H 1.08998 * 109.47187 * 272.79749 * 7 6 4 31 31 H 1.09001 * 109.47439 * 32.79694 * 7 6 4 32 32 H 1.09008 * 109.47433 * 152.79886 * 7 6 4 33 33 H 1.08999 * 111.00356 * 324.20767 * 10 8 6 34 34 H 1.08999 * 111.00555 * 88.02273 * 10 8 6 35 35 H 1.08996 * 110.49857 * 278.45176 * 11 10 8 36 36 H 1.09003 * 110.34382 * 156.05881 * 11 10 8 37 37 H 0.97001 * 119.99646 * 0.26734 * 16 15 13 38 38 H 1.09001 * 109.87982 * 120.70055 * 21 12 11 39 39 H 1.08998 * 109.88419 * 241.87049 * 21 12 11 40 40 H 1.08997 * 110.01657 * 299.30453 * 22 2 1 41 41 H 1.09003 * 110.49042 * 335.78394 * 23 22 2 42 42 H 1.09001 * 110.48626 * 98.42607 * 23 22 2 43 43 H 1.09006 * 110.71533 * 279.57098 * 24 23 22 44 44 H 1.09008 * 110.76912 * 156.22420 * 24 23 22 45 45 H 1.08996 * 110.49041 * 203.41115 * 25 24 23 46 46 H 1.09001 * 110.59962 * 80.81882 * 25 24 23 47 47 H 1.09001 * 110.03413 * 238.56521 * 26 22 2 48 48 H 1.08992 * 110.03830 * 359.95564 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5592 -1.7981 1.1300 6 7 1.8961 -0.1370 2.4425 7 6 2.4594 -0.7875 3.6281 8 6 1.1847 1.1369 2.5744 9 1 0.7776 1.4510 1.6132 10 6 2.1174 2.2282 3.1629 11 6 1.0930 3.1828 3.8306 12 7 0.0587 2.2921 4.3876 13 6 -0.7750 2.5922 5.4317 14 1 -1.3809 1.8179 5.8787 15 6 -0.8416 3.8915 5.9154 16 7 -0.6711 4.9080 5.0969 17 14 -1.1732 4.1975 7.7280 18 1 -1.1945 5.6595 7.9875 19 1 -2.4860 3.6096 8.0973 20 1 -0.1022 3.5666 8.5406 21 6 0.0663 1.0307 3.6324 22 6 2.0401 -0.7213 -1.2493 23 6 3.5817 -0.6832 -1.2891 24 6 3.9178 -0.5060 -2.7914 25 6 2.8087 0.4587 -3.2793 26 6 1.5485 0.0041 -2.5142 27 1 -0.3633 0.4479 -0.9249 28 1 -0.3633 -1.0249 0.0746 29 1 -0.3633 0.5771 0.8503 30 1 1.7348 -1.4932 4.0342 31 1 3.3698 -1.3198 3.3524 32 1 2.6929 -0.0334 4.3799 33 1 2.7989 1.8036 3.9001 34 1 2.6683 2.7388 2.3731 35 1 0.6573 3.8535 3.0901 36 1 1.5704 3.7541 4.6267 37 1 -0.5027 4.7492 4.1549 38 1 0.2700 0.1973 4.3047 39 1 -0.8962 0.8868 3.1413 40 1 1.6919 -1.7541 -1.2521 41 1 3.9575 0.1618 -0.7121 42 1 3.9962 -1.6182 -0.9122 43 1 3.8578 -1.4601 -3.3151 44 1 4.9031 -0.0568 -2.9166 45 1 2.6599 0.3566 -4.3542 46 1 3.0579 1.4891 -3.0257 47 1 0.9626 -0.6771 -3.1313 48 1 0.9460 0.8694 -2.2382 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033575191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:54 Heat of formation + Delta-G solvation = -23.781355 kcal Electronic energy + Delta-G solvation = -25279.743681 eV Core-core repulsion = 21948.652188 eV Total energy + Delta-G solvation = -3331.091493 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.50636 -38.38532 -37.43954 -34.80330 -33.45933 -32.13161 -29.26653 -28.88672 -28.21493 -27.38851 -26.79996 -24.36556 -23.55504 -20.90431 -20.73894 -20.34233 -19.78914 -18.56141 -17.66944 -17.37497 -16.16254 -15.52202 -15.19954 -14.97110 -14.51383 -14.37471 -13.80302 -13.49902 -13.44570 -13.36343 -13.20496 -13.03817 -12.78754 -12.25001 -12.15028 -11.94174 -11.63104 -11.50793 -11.25530 -11.18254 -11.10927 -11.05315 -10.83284 -10.76030 -10.71997 -10.62841 -10.52197 -10.44412 -10.17956 -10.04242 -9.66559 -9.49916 -8.44208 -8.36389 -7.01914 -6.23270 -3.13893 2.74924 3.12904 3.47135 3.52067 3.69383 4.33932 4.48507 4.51711 4.56362 4.72300 4.96460 5.01470 5.07757 5.12592 5.26185 5.28420 5.33898 5.36199 5.49848 5.52371 5.52590 5.54025 5.56468 5.64848 5.70576 5.73511 5.78599 5.81367 5.86844 5.91882 5.95285 6.01397 6.04306 6.11927 6.19638 6.24484 6.24898 6.39726 6.47315 6.52994 6.69080 6.86881 6.91637 7.57562 7.71812 8.30715 8.43395 8.94475 9.77014 10.29806 11.15819 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.003628 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.170476 B = 7716.588823 C = 8109.586167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 H 0.093 0.907 4 C 0.520 3.480 5 O -0.546 6.546 6 N -0.601 5.601 7 C 0.087 3.913 8 C 0.114 3.886 9 H 0.105 0.895 10 C -0.147 4.147 11 C 0.145 3.855 12 N -0.601 5.601 13 C -0.346 4.346 14 H 0.068 0.932 15 C -0.023 4.023 16 N -0.912 5.912 17 Si 1.065 2.935 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.294 1.294 21 C 0.130 3.870 22 C -0.070 4.070 23 C -0.115 4.115 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.123 4.123 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.269 0.731 38 H 0.033 0.967 39 H 0.026 0.974 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.089 -8.677 -13.857 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.126 4.126 3 H 0.112 0.888 4 C 0.308 3.692 5 O -0.424 6.424 6 N -0.333 5.333 7 C -0.056 4.056 8 C 0.010 3.990 9 H 0.123 0.877 10 C -0.187 4.187 11 C 0.019 3.981 12 N -0.329 5.329 13 C -0.473 4.473 14 H 0.086 0.914 15 C -0.225 4.225 16 N -0.553 5.553 17 Si 0.895 3.105 18 H -0.211 1.211 19 H -0.220 1.220 20 H -0.221 1.221 21 C 0.003 3.997 22 C -0.089 4.089 23 C -0.152 4.152 24 C -0.164 4.164 25 C -0.163 4.163 26 C -0.160 4.160 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.088 -8.061 -12.646 16.587 hybrid contribution 0.022 -1.139 -1.009 1.522 sum 7.110 -9.200 -13.654 17.934 Atomic orbital electron populations 1.22044 0.92818 1.03044 1.03350 1.21459 0.97603 1.00557 0.92938 0.88843 1.20605 0.78564 0.85652 0.84398 1.90638 1.44579 1.20767 1.86403 1.47874 1.55244 1.22948 1.07190 1.21565 0.98621 0.97846 0.87561 1.22541 0.93347 0.82569 1.00566 0.87701 1.23269 0.98159 0.97179 1.00046 1.21570 0.88216 0.92129 0.96209 1.44524 1.38707 1.12454 1.37205 1.19691 1.23504 0.96314 1.07799 0.91410 1.25707 1.00183 0.90814 1.05791 1.70847 1.46660 1.32235 1.05581 0.83499 0.75955 0.75836 0.75250 1.21095 1.21992 1.22133 1.21535 0.94757 0.91253 0.92120 1.21562 0.95650 0.99588 0.92099 1.22399 0.94944 1.02175 0.95705 1.22527 0.98255 0.99281 0.96305 1.22363 0.95209 0.99323 0.99356 1.22287 0.97653 1.00193 0.95914 0.91070 0.92059 0.91054 0.92894 0.91227 0.90645 0.91006 0.91511 0.95513 0.92562 0.91953 0.94869 0.95659 0.90298 0.92158 0.90942 0.91697 0.91882 0.91981 0.91699 0.91791 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.60 37.16 0.32 -1.45 16 2 C -0.10 -1.26 1.15 -91.77 -0.11 -1.37 16 3 H 0.09 1.08 7.45 -51.93 -0.39 0.70 16 4 C 0.52 7.79 6.58 -10.98 -0.07 7.72 16 5 O -0.55 -9.48 14.60 5.56 0.08 -9.40 16 6 N -0.60 -9.13 2.89 -171.84 -0.50 -9.62 16 7 C 0.09 1.26 8.96 59.85 0.54 1.80 16 8 C 0.11 1.83 2.45 -66.10 -0.16 1.67 16 9 H 0.11 1.55 4.17 -51.93 -0.22 1.34 16 10 C -0.15 -2.48 6.63 -24.46 -0.16 -2.65 16 11 C 0.14 3.18 5.25 -2.41 -0.01 3.16 16 12 N -0.60 -14.66 3.34 -169.94 -0.57 -15.23 16 13 C -0.35 -9.57 10.01 -15.06 -0.15 -9.72 16 14 H 0.07 1.89 8.00 -52.49 -0.42 1.47 16 15 C -0.02 -0.64 4.99 -17.43 -0.09 -0.73 16 16 N -0.91 -26.85 12.95 55.49 0.72 -26.13 16 17 Si 1.06 24.96 30.02 -169.99 -5.10 19.86 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.13 2.61 6.85 -3.06 -0.02 2.59 16 22 C -0.07 -0.78 2.09 -89.50 -0.19 -0.97 16 23 C -0.11 -1.29 5.31 -25.04 -0.13 -1.42 16 24 C -0.13 -1.16 6.91 -24.70 -0.17 -1.33 16 25 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 26 C -0.12 -1.12 5.86 -25.61 -0.15 -1.28 16 27 H 0.07 0.68 6.41 -51.93 -0.33 0.35 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.90 5.47 -51.93 -0.28 0.62 16 30 H 0.05 0.77 7.97 -51.93 -0.41 0.35 16 31 H 0.07 0.98 7.57 -51.93 -0.39 0.59 16 32 H 0.07 1.10 6.44 -51.92 -0.33 0.76 16 33 H 0.07 1.20 6.44 -51.93 -0.33 0.87 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.62 6.93 -51.93 -0.36 0.26 16 36 H 0.06 1.37 7.71 -51.93 -0.40 0.97 16 37 H 0.27 7.85 5.92 -40.82 -0.24 7.60 16 38 H 0.03 0.68 6.77 -51.93 -0.35 0.33 16 39 H 0.03 0.52 8.04 -51.93 -0.42 0.11 16 40 H 0.08 0.98 7.97 -51.93 -0.41 0.56 16 41 H 0.06 0.71 7.84 -51.93 -0.41 0.30 16 42 H 0.07 0.92 7.65 -51.93 -0.40 0.53 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.61 6.39 -51.93 -0.33 0.28 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -30.91 355.73 -8.93 -39.84 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.19 Total: 0.54 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.73 Total: -5.22 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.34 Total: -50.98 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.10 Total: 19.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.91 -8.93 -39.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033575191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.057 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds