Wall clock time and date at job start Fri Apr 10 2020 20:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46993 * 2 1 4 4 C 1.50703 * 109.46976 * 240.00575 * 2 1 3 5 5 O 1.21284 * 119.99381 * 239.99632 * 4 2 1 6 6 N 1.34771 * 120.00041 * 60.00132 * 4 2 1 7 7 C 1.46503 * 119.99916 * 180.02562 * 6 4 2 8 8 H 1.08999 * 108.45685 * 327.28672 * 7 6 4 9 9 C 1.52526 * 108.52529 * 209.71886 * 7 6 4 10 10 C 1.50123 * 105.41817 * 149.34793 * 9 7 6 11 11 C 1.54842 * 110.81269 * 97.68259 * 10 9 7 12 12 C 1.54409 * 110.07177 * 321.07362 * 11 10 9 13 13 N 1.43427 * 116.38916 * 318.65324 * 12 11 10 14 14 C 1.36940 * 120.53716 * 271.72689 * 13 12 11 15 15 H 1.08000 * 119.99587 * 141.75816 * 14 13 12 16 16 C 1.38810 * 119.99946 * 322.03092 * 14 13 12 17 17 N 1.31616 * 119.99672 * 157.56613 * 16 14 13 18 18 Si 1.86801 * 119.99710 * 337.56523 * 16 14 13 19 19 H 1.48501 * 109.47267 * 95.29088 * 18 16 14 20 20 H 1.48506 * 109.46818 * 215.28519 * 18 16 14 21 21 H 1.48496 * 109.47455 * 335.28471 * 18 16 14 22 22 C 1.46233 * 108.52312 * 84.99461 * 7 6 4 23 23 C 1.52994 * 109.47127 * 120.00290 * 2 1 3 24 24 C 1.53780 * 113.61640 * 279.13506 * 23 2 1 25 25 C 1.53948 * 87.02029 * 220.04716 * 24 23 2 26 26 C 1.53774 * 87.11263 * 25.36327 * 25 24 23 27 27 H 1.08997 * 109.46854 * 299.99974 * 1 2 3 28 28 H 1.09009 * 109.46814 * 59.99459 * 1 2 3 29 29 H 1.08998 * 109.47189 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00172 * 359.97438 * 6 4 2 31 31 H 1.09003 * 110.24856 * 268.32592 * 9 7 6 32 32 H 1.09001 * 110.24992 * 30.23042 * 9 7 6 33 33 H 1.08997 * 109.20918 * 218.03084 * 10 9 7 34 34 H 1.09000 * 109.20547 * 337.34159 * 10 9 7 35 35 H 1.08997 * 109.35879 * 81.34209 * 11 10 9 36 36 H 1.09003 * 109.35771 * 201.06550 * 11 10 9 37 37 H 1.09001 * 107.88467 * 196.93410 * 12 11 10 38 38 H 1.08998 * 108.09692 * 80.54020 * 12 11 10 39 39 H 0.97008 * 119.99269 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.84517 * 60.14598 * 22 7 6 41 41 H 1.09001 * 109.90325 * 299.19183 * 22 7 6 42 42 H 1.09000 * 112.84740 * 50.33447 * 23 2 1 43 43 H 1.09002 * 113.61547 * 334.57189 * 24 23 2 44 44 H 1.09003 * 113.61203 * 105.47035 * 24 23 2 45 45 H 1.09003 * 113.53684 * 270.80764 * 25 24 23 46 46 H 1.09001 * 113.74101 * 139.94568 * 25 24 23 47 47 H 1.08999 * 113.61887 * 220.08586 * 26 25 24 48 48 H 1.08999 * 113.69341 * 89.19706 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2497 -2.4546 7 6 2.1946 -0.9406 -3.6508 8 1 3.1758 -1.3610 -3.4305 9 6 2.3497 0.0822 -4.7717 10 6 3.4808 -0.4233 -5.6195 11 6 2.9439 -1.1944 -6.8503 12 6 1.7153 -2.0402 -6.4511 13 7 1.7935 -2.7236 -5.1925 14 6 2.3344 -3.9792 -5.1149 15 1 2.9457 -4.2524 -4.2675 16 6 2.1017 -4.8990 -6.1282 17 7 2.9289 -5.9074 -6.3043 18 14 0.6144 -4.7054 -7.2418 19 1 1.0122 -3.9859 -8.4784 20 1 0.0849 -6.0464 -7.5979 21 1 -0.4362 -3.9303 -6.5343 22 6 1.2781 -2.0373 -3.9601 23 6 2.0400 -0.7213 1.2491 24 6 2.0344 0.1557 2.5123 25 6 3.3855 -0.4902 2.8693 26 6 3.5733 -0.7444 1.3644 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.1488 0.5387 -2.5435 31 1 1.4337 0.1392 -5.3597 32 1 2.5934 1.0609 -4.3583 33 1 4.0800 0.4216 -5.9590 34 1 4.1057 -1.0889 -5.0239 35 1 2.6587 -0.4836 -7.6258 36 1 3.7241 -1.8527 -7.2328 37 1 1.5526 -2.7834 -7.2317 38 1 0.8455 -1.3838 -6.4279 39 1 2.7660 -6.5503 -7.0122 40 1 0.2791 -1.6433 -4.1464 41 1 1.2488 -2.7420 -3.1291 42 1 1.5766 -1.6973 1.3931 43 1 2.1025 1.2233 2.3030 44 1 1.2342 -0.0896 3.2106 45 1 3.2898 -1.4027 3.4577 46 1 4.1094 0.2092 3.2876 47 1 4.0137 -1.7152 1.1371 48 1 4.0630 0.0757 0.8393 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034263736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:57 Heat of formation + Delta-G solvation = 1.087082 kcal Electronic energy + Delta-G solvation = -25227.557914 eV Core-core repulsion = 21897.544797 eV Total energy + Delta-G solvation = -3330.013116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.31176 -38.82664 -37.47909 -34.55325 -33.37223 -32.88629 -31.27948 -29.93734 -26.38020 -26.06789 -25.41706 -24.61009 -23.70687 -22.30533 -20.24561 -20.03093 -19.48458 -19.21938 -16.98670 -16.38107 -16.23551 -15.50976 -15.36438 -14.92548 -14.86220 -14.16423 -14.05687 -13.74378 -13.30347 -13.00424 -12.78831 -12.73747 -12.55720 -12.44705 -12.26684 -12.02233 -11.86783 -11.70513 -11.65147 -11.32407 -11.08947 -10.74142 -10.60551 -10.39644 -10.38174 -10.33774 -10.13727 -10.07918 -9.97363 -9.64055 -9.39675 -9.30934 -8.78181 -8.38386 -6.76486 -5.94317 -3.37128 2.96786 3.34364 3.42413 3.49200 3.54948 4.48194 4.55935 4.57238 4.58862 4.84269 4.93151 5.06884 5.08718 5.12021 5.25695 5.32081 5.37132 5.39283 5.55061 5.59352 5.63323 5.67350 5.72348 5.80545 5.86837 5.88950 5.93688 5.96703 6.00272 6.13757 6.19215 6.20990 6.26247 6.37870 6.48283 6.56251 6.62324 6.65948 6.77176 6.82442 6.85963 6.96707 7.03090 7.82567 8.13119 8.41669 8.58360 9.05904 9.76090 10.17668 11.21220 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021065 B = 0.004067 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.912661 B = 6882.268501 C = 7280.513204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.091 0.909 4 C 0.510 3.490 5 O -0.527 6.527 6 N -0.733 5.733 7 C 0.131 3.869 8 H 0.089 0.911 9 C -0.119 4.119 10 C -0.106 4.106 11 C -0.142 4.142 12 C 0.147 3.853 13 N -0.594 5.594 14 C -0.264 4.264 15 H 0.078 0.922 16 C 0.038 3.962 17 N -0.899 5.899 18 Si 0.880 3.120 19 H -0.286 1.286 20 H -0.303 1.303 21 H -0.272 1.272 22 C 0.132 3.868 23 C -0.087 4.087 24 C -0.136 4.136 25 C -0.146 4.146 26 C -0.124 4.124 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.391 0.609 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 17.413 12.184 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.109 0.891 4 C 0.295 3.705 5 O -0.402 6.402 6 N -0.385 5.385 7 C 0.026 3.974 8 H 0.107 0.893 9 C -0.157 4.157 10 C -0.144 4.144 11 C -0.183 4.183 12 C 0.019 3.981 13 N -0.317 5.317 14 C -0.393 4.393 15 H 0.096 0.904 16 C -0.162 4.162 17 N -0.540 5.540 18 Si 0.711 3.289 19 H -0.214 1.214 20 H -0.231 1.231 21 H -0.196 1.196 22 C 0.007 3.993 23 C -0.106 4.106 24 C -0.173 4.173 25 C -0.184 4.184 26 C -0.161 4.161 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.522 16.475 12.182 20.790 hybrid contribution -1.042 0.424 -0.899 1.440 sum -4.564 16.899 11.284 20.826 Atomic orbital electron populations 1.21739 0.93150 1.02876 1.02187 1.21368 0.97284 1.00212 0.93449 0.89071 1.20582 0.80438 0.84893 0.84548 1.90746 1.37195 1.25699 1.86549 1.46487 1.53868 1.31885 1.06228 1.20874 1.00951 0.92873 0.82689 0.89274 1.21305 1.00372 0.97090 0.96902 1.21291 0.97022 0.98661 0.97431 1.22738 1.00959 0.98301 0.96266 1.20596 0.94151 0.94135 0.89197 1.44040 1.70856 1.14777 1.02019 1.18777 1.24715 0.86778 1.09006 0.90421 1.25454 0.97246 0.95321 0.98206 1.69883 1.35228 1.16135 1.32742 0.86869 0.85830 0.75784 0.80415 1.21438 1.23075 1.19649 1.20708 0.93844 0.93634 0.91090 1.22324 0.97046 0.99022 0.92220 1.23005 0.97763 0.99154 0.97404 1.22879 0.97357 1.00726 0.97408 1.22788 0.95841 1.02651 0.94861 0.91715 0.92273 0.91936 0.77549 0.91156 0.92082 0.93623 0.91303 0.93248 0.92060 0.94135 0.95362 0.92756 0.95225 0.91029 0.88870 0.90343 0.91680 0.90374 0.91811 0.90727 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.07 37.16 0.34 -0.90 16 2 C -0.10 -1.06 2.46 -91.77 -0.23 -1.29 16 3 H 0.09 0.80 7.98 -51.93 -0.41 0.38 16 4 C 0.51 7.49 6.88 -10.99 -0.08 7.41 16 5 O -0.53 -10.25 14.49 5.55 0.08 -10.17 16 6 N -0.73 -9.89 4.77 -57.21 -0.27 -10.16 16 7 C 0.13 2.23 2.01 -71.39 -0.14 2.09 16 8 H 0.09 1.86 6.22 -51.93 -0.32 1.53 16 9 C -0.12 -1.75 5.25 -28.40 -0.15 -1.90 16 10 C -0.11 -1.77 5.65 -27.19 -0.15 -1.92 16 11 C -0.14 -2.66 6.40 -25.02 -0.16 -2.82 16 12 C 0.15 3.19 4.16 -4.93 -0.02 3.17 16 13 N -0.59 -14.24 2.19 -175.40 -0.38 -14.62 16 14 C -0.26 -7.58 9.95 -15.06 -0.15 -7.73 16 15 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 16 C 0.04 1.12 5.31 -17.43 -0.09 1.03 16 17 N -0.90 -27.96 13.97 55.49 0.78 -27.18 16 18 Si 0.88 22.68 25.10 -169.99 -4.27 18.41 16 19 H -0.29 -7.14 6.73 56.52 0.38 -6.76 16 20 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 21 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.13 2.69 5.54 -5.20 -0.03 2.66 16 23 C -0.09 -0.96 2.68 -89.81 -0.24 -1.20 16 24 C -0.14 -1.16 7.63 -25.83 -0.20 -1.35 16 25 C -0.15 -1.37 8.09 -25.83 -0.21 -1.58 16 26 C -0.12 -1.47 6.29 -25.92 -0.16 -1.63 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.45 7.56 -51.92 -0.39 0.06 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.39 3.95 8.03 -40.82 -0.33 3.63 16 31 H 0.07 1.02 6.28 -51.93 -0.33 0.69 16 32 H 0.06 0.75 8.03 -51.93 -0.42 0.33 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.33 6.82 -51.93 -0.35 0.98 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.04 0.98 3.06 -51.93 -0.16 0.82 16 38 H 0.03 0.55 6.89 -51.93 -0.36 0.19 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.03 0.56 8.13 -51.93 -0.42 0.13 16 41 H 0.07 1.62 7.93 -51.93 -0.41 1.21 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 0.59 7.99 -51.93 -0.41 0.18 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.07 1.05 8.00 -51.93 -0.42 0.64 16 48 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -32.60 359.48 -8.86 -41.46 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.54 Total: 2.80 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -1.67 Total: -5.96 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.12 Total: -51.97 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.27 Total: 18.41 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.60 -8.86 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034263736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.552 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds