Wall clock time and date at job start Fri Apr 10 2020 20:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47313 * 2 1 4 4 C 1.50708 * 109.47094 * 120.00390 * 2 1 3 5 5 O 1.21277 * 120.00100 * 119.99985 * 4 2 1 6 6 N 1.34777 * 119.99732 * 299.99654 * 4 2 1 7 7 C 1.46497 * 120.00431 * 179.97438 * 6 4 2 8 8 H 1.09007 * 109.32119 * 34.65571 * 7 6 4 9 9 C 1.47088 * 109.19015 * 154.21952 * 7 6 4 10 10 C 1.52566 * 114.32552 * 182.98017 * 9 7 6 11 11 C 1.50888 * 109.35792 * 274.98893 * 10 9 7 12 12 C 1.54289 * 110.23417 * 91.79663 * 11 10 9 13 13 N 1.47602 * 111.94589 * 319.70032 * 12 11 10 14 14 C 1.36939 * 118.64195 * 137.77837 * 13 12 11 15 15 H 1.08001 * 120.00105 * 207.65200 * 14 13 12 16 16 C 1.38808 * 120.00090 * 27.65265 * 14 13 12 17 17 N 1.31621 * 120.00093 * 26.15769 * 16 14 13 18 18 Si 1.86803 * 120.00066 * 206.15589 * 16 14 13 19 19 H 1.48496 * 109.47075 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.47126 * 59.99893 * 18 16 14 21 21 H 1.48495 * 109.46997 * 299.99994 * 18 16 14 22 22 C 1.44579 * 122.71265 * 317.50343 * 13 12 11 23 23 C 1.53002 * 109.47279 * 239.99770 * 2 1 3 24 24 C 1.53774 * 113.61435 * 159.13648 * 23 2 1 25 25 C 1.53953 * 87.01952 * 220.05141 * 24 23 2 26 26 C 1.53776 * 87.11422 * 25.36463 * 25 24 23 27 27 H 1.09001 * 109.46787 * 59.99983 * 1 2 3 28 28 H 1.09003 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46987 * 299.99844 * 1 2 3 30 30 H 0.97005 * 119.99610 * 0.02562 * 6 4 2 31 31 H 1.09008 * 108.51361 * 304.23261 * 9 7 6 32 32 H 1.08994 * 108.51236 * 61.88066 * 9 7 6 33 33 H 1.09002 * 109.49176 * 34.95010 * 10 9 7 34 34 H 1.08999 * 109.49481 * 155.00128 * 10 9 7 35 35 H 1.08997 * 109.36329 * 212.08109 * 11 10 9 36 36 H 1.08994 * 109.36439 * 331.69308 * 11 10 9 37 37 H 1.09003 * 109.13922 * 199.01286 * 12 11 10 38 38 H 1.09004 * 108.96228 * 80.27239 * 12 11 10 39 39 H 0.96996 * 120.00225 * 5.65679 * 17 16 14 40 40 H 1.09004 * 109.44706 * 211.02062 * 22 13 12 41 41 H 1.09001 * 109.44995 * 330.94048 * 22 13 12 42 42 H 1.08998 * 112.85417 * 290.33848 * 23 2 1 43 43 H 1.08998 * 113.61798 * 334.57075 * 24 23 2 44 44 H 1.09001 * 113.61491 * 105.47656 * 24 23 2 45 45 H 1.09000 * 113.53762 * 270.80759 * 25 24 23 46 46 H 1.09003 * 113.66737 * 139.93356 * 25 24 23 47 47 H 1.08995 * 113.61545 * 220.09142 * 26 25 24 48 48 H 1.08995 * 113.61550 * 89.18459 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6966 1.1192 6 7 1.7068 -0.2501 2.4546 7 6 2.1946 -0.9409 3.6508 8 1 3.1911 -1.3378 3.4569 9 6 2.2596 0.0138 4.7678 10 6 2.8234 -0.5686 6.0603 11 6 1.7159 -1.2476 6.8279 12 6 1.6406 -2.7409 6.4472 13 7 1.8423 -2.9522 5.0003 14 6 2.6314 -3.9945 4.5929 15 1 3.1588 -3.9370 3.6522 16 6 2.7536 -5.1251 5.3890 17 7 1.7887 -5.4499 6.2232 18 14 4.2873 -6.1855 5.2763 19 1 4.1725 -7.3240 6.2228 20 1 5.4790 -5.3710 5.6248 21 1 4.4297 -6.7043 3.8922 22 6 1.2364 -2.1076 3.9954 23 6 2.0401 -0.7213 -1.2492 24 6 3.4867 -0.3577 -1.6230 25 6 3.0234 -0.3619 -3.0911 26 6 1.6121 -0.0509 -2.5655 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.1488 0.5385 2.5435 31 1 2.8825 0.8563 4.4672 32 1 1.2534 0.3825 4.9669 33 1 3.6002 -1.2956 5.8232 34 1 3.2476 0.2325 6.6656 35 1 1.9084 -1.1562 7.8968 36 1 0.7659 -0.7686 6.5913 37 1 0.6633 -3.1328 6.7292 38 1 2.4098 -3.2853 6.9950 39 1 0.9586 -4.9481 6.2238 40 1 1.0413 -2.6944 3.0978 41 1 0.2977 -1.7057 4.3770 42 1 1.8521 -1.7947 -1.2247 43 1 3.7963 0.6244 -1.2657 44 1 4.2080 -1.1408 -1.3896 45 1 3.1056 -1.3373 -3.5707 46 1 3.4539 0.4420 -3.6882 47 1 0.8222 -0.5868 -3.0917 48 1 1.4082 1.0152 -2.4663 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034263738.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:02 Heat of formation + Delta-G solvation = -14.507347 kcal Electronic energy + Delta-G solvation = -25203.656826 eV Core-core repulsion = 21872.967484 eV Total energy + Delta-G solvation = -3330.689341 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17471 -38.69148 -37.45446 -34.67066 -33.45236 -32.85358 -30.76029 -29.84209 -26.27368 -25.80054 -25.30348 -24.45634 -23.47083 -22.35655 -20.21299 -19.83151 -19.36795 -19.13548 -17.19903 -16.90492 -16.10430 -15.35628 -15.13927 -14.97165 -14.61975 -14.03018 -13.83594 -13.54687 -13.26492 -13.02880 -12.91013 -12.58046 -12.57411 -12.52829 -12.18830 -12.10659 -11.68262 -11.64181 -11.28022 -11.10354 -10.93005 -10.64992 -10.58443 -10.35739 -10.25527 -10.18976 -10.15301 -10.05181 -9.88581 -9.76436 -9.28062 -9.21773 -8.77112 -8.16740 -6.78520 -5.96104 -3.14983 3.02538 3.47780 3.59173 3.59991 3.78694 4.49002 4.56974 4.59830 4.70254 4.80136 4.96721 5.09247 5.19220 5.27782 5.29639 5.37055 5.38010 5.55632 5.58962 5.62000 5.63479 5.68215 5.73988 5.79650 5.87112 5.91363 5.95187 6.01759 6.08812 6.11636 6.23159 6.23992 6.31761 6.46804 6.49009 6.56289 6.63000 6.74023 6.76081 6.86032 7.07271 7.16089 7.24306 7.89027 8.23101 8.64941 8.69998 9.26127 9.96491 10.31806 11.29678 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.004463 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.990374 B = 6271.747443 C = 7322.239263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.090 0.910 4 C 0.510 3.490 5 O -0.526 6.526 6 N -0.726 5.726 7 C 0.116 3.884 8 H 0.087 0.913 9 C -0.111 4.111 10 C -0.101 4.101 11 C -0.136 4.136 12 C 0.154 3.846 13 N -0.589 5.589 14 C -0.353 4.353 15 H 0.059 0.941 16 C -0.020 4.020 17 N -0.917 5.917 18 Si 1.059 2.941 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.293 1.293 22 C 0.161 3.839 23 C -0.087 4.087 24 C -0.133 4.133 25 C -0.143 4.143 26 C -0.136 4.136 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.389 0.611 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.017 0.983 38 H 0.069 0.931 39 H 0.268 0.732 40 H 0.049 0.951 41 H 0.026 0.974 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 16.146 -11.276 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.108 0.892 4 C 0.295 3.705 5 O -0.401 6.401 6 N -0.377 5.377 7 C 0.010 3.990 8 H 0.105 0.895 9 C -0.149 4.149 10 C -0.140 4.140 11 C -0.175 4.175 12 C 0.029 3.971 13 N -0.311 5.311 14 C -0.483 4.483 15 H 0.077 0.923 16 C -0.222 4.222 17 N -0.557 5.557 18 Si 0.889 3.111 19 H -0.212 1.212 20 H -0.221 1.221 21 H -0.220 1.220 22 C 0.032 3.968 23 C -0.106 4.106 24 C -0.170 4.170 25 C -0.181 4.181 26 C -0.173 4.173 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.222 0.778 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.948 14.064 -10.682 17.686 hybrid contribution -1.082 1.853 -0.600 2.228 sum -2.030 15.917 -11.282 19.615 Atomic orbital electron populations 1.21732 0.93146 1.02908 1.02129 1.21353 0.97275 1.00155 0.93454 0.89156 1.20537 0.80556 0.84895 0.84472 1.90750 1.37192 1.25630 1.86516 1.46203 1.53769 1.31596 1.06172 1.21141 1.01524 0.93794 0.82580 0.89474 1.20577 1.00483 0.97962 0.95909 1.20826 0.99294 0.99373 0.94466 1.21994 0.97673 0.99000 0.98874 1.21302 0.99324 0.91483 0.84979 1.43631 1.56851 1.31237 0.99409 1.20051 1.23806 0.95677 1.08729 0.92335 1.25765 1.03036 0.95528 0.97864 1.70798 1.04556 1.39364 1.41008 0.83609 0.75682 0.76016 0.75772 1.21243 1.22118 1.21960 1.20894 0.92086 0.90945 0.92902 1.22345 0.96169 1.00483 0.91616 1.22919 0.96977 1.01682 0.95468 1.22834 0.96821 1.01663 0.96737 1.22956 0.97065 1.00600 0.96708 0.91667 0.91936 0.92325 0.77770 0.93370 0.92974 0.90350 0.93190 0.92674 0.93448 0.96488 0.91282 0.92100 0.93306 0.95533 0.88386 0.90666 0.91051 0.90288 0.91766 0.91584 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.91 37.16 0.33 -1.01 16 2 C -0.10 -1.14 2.45 -91.77 -0.23 -1.37 16 3 H 0.09 0.86 7.98 -51.93 -0.41 0.44 16 4 C 0.51 8.13 7.10 -10.98 -0.08 8.05 16 5 O -0.53 -11.07 15.48 5.56 0.09 -10.98 16 6 N -0.73 -10.71 4.94 -55.62 -0.27 -10.99 16 7 C 0.12 2.13 2.35 -69.79 -0.16 1.97 16 8 H 0.09 1.96 7.56 -51.93 -0.39 1.57 16 9 C -0.11 -1.74 4.54 -29.79 -0.14 -1.88 16 10 C -0.10 -1.74 5.51 -28.01 -0.15 -1.89 16 11 C -0.14 -2.47 5.71 -27.12 -0.15 -2.62 16 12 C 0.15 3.60 4.56 -2.76 -0.01 3.59 16 13 N -0.59 -14.81 2.11 -171.88 -0.36 -15.18 16 14 C -0.35 -10.16 9.30 -15.06 -0.14 -10.30 16 15 H 0.06 1.78 7.95 -52.49 -0.42 1.37 16 16 C -0.02 -0.58 4.55 -17.43 -0.08 -0.66 16 17 N -0.92 -27.88 12.58 55.49 0.70 -27.18 16 18 Si 1.06 26.31 29.99 -169.99 -5.10 21.21 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 C 0.16 3.51 5.24 -4.09 -0.02 3.49 16 23 C -0.09 -1.02 2.51 -89.81 -0.23 -1.25 16 24 C -0.13 -1.53 7.54 -25.83 -0.19 -1.72 16 25 C -0.14 -1.34 8.09 -25.83 -0.21 -1.55 16 26 C -0.14 -1.22 6.75 -25.92 -0.17 -1.39 16 27 H 0.06 0.50 7.50 -51.93 -0.39 0.11 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 30 H 0.39 4.38 7.99 -40.82 -0.33 4.05 16 31 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.05 0.74 7.35 -51.93 -0.38 0.36 16 33 H 0.08 1.60 7.49 -51.93 -0.39 1.21 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16 37 H 0.02 0.42 7.17 -51.93 -0.37 0.05 16 38 H 0.07 1.80 6.72 -51.93 -0.35 1.45 16 39 H 0.27 8.19 6.40 -40.82 -0.26 7.93 16 40 H 0.05 1.20 7.99 -51.93 -0.41 0.78 16 41 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 42 H 0.10 1.38 7.91 -51.93 -0.41 0.97 16 43 H 0.07 0.80 7.99 -51.93 -0.41 0.39 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -32.57 365.67 -9.80 -42.37 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.72 Total: 3.77 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.64 Total: -8.54 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.06 Total: -53.35 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -5.10 Total: 21.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.57 -9.80 -42.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034263738.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.863 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds