Wall clock time and date at job start Fri Apr 10 2020 20:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46956 * 2 1 4 4 C 1.50703 * 109.46777 * 119.99307 * 2 1 3 5 5 O 1.21284 * 119.99381 * 119.99909 * 4 2 1 6 6 N 1.34771 * 120.00041 * 300.00408 * 4 2 1 7 7 C 1.46503 * 119.99916 * 180.02562 * 6 4 2 8 8 H 1.08999 * 108.45685 * 327.28672 * 7 6 4 9 9 C 1.52526 * 108.52529 * 209.71886 * 7 6 4 10 10 C 1.50123 * 105.41817 * 149.34793 * 9 7 6 11 11 C 1.54842 * 110.81269 * 97.68259 * 10 9 7 12 12 C 1.54409 * 110.07177 * 321.07362 * 11 10 9 13 13 N 1.43427 * 116.38916 * 318.65324 * 12 11 10 14 14 C 1.36940 * 120.53716 * 271.72689 * 13 12 11 15 15 H 1.08000 * 119.99587 * 141.75816 * 14 13 12 16 16 C 1.38810 * 119.99946 * 322.03092 * 14 13 12 17 17 N 1.31616 * 119.99672 * 157.56613 * 16 14 13 18 18 Si 1.86801 * 119.99710 * 337.56523 * 16 14 13 19 19 H 1.48501 * 109.47267 * 95.29088 * 18 16 14 20 20 H 1.48506 * 109.46818 * 215.28519 * 18 16 14 21 21 H 1.48496 * 109.47455 * 335.28471 * 18 16 14 22 22 C 1.46233 * 108.52312 * 84.99461 * 7 6 4 23 23 C 1.52994 * 109.47284 * 239.99567 * 2 1 3 24 24 C 1.53781 * 113.61440 * 159.14029 * 23 2 1 25 25 C 1.53951 * 87.02053 * 220.04866 * 24 23 2 26 26 C 1.53778 * 87.11197 * 25.36025 * 25 24 23 27 27 H 1.08996 * 109.47188 * 300.00724 * 1 2 3 28 28 H 1.09004 * 109.46470 * 60.00738 * 1 2 3 29 29 H 1.08999 * 109.46956 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00172 * 359.97438 * 6 4 2 31 31 H 1.09003 * 110.24856 * 268.32592 * 9 7 6 32 32 H 1.09001 * 110.24992 * 30.23042 * 9 7 6 33 33 H 1.08997 * 109.20918 * 218.03084 * 10 9 7 34 34 H 1.09000 * 109.20547 * 337.34159 * 10 9 7 35 35 H 1.08997 * 109.35879 * 81.34209 * 11 10 9 36 36 H 1.09003 * 109.35771 * 201.06550 * 11 10 9 37 37 H 1.09001 * 107.88467 * 196.93410 * 12 11 10 38 38 H 1.08998 * 108.09692 * 80.54020 * 12 11 10 39 39 H 0.97008 * 119.99269 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.84517 * 60.14598 * 22 7 6 41 41 H 1.08993 * 109.85097 * 299.16094 * 22 7 6 42 42 H 1.09009 * 112.85056 * 290.33273 * 23 2 1 43 43 H 1.09002 * 113.61237 * 334.56309 * 24 23 2 44 44 H 1.09001 * 113.61762 * 105.46677 * 24 23 2 45 45 H 1.09005 * 113.53723 * 270.81261 * 25 24 23 46 46 H 1.08996 * 113.67085 * 139.93334 * 25 24 23 47 47 H 1.09005 * 113.61725 * 220.09108 * 26 25 24 48 48 H 1.09000 * 113.61529 * 89.19351 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1193 6 7 1.7066 -0.2497 2.4546 7 6 2.1954 -0.9399 3.6509 8 1 2.2647 -2.0052 3.4306 9 6 1.1794 -0.7452 4.7718 10 6 1.2790 -1.9801 5.6196 11 6 2.1849 -1.7309 6.8504 12 6 3.3919 -0.8544 6.4511 13 7 4.0101 -1.1560 5.1925 14 6 5.0136 -2.0845 5.1150 15 1 5.0674 -2.7519 4.2676 16 6 5.9584 -2.1717 6.1283 17 7 6.6334 -3.2877 6.3044 18 14 6.2716 -0.7049 7.2417 19 1 5.4607 -0.8400 8.4784 20 1 7.7124 -0.6526 7.5979 21 1 5.8910 0.5440 6.5342 22 6 3.5349 -0.4415 3.9601 23 6 2.0401 -0.7213 -1.2491 24 6 3.4868 -0.3577 -1.6229 25 6 3.0235 -0.3621 -3.0910 26 6 1.6122 -0.0511 -2.5654 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.1492 0.5391 2.5435 31 1 1.4309 0.1375 5.3597 32 1 0.1755 -0.6487 4.3584 33 1 0.2827 -2.2633 5.9591 34 1 1.6981 -2.7911 5.0241 35 1 1.6099 -1.2250 7.6258 36 1 2.5455 -2.6858 7.2329 37 1 4.1468 -0.9487 7.2317 38 1 3.0630 0.1845 6.4279 39 1 7.2938 -3.3484 7.0123 40 1 3.4964 0.6318 4.1464 41 1 4.2083 -0.6496 3.1288 42 1 1.8521 -1.7948 -1.2245 43 1 3.7963 0.6245 -1.2657 44 1 4.2081 -1.1409 -1.3893 45 1 3.1057 -1.3375 -3.5705 46 1 3.4541 0.4417 -3.6881 47 1 0.8223 -0.5870 -3.0917 48 1 1.4083 1.0151 -2.4664 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034263739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:05 Heat of formation + Delta-G solvation = 0.379800 kcal Electronic energy + Delta-G solvation = -25171.896083 eV Core-core repulsion = 21841.852297 eV Total energy + Delta-G solvation = -3330.043786 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29472 -38.85532 -37.53383 -34.56126 -33.34546 -32.88915 -31.27615 -29.93456 -26.37852 -26.24417 -25.31790 -24.61699 -23.70595 -22.33388 -20.24653 -20.05635 -19.41427 -19.25932 -17.03493 -16.35047 -16.23611 -15.50345 -15.30950 -15.18934 -14.57518 -14.25838 -14.05817 -13.85688 -13.21870 -13.01030 -12.92290 -12.74367 -12.57512 -12.53602 -12.23494 -12.02291 -11.86648 -11.68992 -11.65369 -11.30670 -11.09591 -10.73723 -10.59800 -10.39955 -10.36879 -10.33258 -10.19184 -10.07690 -9.97473 -9.63992 -9.39653 -9.35790 -8.79154 -8.38446 -6.76478 -5.94219 -3.37052 2.96226 3.34418 3.41943 3.49272 3.55033 4.46162 4.55896 4.56589 4.58280 4.80055 4.89719 5.06226 5.06876 5.11297 5.24896 5.34401 5.38432 5.39818 5.55029 5.57585 5.58255 5.64606 5.70031 5.79526 5.86488 5.89180 5.93368 5.95981 5.97737 6.12796 6.14041 6.19264 6.22963 6.37813 6.47669 6.56195 6.62091 6.65907 6.77140 6.82300 6.85960 6.96516 7.03040 7.81892 8.13184 8.41698 8.57359 9.05960 9.76152 10.17711 11.21315 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.019894 B = 0.004208 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.137920 B = 6652.713005 C = 7534.191722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.093 0.907 4 C 0.511 3.489 5 O -0.529 6.529 6 N -0.732 5.732 7 C 0.130 3.870 8 H 0.089 0.911 9 C -0.119 4.119 10 C -0.106 4.106 11 C -0.142 4.142 12 C 0.147 3.853 13 N -0.594 5.594 14 C -0.264 4.264 15 H 0.078 0.922 16 C 0.038 3.962 17 N -0.899 5.899 18 Si 0.880 3.120 19 H -0.286 1.286 20 H -0.303 1.303 21 H -0.272 1.272 22 C 0.132 3.868 23 C -0.087 4.087 24 C -0.133 4.133 25 C -0.143 4.143 26 C -0.136 4.136 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.392 0.608 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.842 10.097 -12.338 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.111 0.889 4 C 0.296 3.704 5 O -0.404 6.404 6 N -0.384 5.384 7 C 0.026 3.974 8 H 0.107 0.893 9 C -0.156 4.156 10 C -0.144 4.144 11 C -0.183 4.183 12 C 0.019 3.981 13 N -0.317 5.317 14 C -0.393 4.393 15 H 0.096 0.904 16 C -0.162 4.162 17 N -0.540 5.540 18 Si 0.711 3.289 19 H -0.214 1.214 20 H -0.231 1.231 21 H -0.197 1.197 22 C 0.007 3.993 23 C -0.106 4.106 24 C -0.171 4.171 25 C -0.181 4.181 26 C -0.173 4.173 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.225 0.775 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.145 9.262 -12.337 20.929 hybrid contribution -0.011 1.125 0.901 1.441 sum -14.156 10.386 -11.435 20.953 Atomic orbital electron populations 1.21726 0.93230 1.02658 1.02210 1.21368 0.97156 1.00427 0.93429 0.88909 1.20580 0.80366 0.84856 0.84593 1.90747 1.37042 1.26076 1.86583 1.46483 1.53763 1.31943 1.06224 1.20880 0.94871 0.98965 0.82690 0.89284 1.21303 0.97533 0.99927 0.96885 1.21290 0.98240 0.97444 0.97428 1.22738 0.97556 1.01703 0.96269 1.20597 0.93297 0.95001 0.89193 1.44039 1.38944 1.46691 1.02010 1.18777 1.02633 1.08854 1.09011 0.90420 1.25453 0.96185 0.96379 0.98210 1.69883 1.26948 1.24411 1.32742 0.86869 0.75887 0.85721 0.80410 1.21437 1.23073 1.19657 1.20714 0.93324 0.94172 0.91113 1.22336 0.96374 1.00287 0.91593 1.22930 0.96858 1.01942 0.95346 1.22836 0.96749 1.01657 0.96849 1.22958 0.97064 1.00627 0.96671 0.92319 0.91636 0.92144 0.77522 0.91156 0.92064 0.93617 0.91306 0.93243 0.92058 0.94128 0.95356 0.92757 0.95210 0.91017 0.88532 0.90504 0.90925 0.90335 0.91722 0.91674 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.91 37.16 0.33 -0.81 16 2 C -0.10 -1.07 2.45 -91.77 -0.23 -1.30 16 3 H 0.09 0.85 7.98 -51.93 -0.41 0.43 16 4 C 0.51 7.56 7.04 -10.99 -0.08 7.48 16 5 O -0.53 -10.45 15.36 5.55 0.09 -10.37 16 6 N -0.73 -9.92 4.76 -57.21 -0.27 -10.20 16 7 C 0.13 2.23 2.01 -71.39 -0.14 2.09 16 8 H 0.09 1.86 6.22 -51.93 -0.32 1.54 16 9 C -0.12 -1.74 5.25 -28.40 -0.15 -1.89 16 10 C -0.11 -1.77 5.65 -27.19 -0.15 -1.92 16 11 C -0.14 -2.66 6.40 -25.02 -0.16 -2.82 16 12 C 0.15 3.19 4.16 -4.93 -0.02 3.17 16 13 N -0.59 -14.26 2.19 -175.41 -0.38 -14.64 16 14 C -0.26 -7.59 9.95 -15.06 -0.15 -7.74 16 15 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 16 C 0.04 1.12 5.31 -17.43 -0.09 1.03 16 17 N -0.90 -27.97 13.97 55.49 0.78 -27.20 16 18 Si 0.88 22.69 25.10 -169.99 -4.27 18.43 16 19 H -0.29 -7.15 6.73 56.52 0.38 -6.77 16 20 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 21 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.13 2.69 5.54 -5.20 -0.03 2.66 16 23 C -0.09 -0.96 2.51 -89.81 -0.23 -1.18 16 24 C -0.13 -1.53 7.54 -25.83 -0.19 -1.72 16 25 C -0.14 -1.32 8.09 -25.83 -0.21 -1.53 16 26 C -0.14 -1.14 6.75 -25.92 -0.17 -1.32 16 27 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 28 H 0.06 0.43 7.50 -51.93 -0.39 0.04 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.39 3.96 8.03 -40.82 -0.33 3.63 16 31 H 0.07 1.02 6.28 -51.93 -0.33 0.69 16 32 H 0.06 0.75 8.03 -51.93 -0.42 0.33 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.33 6.82 -51.93 -0.35 0.98 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.04 0.98 3.06 -51.93 -0.16 0.83 16 38 H 0.03 0.55 6.89 -51.93 -0.36 0.19 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 41 H 0.07 1.63 7.92 -51.93 -0.41 1.22 16 42 H 0.10 1.24 7.91 -51.92 -0.41 0.83 16 43 H 0.08 0.84 7.99 -51.93 -0.41 0.43 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -32.79 359.80 -8.82 -41.61 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.50 Total: 2.75 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -1.67 Total: -5.81 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.12 Total: -52.03 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.27 Total: 18.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.79 -8.82 -41.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034263739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.989 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds