Wall clock time and date at job start Fri Apr 10 2020 20:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47192 * 2 1 4 4 C 1.52999 * 109.47343 * 120.00283 * 2 1 3 5 5 H 1.08996 * 109.46820 * 300.00059 * 4 2 1 6 6 C 1.52999 * 109.47206 * 180.02562 * 4 2 1 7 7 C 1.50697 * 109.46948 * 59.99949 * 4 2 1 8 8 O 1.21276 * 120.00128 * 24.32277 * 7 4 2 9 9 N 1.34778 * 119.99674 * 204.31831 * 7 4 2 10 10 C 1.46894 * 120.46150 * 184.95431 * 9 7 4 11 11 C 1.53355 * 108.74294 * 124.39129 * 10 9 7 12 12 C 1.52552 * 109.12592 * 52.26012 * 11 10 9 13 13 C 1.52962 * 114.06014 * 75.54158 * 12 11 10 14 14 N 1.47162 * 87.85184 * 139.44442 * 13 12 11 15 15 C 1.36939 * 136.00569 * 153.08471 * 14 13 12 16 16 H 1.08005 * 119.99483 * 352.61615 * 15 14 13 17 17 C 1.38809 * 120.00316 * 172.61406 * 15 14 13 18 18 N 1.31614 * 119.99992 * 5.08630 * 17 15 14 19 19 Si 1.86807 * 119.99768 * 185.08307 * 17 15 14 20 20 H 1.48497 * 109.46761 * 94.95868 * 19 17 15 21 21 H 1.48497 * 109.46684 * 214.95470 * 19 17 15 22 22 H 1.48501 * 109.47329 * 334.95607 * 19 17 15 23 23 C 1.47175 * 87.99880 * 333.33518 * 14 13 12 24 24 C 1.52558 * 113.43419 * 302.66876 * 12 11 10 25 25 C 1.46887 * 120.46557 * 4.98405 * 9 7 4 26 26 H 1.08996 * 109.47210 * 299.99897 * 1 2 3 27 27 H 1.09001 * 109.47084 * 59.99456 * 1 2 3 28 28 H 1.08996 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47509 * 240.00160 * 2 1 3 30 30 H 1.08999 * 109.47041 * 300.00217 * 3 2 1 31 31 H 1.09000 * 109.46837 * 60.00449 * 3 2 1 32 32 H 1.09001 * 109.47249 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47724 * 66.40827 * 6 4 2 34 34 H 1.08998 * 109.46963 * 186.40951 * 6 4 2 35 35 H 1.09009 * 109.46895 * 306.40424 * 6 4 2 36 36 H 1.08998 * 109.59158 * 4.61440 * 10 9 7 37 37 H 1.09000 * 109.59626 * 244.16949 * 10 9 7 38 38 H 1.09002 * 109.52776 * 292.36694 * 11 10 9 39 39 H 1.08998 * 109.58855 * 172.19474 * 11 10 9 40 40 H 1.08989 * 113.49037 * 24.69898 * 13 12 11 41 41 H 1.09005 * 113.48781 * 254.18222 * 13 12 11 42 42 H 0.97003 * 120.00028 * 179.97438 * 18 17 15 43 43 H 1.09004 * 113.48701 * 141.41940 * 23 14 13 44 44 H 1.09000 * 113.48860 * 271.92173 * 23 14 13 45 45 H 1.08996 * 109.53012 * 177.21569 * 24 12 11 46 46 H 1.08997 * 109.52828 * 297.42752 * 24 12 11 47 47 H 1.09002 * 109.58864 * 355.37242 * 25 9 7 48 48 H 1.08999 * 109.59111 * 115.81937 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1391 6 6 3.5700 -0.7207 1.2495 7 6 1.5377 -2.1421 1.2491 8 8 1.2376 -2.6791 0.2039 9 7 1.4221 -2.8160 2.4106 10 6 1.0377 -4.2337 2.4139 11 6 2.1082 -5.0327 3.1672 12 6 2.3405 -4.3934 4.5327 13 6 1.2340 -4.6763 5.5501 14 7 2.2864 -4.8451 6.5648 15 6 2.3776 -4.6989 7.9233 16 1 1.5549 -4.2706 8.4767 17 6 3.5273 -5.1011 8.5891 18 7 4.5675 -5.5296 7.9060 19 14 3.5981 -5.0341 10.4546 20 1 3.2362 -6.3622 11.0116 21 1 4.9731 -4.6747 10.8851 22 1 2.6413 -4.0120 10.9499 23 6 3.1997 -5.2339 5.4782 24 6 2.7530 -2.9267 4.4536 25 6 1.6780 -2.1429 3.6908 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 3.9330 0.3006 1.3644 34 1 3.9334 -1.3307 2.0765 35 1 3.9337 -1.1318 0.3076 36 1 0.9660 -4.5954 1.3881 37 1 0.0757 -4.3506 2.9129 38 1 3.0376 -5.0237 2.5978 39 1 1.7715 -6.0610 3.2988 40 1 0.6782 -5.5910 5.3444 41 1 0.5851 -3.8203 5.7356 42 1 5.3710 -5.8103 8.3712 43 1 4.2120 -4.8493 5.6031 44 1 3.1779 -6.3002 5.2530 45 1 2.8536 -2.5217 5.4605 46 1 3.7051 -2.8438 3.9296 47 1 2.0283 -1.1273 3.5061 48 1 0.7604 -2.1142 4.2785 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035806718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:15:11 Heat of formation + Delta-G solvation = 4.110008 kcal Electronic energy + Delta-G solvation = -25242.384031 eV Core-core repulsion = 21912.501999 eV Total energy + Delta-G solvation = -3329.882032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59171 -39.07778 -36.43422 -35.63611 -32.60127 -31.59526 -30.49516 -30.20886 -27.51072 -26.86644 -24.96951 -24.57616 -23.35185 -23.10549 -21.50683 -20.45887 -18.97574 -17.70942 -16.86264 -16.67183 -15.95826 -15.26142 -14.89921 -14.77482 -14.51833 -14.24747 -13.88541 -13.83989 -13.63466 -13.40050 -12.82097 -12.53204 -12.50136 -12.31502 -12.24060 -12.20330 -12.06356 -11.65221 -11.59442 -11.13547 -11.09549 -11.03652 -10.87794 -10.84790 -10.81058 -10.66076 -10.37523 -10.20737 -9.75583 -9.60211 -9.45074 -9.18610 -8.80431 -8.36704 -6.85837 -5.79599 -3.10388 2.73022 3.12701 3.37355 3.42688 3.44655 4.44454 4.45079 4.53576 4.74796 4.92219 5.03941 5.06892 5.15896 5.21468 5.29546 5.36581 5.37118 5.41195 5.49502 5.51514 5.61517 5.66089 5.69395 5.71152 5.72715 5.78142 5.85356 5.89900 5.93980 6.02248 6.08429 6.18029 6.22929 6.25764 6.29997 6.35932 6.51953 6.59427 6.66820 6.80631 6.84746 7.22738 7.34145 7.55622 7.56242 7.96224 8.29797 9.02558 9.69222 10.65615 11.38550 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.003548 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.086319 B = 7890.307635 C = 8278.550002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.148 4.148 4 C -0.109 4.109 5 H 0.092 0.908 6 C -0.144 4.144 7 C 0.521 3.479 8 O -0.550 6.550 9 N -0.605 5.605 10 C 0.115 3.885 11 C -0.113 4.113 12 C -0.116 4.116 13 C 0.127 3.873 14 N -0.608 5.608 15 C -0.218 4.218 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.917 5.917 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.170 3.830 24 C -0.094 4.094 25 C 0.105 3.895 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.035 0.965 42 H 0.253 0.747 43 H 0.064 0.936 44 H 0.025 0.975 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 11.046 -14.242 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.097 4.097 3 C -0.206 4.206 4 C -0.130 4.130 5 H 0.110 0.890 6 C -0.201 4.201 7 C 0.309 3.691 8 O -0.428 6.428 9 N -0.338 5.338 10 C -0.007 4.007 11 C -0.152 4.152 12 C -0.117 4.117 13 C 0.001 3.999 14 N -0.334 5.334 15 C -0.345 4.345 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.564 5.564 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.044 3.956 24 C -0.132 4.132 25 C -0.017 4.017 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.101 0.899 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.895 10.742 -14.426 18.640 hybrid contribution 0.081 -0.283 1.299 1.332 sum -4.814 10.458 -13.127 17.461 Atomic orbital electron populations 1.21890 0.95111 1.02578 1.01239 1.20952 0.96003 0.95475 0.97285 1.21903 1.01236 0.95652 1.01765 1.21437 0.97787 0.93206 1.00567 0.88989 1.21790 0.92591 1.02768 1.02956 1.20587 0.77076 0.88256 0.83157 1.90638 1.50516 1.70255 1.31378 1.48145 1.67905 1.11465 1.06238 1.21595 0.97641 0.79901 1.01610 1.21723 0.98644 0.98891 0.95956 1.22094 1.01011 0.95823 0.92776 1.22402 0.92146 0.97233 0.88162 1.45559 1.07105 1.78914 1.01780 1.18918 1.01019 1.34559 0.80032 0.90237 1.24821 0.96529 1.01116 0.97835 1.69847 1.03710 1.48997 1.33801 0.86162 0.76960 0.77662 0.85389 1.21672 1.21724 1.20555 1.21969 0.95627 0.94509 0.83456 1.21420 0.96883 0.93941 1.00963 1.21922 0.99794 0.96171 0.83858 0.93133 0.92771 0.91800 0.90213 0.92610 0.92674 0.92288 0.91264 0.91743 0.92007 0.89593 0.91670 0.91922 0.90823 0.95252 0.94630 0.93679 0.91745 0.95696 0.89414 0.92089 0.89949 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.91 37.16 0.33 -1.20 16 2 C -0.08 -0.78 2.14 -90.62 -0.19 -0.97 16 3 C -0.15 -1.15 8.84 37.16 0.33 -0.82 16 4 C -0.11 -1.14 1.48 -91.77 -0.14 -1.28 16 5 H 0.09 0.86 6.25 -51.93 -0.32 0.54 16 6 C -0.14 -1.38 8.50 37.16 0.32 -1.07 16 7 C 0.52 7.11 6.01 -10.99 -0.07 7.04 16 8 O -0.55 -9.12 14.37 5.56 0.08 -9.04 16 9 N -0.60 -8.12 2.94 -172.63 -0.51 -8.63 16 10 C 0.11 1.58 6.33 -3.64 -0.02 1.56 16 11 C -0.11 -1.69 5.30 -26.78 -0.14 -1.83 16 12 C -0.12 -2.02 0.84 -155.02 -0.13 -2.15 16 13 C 0.13 2.49 7.63 -8.20 -0.06 2.43 16 14 N -0.61 -15.11 3.54 -184.64 -0.65 -15.76 16 15 C -0.22 -5.98 10.74 -15.06 -0.16 -6.15 16 16 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -26.88 11.66 55.49 0.65 -26.23 16 19 Si 0.91 21.82 29.56 -169.99 -5.02 16.80 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.17 3.88 6.44 -8.20 -0.05 3.82 16 24 C -0.09 -1.47 5.27 -26.77 -0.14 -1.61 16 25 C 0.11 1.32 6.14 -3.64 -0.02 1.30 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 29 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 6.58 -51.93 -0.34 0.08 16 33 H 0.07 0.54 6.79 -51.93 -0.35 0.19 16 34 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 35 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 40 H 0.03 0.58 8.06 -51.94 -0.42 0.16 16 41 H 0.04 0.67 7.53 -51.93 -0.39 0.27 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.06 1.63 7.35 -51.93 -0.38 1.25 16 44 H 0.03 0.60 8.09 -51.93 -0.42 0.18 16 45 H 0.09 1.58 7.95 -51.93 -0.41 1.17 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.08 0.86 5.30 -51.93 -0.28 0.58 16 48 H 0.07 0.88 7.60 -51.93 -0.39 0.49 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -31.16 363.71 -8.82 -39.98 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -8.59 Total: -1.42 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.25 Total: -1.17 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.51 Total: -50.62 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.16 -8.82 -39.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035806718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.085 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds