Wall clock time and date at job start Fri Apr 10 2020 20:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.49676 * 2 1 4 4 C 1.53193 * 109.49993 * 120.06571 * 2 1 3 5 5 N 1.46917 * 108.77733 * 174.59019 * 4 2 1 6 6 C 1.34774 * 120.63357 * 126.37202 * 5 4 2 7 7 O 1.21287 * 119.99934 * 4.69679 * 6 5 4 8 8 C 1.50699 * 120.00191 * 184.70924 * 6 5 4 9 9 C 1.52996 * 109.47165 * 204.69089 * 8 6 5 10 10 C 1.52997 * 109.47391 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.47189 * 59.99923 * 10 9 8 12 12 C 1.52996 * 109.47016 * 300.00306 * 11 10 9 13 13 C 1.52997 * 109.47391 * 59.99818 * 12 11 10 14 14 C 1.46934 * 118.73651 * 306.64196 * 5 4 2 15 15 C 1.52756 * 109.00617 * 53.31085 * 14 5 4 16 16 C 1.53038 * 109.38505 * 305.58551 * 15 14 5 17 17 H 1.09000 * 109.44999 * 181.25472 * 16 15 14 18 18 N 1.46502 * 109.46059 * 301.22225 * 16 15 14 19 19 C 1.36932 * 120.00024 * 275.06418 * 18 16 15 20 20 H 1.07994 * 120.00147 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00171 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00566 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 119.99671 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46866 * 90.00070 * 23 21 19 25 25 H 1.48499 * 109.46721 * 209.99774 * 23 21 19 26 26 H 1.48499 * 109.47209 * 329.99604 * 23 21 19 27 27 H 1.08990 * 109.47042 * 299.93286 * 1 2 3 28 28 H 1.08996 * 109.46976 * 59.93740 * 1 2 3 29 29 H 1.09003 * 109.46657 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.58491 * 54.79740 * 4 2 1 31 31 H 1.09007 * 109.69983 * 294.44778 * 4 2 1 32 32 H 1.09001 * 109.46890 * 324.68892 * 8 6 5 33 33 H 1.08994 * 109.47428 * 299.99756 * 9 8 6 34 34 H 1.09010 * 109.47373 * 59.99575 * 9 8 6 35 35 H 1.09001 * 109.47111 * 300.00077 * 10 9 8 36 36 H 1.09007 * 109.47378 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.47178 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.46969 * 60.00066 * 11 10 9 39 39 H 1.09001 * 109.47056 * 299.99707 * 12 11 10 40 40 H 1.09003 * 109.47251 * 180.02562 * 12 11 10 41 41 H 1.09002 * 109.47187 * 180.02562 * 13 12 11 42 42 H 1.09001 * 109.47111 * 59.99923 * 13 12 11 43 43 H 1.08997 * 109.58212 * 173.14841 * 14 5 4 44 44 H 1.08996 * 109.58477 * 293.56734 * 14 5 4 45 45 H 1.09002 * 109.55974 * 185.55440 * 15 14 5 46 46 H 1.08995 * 109.36366 * 65.50438 * 15 14 5 47 47 H 0.97002 * 119.99929 * 95.07028 * 18 16 15 48 48 H 0.97001 * 120.00312 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2498 5 7 3.5046 -0.8287 1.1698 6 6 4.2812 -0.3850 2.1780 7 8 3.7725 0.0284 3.1985 8 6 5.7815 -0.4021 2.0373 9 6 6.4233 -0.4566 3.4251 10 6 7.9465 -0.4746 3.2822 11 6 8.4058 0.7921 2.5574 12 6 7.7640 0.8466 1.1696 13 6 6.2408 0.8646 1.3124 14 6 4.1056 -1.4215 -0.0329 15 6 3.5709 -0.6953 -1.2658 16 6 2.0409 -0.7234 -1.2482 17 1 1.6584 -0.2249 -2.1388 18 7 1.5785 -2.1134 -1.2303 19 6 1.4483 -2.8068 -2.4038 20 1 1.6868 -2.3292 -3.3426 21 6 1.0106 -4.1240 -2.3869 22 7 0.8859 -4.7907 -3.5148 23 14 0.5986 -4.9504 -0.7630 24 1 -0.8353 -4.7307 -0.4456 25 1 0.8648 -6.4076 -0.8677 26 1 1.4389 -4.3700 0.3151 27 1 -0.3633 0.5127 0.8905 28 1 -0.3633 0.5148 -0.8894 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -1.7212 1.2985 31 1 1.7637 -0.1595 2.1403 32 1 6.0825 -1.2783 1.4631 33 1 6.1223 0.4195 3.9993 34 1 6.0964 -1.3593 3.9414 35 1 8.2472 -1.3510 2.7081 36 1 8.4037 -0.5139 4.2710 37 1 9.4909 0.7790 2.4552 38 1 8.1050 1.6685 3.1315 39 1 8.0647 -0.0298 0.5955 40 1 8.0915 1.7488 0.6530 41 1 5.7835 0.9030 0.3237 42 1 5.9400 1.7410 1.8865 43 1 5.1896 -1.3158 0.0104 44 1 3.8414 -2.4774 -0.0908 45 1 3.9335 -1.1902 -2.1667 46 1 3.9160 0.3386 -1.2542 47 1 1.3644 -2.5425 -0.3871 48 1 0.5798 -5.7111 -3.5030 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035895549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:07 Heat of formation + Delta-G solvation = -49.269268 kcal Electronic energy + Delta-G solvation = -25564.605547 eV Core-core repulsion = 22232.408816 eV Total energy + Delta-G solvation = -3332.196731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52243 -38.51943 -37.23291 -34.41434 -32.98798 -31.57774 -31.09329 -30.91084 -29.76991 -26.57388 -25.29827 -23.28976 -23.04146 -22.72350 -21.69541 -20.25478 -19.34739 -18.14337 -17.87434 -16.95213 -16.10491 -15.28782 -15.00908 -14.74359 -14.50383 -14.30036 -14.14761 -13.95293 -13.67342 -13.60434 -12.94869 -12.81431 -12.61643 -12.40712 -12.35062 -12.32553 -11.72089 -11.60110 -11.47762 -11.36399 -11.23362 -11.01679 -10.96338 -10.79715 -10.67809 -10.58545 -10.42742 -10.27626 -10.23098 -9.86932 -9.58166 -9.41429 -8.97465 -8.33017 -7.30751 -5.81495 -3.16686 2.76517 3.19068 3.32256 3.35553 3.41963 4.43137 4.51614 4.54186 4.57556 4.88770 4.99014 5.05697 5.09419 5.13645 5.19705 5.27090 5.29733 5.34802 5.36261 5.43552 5.51421 5.58249 5.63272 5.66034 5.75969 5.83756 5.85968 5.90560 5.90943 5.94257 6.00514 6.03925 6.07750 6.12550 6.21436 6.27170 6.30492 6.36790 6.48871 6.56467 6.65137 6.73827 6.89382 7.64565 7.95037 8.34677 8.37758 9.16052 9.88773 10.08717 11.36935 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.019719 B = 0.004434 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.615100 B = 6313.185005 C = 6554.960845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.070 0.930 4 C 0.117 3.883 5 N -0.603 5.603 6 C 0.517 3.483 7 O -0.554 6.554 8 C -0.107 4.107 9 C -0.101 4.101 10 C -0.119 4.119 11 C -0.121 4.121 12 C -0.117 4.117 13 C -0.107 4.107 14 C 0.110 3.890 15 C -0.149 4.149 16 C 0.185 3.815 17 H 0.060 0.940 18 N -0.744 5.744 19 C -0.241 4.241 20 H 0.091 0.909 21 C 0.008 3.992 22 N -0.933 5.933 23 Si 0.877 3.123 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.279 1.279 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.457 11.544 10.527 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.089 0.911 4 C -0.005 4.005 5 N -0.335 5.335 6 C 0.306 3.694 7 O -0.432 6.432 8 C -0.128 4.128 9 C -0.138 4.138 10 C -0.157 4.157 11 C -0.158 4.158 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.013 4.013 15 C -0.190 4.190 16 C 0.075 3.925 17 H 0.078 0.922 18 N -0.387 5.387 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.188 4.188 22 N -0.581 5.581 23 Si 0.708 3.292 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.205 1.205 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.162 11.664 10.810 20.020 hybrid contribution -0.364 -0.919 0.917 1.348 sum 11.798 10.745 11.726 19.803 Atomic orbital electron populations 1.21675 0.94232 1.02772 1.00917 1.21751 0.96496 0.99240 0.95639 0.91115 1.21616 0.79181 1.00937 0.98797 1.48170 1.06876 1.60076 1.18409 1.20631 0.89271 0.76826 0.82709 1.90641 1.75684 1.48064 1.28821 1.21361 0.91584 1.00709 0.99158 1.21369 0.94382 1.03096 0.95003 1.21551 0.95506 0.98140 1.00465 1.21556 0.99761 0.98262 0.96248 1.21523 0.94635 1.02162 0.97135 1.21464 0.96108 0.96434 1.00450 1.21717 0.96991 0.98668 0.83877 1.22426 1.00009 0.98983 0.97621 1.20178 0.90964 0.86161 0.95198 0.92211 1.42845 1.80661 1.09390 1.05833 1.19054 1.37544 0.94179 0.86295 0.89159 1.24624 1.01538 0.96685 0.95971 1.69687 1.53108 1.10859 1.24442 0.86676 0.78526 0.79290 0.84711 1.21031 1.21753 1.20516 0.93544 0.92297 0.91723 0.91709 0.89637 0.88929 0.90871 0.91842 0.91916 0.91825 0.92068 0.91952 0.91680 0.91671 0.91191 0.91417 0.90567 0.90344 0.90218 0.92962 0.80583 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.06 37.16 0.34 -1.73 16 2 C -0.11 -1.71 2.67 -90.50 -0.24 -1.96 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.90 5.41 -3.72 -0.02 1.88 16 5 N -0.60 -9.32 2.98 -173.04 -0.52 -9.83 16 6 C 0.52 7.91 6.81 -10.99 -0.07 7.83 16 7 O -0.55 -10.13 15.52 5.55 0.09 -10.04 16 8 C -0.11 -1.25 1.69 -91.77 -0.15 -1.41 16 9 C -0.10 -1.11 4.73 -26.73 -0.13 -1.23 16 10 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 11 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 12 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 13 C -0.11 -1.08 5.07 -26.73 -0.14 -1.22 16 14 C 0.11 1.63 5.94 -3.93 -0.02 1.61 16 15 C -0.15 -2.31 5.76 -26.84 -0.15 -2.46 16 16 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 17 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 18 N -0.74 -16.10 3.45 -53.39 -0.18 -16.28 16 19 C -0.24 -6.34 10.41 -15.06 -0.16 -6.50 16 20 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 21 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 22 N -0.93 -28.42 13.97 55.49 0.78 -27.64 16 23 Si 0.88 21.56 27.74 -169.99 -4.71 16.84 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.09 7.53 -51.93 -0.39 0.70 16 30 H 0.06 1.14 6.64 -51.93 -0.34 0.79 16 31 H 0.09 1.40 7.03 -51.93 -0.37 1.03 16 32 H 0.09 1.02 6.30 -51.93 -0.33 0.69 16 33 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 34 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.93 5.18 -51.93 -0.27 0.66 16 44 H 0.08 1.37 7.74 -51.93 -0.40 0.96 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.36 7.90 3.78 -40.82 -0.15 7.75 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -30.48 357.96 -9.23 -39.71 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -8.58 Total: 7.26 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.49 Total: -5.41 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.08 Total: -53.76 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.48 -9.23 -39.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035895549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.563 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds