Wall clock time and date at job start Fri Apr 10 2020 20:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.49986 * 2 1 4 4 C 1.53199 * 109.52741 * 120.07966 * 2 1 3 5 5 N 1.46924 * 108.77777 * 174.60501 * 4 2 1 6 6 C 1.34770 * 120.63320 * 126.41390 * 5 4 2 7 7 O 1.21282 * 120.00085 * 354.58912 * 6 5 4 8 8 C 1.50699 * 120.00437 * 174.58363 * 6 5 4 9 9 C 1.52997 * 109.47546 * 214.69752 * 8 6 5 10 10 C 1.53002 * 109.47055 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47022 * 59.99811 * 10 9 8 12 12 C 1.53001 * 109.47137 * 299.99710 * 11 10 9 13 13 C 1.52993 * 109.47033 * 60.00372 * 12 11 10 14 14 C 1.46930 * 118.73647 * 306.38905 * 5 4 2 15 15 C 1.53195 * 108.76159 * 53.62038 * 14 5 4 16 16 C 1.53035 * 109.49919 * 239.93317 * 2 1 3 17 17 H 1.08996 * 109.46274 * 298.65957 * 16 2 1 18 18 N 1.46503 * 109.45744 * 58.63238 * 16 2 1 19 19 C 1.36939 * 119.99804 * 205.02957 * 18 16 2 20 20 H 1.07995 * 119.99945 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99558 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00417 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99545 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47110 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47567 * 300.00141 * 23 21 19 26 26 H 1.48501 * 109.47253 * 60.00271 * 23 21 19 27 27 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47207 * 300.06271 * 1 2 3 29 29 H 1.08998 * 109.47200 * 60.06360 * 1 2 3 30 30 H 1.09006 * 109.58648 * 294.39168 * 4 2 1 31 31 H 1.09003 * 109.58372 * 54.81543 * 4 2 1 32 32 H 1.09002 * 109.46755 * 334.69875 * 8 6 5 33 33 H 1.09002 * 109.46671 * 299.99809 * 9 8 6 34 34 H 1.08999 * 109.46863 * 59.99699 * 9 8 6 35 35 H 1.09002 * 109.46929 * 299.99929 * 10 9 8 36 36 H 1.08995 * 109.46869 * 180.02562 * 10 9 8 37 37 H 1.09008 * 109.46863 * 180.02562 * 11 10 9 38 38 H 1.09002 * 109.47172 * 60.00267 * 11 10 9 39 39 H 1.09002 * 109.47021 * 300.00374 * 12 11 10 40 40 H 1.09004 * 109.47070 * 180.02562 * 12 11 10 41 41 H 1.08996 * 109.47467 * 179.97438 * 13 12 11 42 42 H 1.09002 * 109.47215 * 60.00121 * 13 12 11 43 43 H 1.08999 * 109.58621 * 173.39689 * 14 5 4 44 44 H 1.08997 * 109.58610 * 293.68592 * 14 5 4 45 45 H 1.09001 * 109.48560 * 185.39701 * 15 14 5 46 46 H 1.08997 * 109.50889 * 65.30004 * 15 14 5 47 47 H 0.97000 * 120.00426 * 25.02401 * 18 16 2 48 48 H 0.97002 * 119.99945 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 1.2494 5 7 3.5053 -0.8282 1.1690 6 6 4.2819 -0.3853 2.1775 7 8 3.7819 0.1935 3.1187 8 6 5.7716 -0.6091 2.1358 9 6 6.2912 -0.8495 3.5546 10 6 7.8037 -1.0761 3.5122 11 6 8.4879 0.1579 2.9207 12 6 7.9683 0.3982 1.5019 13 6 6.4559 0.6248 1.5442 14 6 4.1060 -1.4255 -0.0316 15 6 3.5708 -0.6936 -1.2664 16 6 2.0408 -0.7227 -1.2485 17 1 1.6974 -1.7571 -1.2353 18 7 1.5259 -0.0527 -2.4452 19 6 1.3952 -0.7491 -3.6171 20 1 1.6721 -1.7921 -3.6591 21 6 0.9068 -0.1143 -4.7508 22 7 0.5689 1.1567 -4.6995 23 14 0.7293 -1.0642 -6.3495 24 1 0.1897 -0.1658 -7.4017 25 1 2.0574 -1.5781 -6.7702 26 1 -0.2011 -2.2038 -6.1476 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5148 0.8895 29 1 -0.3633 0.5128 -0.8905 30 1 1.7644 -0.1580 2.1389 31 1 1.6064 -1.7217 1.2979 32 1 5.9911 -1.4787 1.5163 33 1 6.0717 0.0201 4.1741 34 1 5.8033 -1.7284 3.9761 35 1 8.0236 -1.9455 2.8926 36 1 8.1738 -1.2478 4.5230 37 1 9.5655 -0.0038 2.8901 38 1 8.2680 1.0273 3.5404 39 1 8.1882 -0.4713 0.8823 40 1 8.4561 1.2771 1.0803 41 1 6.0857 0.7965 0.5335 42 1 6.2360 1.4943 2.1638 43 1 5.1902 -1.3229 0.0127 44 1 3.8407 -2.4813 -0.0862 45 1 3.9336 -1.1878 -2.1676 46 1 3.9152 0.3405 -1.2543 47 1 1.2774 0.8842 -2.4076 48 1 0.2279 1.6003 -5.4919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035895595.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:11 Heat of formation + Delta-G solvation = -55.641239 kcal Electronic energy + Delta-G solvation = -25008.009800 eV Core-core repulsion = 21675.536759 eV Total energy + Delta-G solvation = -3332.473041 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.49242 -38.36689 -37.15761 -34.60111 -32.94226 -31.51299 -31.09583 -30.94043 -29.28737 -26.53756 -25.08628 -23.42812 -22.78338 -22.55203 -21.63595 -20.27101 -19.65622 -18.65468 -17.13692 -17.01151 -16.11681 -15.23497 -14.95220 -14.90501 -14.32290 -14.22012 -14.20769 -13.78797 -13.74257 -13.31377 -13.04463 -12.83422 -12.51104 -12.40150 -12.38144 -12.09623 -11.76819 -11.56704 -11.40764 -11.26523 -11.15867 -10.93456 -10.85360 -10.79185 -10.66273 -10.53198 -10.37777 -10.29270 -10.23838 -9.75385 -9.61920 -9.44539 -8.90585 -8.42313 -6.97646 -5.78653 -3.07408 2.72532 3.13590 3.41532 3.46383 3.47344 4.39700 4.49598 4.55719 4.57328 4.87699 4.95845 5.04691 5.07630 5.22918 5.25469 5.29775 5.31139 5.33824 5.38980 5.42525 5.52738 5.59223 5.65925 5.69615 5.79279 5.82350 5.88727 5.90514 5.98121 6.00656 6.02022 6.08976 6.09922 6.17687 6.25418 6.30948 6.40413 6.44105 6.55443 6.65839 6.81513 6.93225 7.05701 7.57679 7.66695 8.30751 8.39619 9.50904 10.08631 10.43539 11.43785 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.022175 B = 0.003639 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.365042 B = 7692.152404 C = 8446.180387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.606 5.606 6 C 0.518 3.482 7 O -0.550 6.550 8 C -0.106 4.106 9 C -0.102 4.102 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.117 4.117 13 C -0.109 4.109 14 C 0.105 3.895 15 C -0.151 4.151 16 C 0.184 3.816 17 H 0.047 0.953 18 N -0.720 5.720 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.292 1.292 25 H -0.286 1.286 26 H -0.286 1.286 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.153 -4.765 14.851 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.004 4.004 5 N -0.339 5.339 6 C 0.307 3.693 7 O -0.428 6.428 8 C -0.127 4.127 9 C -0.140 4.140 10 C -0.156 4.156 11 C -0.159 4.159 12 C -0.154 4.154 13 C -0.147 4.147 14 C -0.018 4.018 15 C -0.192 4.192 16 C 0.074 3.926 17 H 0.065 0.935 18 N -0.361 5.361 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.844 -4.577 15.181 20.406 hybrid contribution -0.190 -0.226 -1.170 1.207 sum 12.654 -4.803 14.011 19.481 Atomic orbital electron populations 1.21657 0.94187 1.01712 1.01819 1.21731 0.96528 1.00032 0.94653 0.91325 1.21696 0.78729 1.00622 0.99330 1.48201 1.07078 1.60429 1.18157 1.20641 0.89007 0.77900 0.81787 1.90648 1.75564 1.41909 1.34700 1.21368 0.91453 1.00567 0.99331 1.21392 0.95115 1.02629 0.94838 1.21538 0.94965 0.98137 1.00916 1.21562 0.99449 0.98369 0.96493 1.21521 0.95006 1.01929 0.96988 1.21472 0.95144 0.96685 1.01354 1.21915 0.97816 0.97308 0.84798 1.22678 1.00394 1.00372 0.95763 1.20187 0.90349 0.95657 0.86432 0.93478 1.42404 1.76476 1.11428 1.05764 1.19172 1.35999 0.94093 0.87755 0.91303 1.24726 1.02042 0.96013 0.98037 1.69649 1.49883 1.09516 1.29011 0.86302 0.77730 0.78723 0.83611 1.21754 1.21324 1.21311 0.93093 0.93852 0.90780 0.89484 0.91735 0.89110 0.90735 0.91929 0.91955 0.91809 0.92059 0.91878 0.91751 0.91599 0.91221 0.91185 0.90271 0.91625 0.90604 0.92208 0.78222 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.03 37.15 0.34 -1.91 16 2 C -0.11 -1.83 2.46 -90.50 -0.22 -2.05 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 4 C 0.12 1.77 5.73 -3.71 -0.02 1.75 16 5 N -0.61 -8.62 2.97 -172.76 -0.51 -9.14 16 6 C 0.52 7.53 6.69 -10.99 -0.07 7.46 16 7 O -0.55 -9.78 15.68 5.56 0.09 -9.69 16 8 C -0.11 -1.17 1.72 -91.77 -0.16 -1.32 16 9 C -0.10 -1.03 4.86 -26.73 -0.13 -1.16 16 10 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 11 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 12 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 13 C -0.11 -1.14 5.10 -26.73 -0.14 -1.27 16 14 C 0.10 1.35 6.15 -3.71 -0.02 1.33 16 15 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 16 C 0.18 3.47 2.19 -67.89 -0.15 3.32 16 17 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 18 N -0.72 -17.22 4.41 -53.39 -0.24 -17.46 16 19 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 23 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.43 7.36 -51.93 -0.38 1.05 16 30 H 0.09 1.37 7.00 -51.93 -0.36 1.00 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.88 6.19 -51.93 -0.32 0.55 16 33 H 0.07 0.86 7.86 -51.93 -0.41 0.46 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.85 5.43 -51.93 -0.28 0.57 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.38 9.95 7.50 -40.82 -0.31 9.64 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -30.27 365.47 -9.69 -39.96 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -8.79 Total: 7.60 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.45 Total: -6.78 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.02 Total: -53.48 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.27 -9.69 -39.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035895595.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.683 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds