Wall clock time and date at job start Fri Apr 10 2020 20:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.49476 * 2 1 4 4 C 1.53187 * 109.49669 * 239.90913 * 2 1 3 5 5 N 1.46932 * 108.77765 * 185.40881 * 4 2 1 6 6 C 1.34775 * 120.63538 * 233.63084 * 5 4 2 7 7 O 1.21288 * 119.99813 * 355.30189 * 6 5 4 8 8 C 1.50693 * 120.00402 * 175.30240 * 6 5 4 9 9 C 1.52999 * 109.47055 * 275.33252 * 8 6 5 10 10 C 1.53000 * 109.47056 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47123 * 59.99456 * 10 9 8 12 12 C 1.52995 * 109.47426 * 299.99904 * 11 10 9 13 13 C 1.52997 * 109.47492 * 155.32600 * 8 6 5 14 14 C 1.46997 * 118.75165 * 53.60892 * 5 4 2 15 15 C 1.53196 * 108.73815 * 306.41008 * 14 5 4 16 16 C 1.53041 * 109.50048 * 120.07074 * 2 1 3 17 17 H 1.08999 * 109.45805 * 301.33596 * 16 2 1 18 18 N 1.46496 * 109.44722 * 61.30288 * 16 2 1 19 19 C 1.36942 * 119.99716 * 205.06272 * 18 16 2 20 20 H 1.08005 * 120.00009 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00073 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99603 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00275 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46853 * 59.99790 * 23 21 19 25 25 H 1.48500 * 109.47110 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46864 * 300.00217 * 23 21 19 27 27 H 1.08999 * 109.46667 * 299.92979 * 1 2 3 28 28 H 1.08999 * 109.47090 * 59.93360 * 1 2 3 29 29 H 1.09004 * 109.46561 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.59096 * 305.20142 * 4 2 1 31 31 H 1.09006 * 109.59124 * 65.48117 * 4 2 1 32 32 H 1.09006 * 109.46655 * 35.32377 * 8 6 5 33 33 H 1.09006 * 109.46675 * 299.99113 * 9 8 6 34 34 H 1.08999 * 109.47512 * 59.99412 * 9 8 6 35 35 H 1.08994 * 109.47235 * 299.99609 * 10 9 8 36 36 H 1.08997 * 109.47113 * 179.97438 * 10 9 8 37 37 H 1.09008 * 109.46758 * 180.02562 * 11 10 9 38 38 H 1.08999 * 109.47363 * 60.00560 * 11 10 9 39 39 H 1.09006 * 109.47012 * 300.00649 * 12 11 10 40 40 H 1.08999 * 109.47340 * 180.02562 * 12 11 10 41 41 H 1.09005 * 109.46958 * 300.00123 * 13 8 6 42 42 H 1.09001 * 109.46930 * 59.99616 * 13 8 6 43 43 H 1.08993 * 109.63189 * 186.62213 * 14 5 4 44 44 H 1.08997 * 109.58157 * 66.16650 * 14 5 4 45 45 H 1.09003 * 109.49753 * 294.65619 * 15 14 5 46 46 H 1.09001 * 109.49497 * 174.58936 * 15 14 5 47 47 H 0.96992 * 120.00388 * 25.06311 * 18 16 2 48 48 H 0.97004 * 119.99712 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7240 -1.2494 5 7 3.5047 -0.8292 -1.1695 6 6 4.2812 -0.3859 -2.1779 7 8 3.7725 0.0270 -3.1986 8 6 5.7815 -0.4032 -2.0374 9 6 6.2405 0.8636 -1.3127 10 6 7.7636 0.8458 -1.1694 11 6 8.4058 0.7909 -2.5571 12 6 7.9468 -0.4760 -3.2817 13 6 6.4232 -0.4578 -3.4252 14 6 4.1061 -1.4268 0.0313 15 6 3.5710 -0.6947 1.2661 16 6 2.0409 -0.7229 1.2485 17 1 1.6583 -0.2241 2.1389 18 7 1.5785 -2.1128 1.2308 19 6 1.4470 -2.8056 2.4047 20 1 1.6847 -2.3273 3.3435 21 6 1.0093 -4.1228 2.3881 22 7 0.7212 -4.7060 1.2439 23 14 0.8307 -5.0680 3.9893 24 1 -0.1478 -4.3759 4.8661 25 1 0.3503 -6.4433 3.7012 26 1 2.1470 -5.1359 4.6735 27 1 -0.3632 0.5127 0.8906 28 1 -0.3633 0.5149 -0.8894 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6053 -1.7218 -1.2977 31 1 1.7616 -0.1596 -2.1391 32 1 6.0825 -1.2795 -1.4631 33 1 5.9395 1.7399 -1.8869 34 1 5.7833 0.9026 -0.3240 35 1 8.0643 -0.0304 -0.5951 36 1 8.0907 1.7485 -0.6536 37 1 9.4910 0.7777 -2.4550 38 1 8.1052 1.6671 -3.1315 39 1 8.2474 -1.3523 -2.7072 40 1 8.4047 -0.5154 -4.2701 41 1 6.0962 -1.3605 -3.9414 42 1 6.1221 0.4184 -3.9994 43 1 5.1903 -1.3247 -0.0126 44 1 3.8383 -2.4819 0.0876 45 1 3.9160 0.3392 1.2539 46 1 3.9336 -1.1887 2.1675 47 1 1.3654 -2.5424 0.3877 48 1 0.4150 -5.6263 1.2322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035895601.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:15 Heat of formation + Delta-G solvation = -53.200387 kcal Electronic energy + Delta-G solvation = -25452.005468 eV Core-core repulsion = 22119.638271 eV Total energy + Delta-G solvation = -3332.367197 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.38255 -38.36880 -37.10542 -34.24663 -32.89872 -31.43748 -30.99799 -30.84583 -29.15735 -26.40504 -25.06647 -23.51965 -22.99814 -22.66332 -21.63681 -20.17547 -19.21984 -18.04207 -17.37294 -16.80514 -15.99221 -15.17950 -14.91504 -14.57288 -14.35069 -14.22338 -14.09708 -13.92478 -13.69973 -13.29323 -12.88098 -12.72809 -12.50762 -12.32072 -12.24777 -12.19566 -11.54802 -11.41568 -11.29054 -11.20821 -11.13241 -10.90346 -10.80988 -10.72452 -10.56454 -10.47947 -10.32329 -10.23183 -10.20357 -9.83480 -9.55037 -9.29240 -8.92442 -8.16353 -6.98270 -5.79595 -3.08100 2.89315 3.33529 3.41058 3.46369 3.47127 4.52205 4.56689 4.58158 4.64116 4.98406 5.05943 5.12771 5.20484 5.29448 5.35559 5.36750 5.38456 5.41964 5.49955 5.56070 5.60340 5.67570 5.75807 5.84172 5.88755 5.92293 5.95128 5.98532 6.06465 6.08242 6.10930 6.11761 6.19512 6.27644 6.32908 6.34652 6.43723 6.51598 6.66626 6.69967 6.77841 6.94568 7.03547 7.67137 7.79848 8.38915 8.48205 9.50424 10.07487 10.42604 11.42701 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.019911 B = 0.004138 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.934916 B = 6764.412533 C = 7290.413578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.119 3.881 5 N -0.600 5.600 6 C 0.516 3.484 7 O -0.556 6.556 8 C -0.106 4.106 9 C -0.107 4.107 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.119 4.119 13 C -0.101 4.101 14 C 0.112 3.888 15 C -0.149 4.149 16 C 0.179 3.821 17 H 0.050 0.950 18 N -0.718 5.718 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.610 10.898 -5.472 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.082 0.918 4 C -0.004 4.004 5 N -0.332 5.332 6 C 0.304 3.696 7 O -0.434 6.434 8 C -0.128 4.128 9 C -0.144 4.144 10 C -0.154 4.154 11 C -0.158 4.158 12 C -0.157 4.157 13 C -0.139 4.139 14 C -0.011 4.011 15 C -0.190 4.190 16 C 0.068 3.932 17 H 0.068 0.932 18 N -0.361 5.361 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.303 11.020 -5.833 17.516 hybrid contribution -0.201 -0.869 0.826 1.215 sum 12.101 10.151 -5.007 16.570 Atomic orbital electron populations 1.21668 0.94295 1.03171 1.00372 1.21697 0.96447 0.98762 0.95863 0.91760 1.21614 0.78924 1.01456 0.98373 1.48156 1.06991 1.59667 1.18363 1.20593 0.89198 0.76988 0.82797 1.90636 1.75677 1.48295 1.28836 1.21347 0.91798 1.00567 0.99050 1.21460 0.96006 0.96536 1.00445 1.21523 0.94730 1.02061 0.97125 1.21557 0.99687 0.98303 0.96263 1.21560 0.95601 0.98083 1.00416 1.21377 0.94274 1.03121 0.95084 1.21793 0.96570 0.98927 0.83766 1.22524 1.00474 0.98544 0.97480 1.20207 0.90799 0.87362 0.94796 0.93214 1.42469 1.78989 1.07709 1.06910 1.19176 1.37357 0.93891 0.86557 0.91333 1.24697 1.02262 0.97165 0.96564 1.69642 1.51628 1.13090 1.23690 0.86317 0.77741 0.79231 0.83153 1.21381 1.21806 1.21374 0.92856 0.93809 0.91046 0.90818 0.89996 0.88972 0.91460 0.91261 0.91717 0.91762 0.92135 0.91968 0.91929 0.91861 0.91775 0.90905 0.90964 0.89824 0.93371 0.90836 0.78084 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.05 37.16 0.34 -1.90 16 2 C -0.11 -1.78 2.67 -90.50 -0.24 -2.02 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 2.06 5.40 -3.71 -0.02 2.04 16 5 N -0.60 -9.81 2.97 -172.71 -0.51 -10.32 16 6 C 0.52 8.34 6.80 -10.99 -0.07 8.26 16 7 O -0.56 -10.67 15.53 5.55 0.09 -10.58 16 8 C -0.11 -1.32 1.69 -91.78 -0.16 -1.47 16 9 C -0.11 -1.15 5.07 -26.73 -0.14 -1.28 16 10 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 11 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 12 C -0.12 -1.08 5.92 -26.71 -0.16 -1.24 16 13 C -0.10 -1.17 4.73 -26.71 -0.13 -1.30 16 14 C 0.11 1.76 5.98 -3.67 -0.02 1.74 16 15 C -0.15 -2.41 5.78 -26.61 -0.15 -2.57 16 16 C 0.18 3.31 2.53 -67.89 -0.17 3.14 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 N -0.72 -16.44 3.64 -53.38 -0.19 -16.63 16 19 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 20 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 23 Si 0.90 21.67 29.55 -169.99 -5.02 16.64 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.35 7.54 -51.93 -0.39 0.95 16 30 H 0.07 1.42 6.64 -51.93 -0.34 1.08 16 31 H 0.08 1.44 7.04 -51.93 -0.37 1.07 16 32 H 0.09 1.08 6.29 -51.93 -0.33 0.75 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.76 7.90 -51.93 -0.41 0.35 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 43 H 0.07 0.94 5.20 -51.93 -0.27 0.67 16 44 H 0.08 1.57 7.74 -51.93 -0.40 1.17 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.38 9.48 5.92 -40.82 -0.24 9.24 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -29.19 361.19 -9.58 -38.78 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -8.62 Total: 8.63 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -1.48 Total: -5.67 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.02 Total: -53.24 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.19 -9.58 -38.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035895601.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.424 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds