Wall clock time and date at job start Fri Apr 10 2020 20:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.52910 * 2 1 4 4 C 1.53191 * 109.49980 * 239.91605 * 2 1 3 5 5 N 1.46928 * 108.78069 * 185.41176 * 4 2 1 6 6 C 1.34776 * 120.63420 * 233.59177 * 5 4 2 7 7 O 1.21280 * 119.99897 * 5.41272 * 6 5 4 8 8 C 1.50697 * 119.99902 * 185.42118 * 6 5 4 9 9 C 1.53000 * 109.47049 * 265.31450 * 8 6 5 10 10 C 1.52997 * 109.47451 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47100 * 59.99809 * 10 9 8 12 12 C 1.53004 * 109.47107 * 299.99856 * 11 10 9 13 13 C 1.52999 * 109.47131 * 145.31486 * 8 6 5 14 14 C 1.46926 * 118.73471 * 53.86391 * 5 4 2 15 15 C 1.53636 * 108.54299 * 306.09507 * 14 5 4 16 16 C 1.53038 * 109.24076 * 54.85425 * 15 14 5 17 17 H 1.09004 * 109.45949 * 58.53563 * 16 15 14 18 18 N 1.46496 * 109.45803 * 178.48869 * 16 15 14 19 19 C 1.36936 * 120.00653 * 275.07067 * 18 16 15 20 20 H 1.08001 * 119.99506 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00413 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99936 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99886 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47345 * 90.00374 * 23 21 19 25 25 H 1.48502 * 109.47331 * 210.00228 * 23 21 19 26 26 H 1.48503 * 109.47393 * 330.00106 * 23 21 19 27 27 H 1.08999 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46947 * 300.08063 * 1 2 3 29 29 H 1.09005 * 109.47184 * 60.08038 * 1 2 3 30 30 H 1.09000 * 109.58532 * 65.62933 * 4 2 1 31 31 H 1.08999 * 109.70646 * 305.27261 * 4 2 1 32 32 H 1.09002 * 109.47130 * 25.30873 * 8 6 5 33 33 H 1.09001 * 109.47490 * 59.99752 * 9 8 6 34 34 H 1.09004 * 109.47120 * 300.00323 * 9 8 6 35 35 H 1.09004 * 109.47052 * 300.00157 * 10 9 8 36 36 H 1.09001 * 109.47574 * 179.97438 * 10 9 8 37 37 H 1.08993 * 109.47517 * 59.99999 * 11 10 9 38 38 H 1.09000 * 109.47229 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.47253 * 179.97438 * 12 11 10 40 40 H 1.08992 * 109.47562 * 300.00325 * 12 11 10 41 41 H 1.09001 * 109.47209 * 299.99485 * 13 8 6 42 42 H 1.08992 * 109.47175 * 59.99945 * 13 8 6 43 43 H 1.09002 * 109.58872 * 65.92256 * 14 5 4 44 44 H 1.08996 * 109.58516 * 186.35549 * 14 5 4 45 45 H 1.08999 * 109.62998 * 294.86299 * 15 14 5 46 46 H 1.08998 * 109.45634 * 174.74289 * 15 14 5 47 47 H 0.97006 * 119.99983 * 95.07018 * 18 16 15 48 48 H 0.97001 * 119.99881 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8292 -1.1696 6 6 4.2811 -0.3864 -2.1783 7 8 3.7811 0.1927 -3.1192 8 6 5.7707 -0.6112 -2.1370 9 6 6.4563 0.6218 -1.5450 10 6 7.9686 0.3940 -1.5037 11 6 8.4872 0.1542 -2.9230 12 6 7.8017 -1.0790 -3.5149 13 6 6.2897 -0.8514 -3.5561 14 6 4.1050 -1.4319 0.0283 15 6 3.5708 -0.6950 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 1.6966 -1.7573 1.2353 18 7 1.5265 -0.0530 2.4453 19 6 1.3964 -0.7492 3.6173 20 1 1.6725 -1.7925 3.6591 21 6 0.9096 -0.1141 4.7515 22 7 0.5726 1.1572 4.7004 23 14 0.7314 -1.0641 6.3499 24 1 1.9889 -0.9566 7.1325 25 1 -0.3924 -0.4989 7.1391 26 1 0.4561 -2.4920 6.0491 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5151 0.8893 29 1 -0.3634 0.5126 -0.8907 30 1 1.7638 -0.1580 -2.1388 31 1 1.6054 -1.7216 -1.3005 32 1 5.9898 -1.4811 -1.5178 33 1 6.0865 0.7930 -0.5341 34 1 6.2371 1.4918 -2.1641 35 1 8.1882 -0.4761 -0.8848 36 1 8.4571 1.2726 -1.0824 37 1 8.2677 1.0241 -3.5419 38 1 9.5646 -0.0086 -2.8935 39 1 8.1708 -1.2496 -4.5262 40 1 8.0212 -1.9489 -2.8960 41 1 5.8013 -1.7299 -3.9778 42 1 6.0706 0.0185 -4.1751 43 1 3.8338 -2.4862 0.0820 44 1 5.1896 -1.3332 -0.0175 45 1 3.9159 0.3388 1.2541 46 1 3.9334 -1.1892 2.1674 47 1 1.2782 0.8840 2.4077 48 1 0.2321 1.6009 5.4930 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035895606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:20 Heat of formation + Delta-G solvation = -55.672985 kcal Electronic energy + Delta-G solvation = -25006.923010 eV Core-core repulsion = 21674.448592 eV Total energy + Delta-G solvation = -3332.474417 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.48953 -38.36272 -37.15588 -34.60169 -32.94168 -31.50380 -31.09119 -30.94310 -29.27676 -26.53808 -25.08664 -23.43041 -22.78315 -22.55889 -21.63648 -20.27017 -19.65487 -18.65689 -17.13779 -17.01330 -16.11743 -15.23511 -14.95156 -14.90620 -14.32464 -14.22128 -14.20469 -13.78374 -13.73825 -13.31540 -13.04234 -12.83429 -12.51457 -12.40182 -12.38417 -12.09876 -11.76804 -11.56067 -11.40731 -11.26494 -11.15839 -10.94975 -10.85359 -10.79136 -10.67047 -10.53427 -10.38274 -10.29219 -10.20778 -9.75579 -9.62027 -9.44630 -8.91098 -8.42209 -6.97678 -5.78919 -3.07600 2.72549 3.13555 3.40966 3.46428 3.48124 4.39728 4.49588 4.55599 4.57210 4.87640 4.95780 5.04748 5.07732 5.22686 5.25472 5.29791 5.31131 5.33829 5.38185 5.42485 5.52757 5.59010 5.65561 5.69389 5.79070 5.82287 5.88720 5.90479 5.98090 6.00648 6.01984 6.08904 6.09953 6.17533 6.25398 6.30657 6.40380 6.44045 6.55298 6.65866 6.81382 6.93036 7.05641 7.57625 7.67050 8.30728 8.39357 9.50723 10.08464 10.43332 11.43598 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.003639 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.832954 B = 7692.108268 C = 8446.202121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.606 5.606 6 C 0.518 3.482 7 O -0.550 6.550 8 C -0.106 4.106 9 C -0.109 4.109 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.118 4.118 13 C -0.102 4.102 14 C 0.104 3.896 15 C -0.150 4.150 16 C 0.184 3.816 17 H 0.047 0.953 18 N -0.721 5.721 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.136 -4.810 -14.891 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.004 4.004 5 N -0.339 5.339 6 C 0.307 3.693 7 O -0.428 6.428 8 C -0.127 4.127 9 C -0.147 4.147 10 C -0.154 4.154 11 C -0.159 4.159 12 C -0.156 4.156 13 C -0.140 4.140 14 C -0.019 4.019 15 C -0.192 4.192 16 C 0.074 3.926 17 H 0.065 0.935 18 N -0.361 5.361 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.821 -4.630 -15.227 20.437 hybrid contribution -0.184 -0.213 1.173 1.206 sum 12.637 -4.843 -14.054 19.511 Atomic orbital electron populations 1.21657 0.94190 1.01717 1.01805 1.21726 0.96521 1.00028 0.94639 0.91314 1.21691 0.78729 1.00623 0.99331 1.48204 1.07089 1.60294 1.18285 1.20641 0.89005 0.77926 0.81767 1.90648 1.75558 1.41920 1.34697 1.21368 0.91456 1.00576 0.99324 1.21474 0.95136 0.96692 1.01353 1.21522 0.95011 1.01924 0.96986 1.21562 0.99450 0.98375 0.96491 1.21532 0.94967 0.98146 1.00913 1.21383 0.95127 1.02629 0.94837 1.22012 0.97819 0.97229 0.84830 1.22756 1.00357 1.00325 0.95725 1.20189 0.90364 0.95655 0.86427 0.93482 1.42412 1.76485 1.11441 1.05750 1.19214 1.35915 0.94093 0.87699 0.91254 1.24727 1.02076 0.96023 0.98041 1.69661 1.49992 1.09516 1.28866 0.86225 0.77267 0.78904 0.83990 1.21791 1.21837 1.20798 0.93091 0.90779 0.93863 0.89502 0.91745 0.89109 0.91214 0.91188 0.91747 0.91598 0.91880 0.92058 0.91808 0.91952 0.91934 0.90737 0.91594 0.90235 0.92193 0.90640 0.78226 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.02 37.15 0.34 -1.91 16 2 C -0.11 -1.83 2.46 -90.50 -0.22 -2.05 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 4 C 0.12 1.77 5.72 -3.71 -0.02 1.75 16 5 N -0.61 -8.62 2.97 -172.50 -0.51 -9.13 16 6 C 0.52 7.52 6.69 -10.99 -0.07 7.45 16 7 O -0.55 -9.78 15.68 5.56 0.09 -9.69 16 8 C -0.11 -1.17 1.73 -91.77 -0.16 -1.32 16 9 C -0.11 -1.14 5.10 -26.73 -0.14 -1.27 16 10 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 11 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 12 C -0.12 -0.93 5.92 -26.75 -0.16 -1.09 16 13 C -0.10 -1.03 4.86 -26.75 -0.13 -1.16 16 14 C 0.10 1.34 6.18 -3.48 -0.02 1.32 16 15 C -0.15 -2.47 5.67 -26.38 -0.15 -2.62 16 16 C 0.18 3.46 2.19 -67.89 -0.15 3.31 16 17 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 18 N -0.72 -17.22 4.41 -53.39 -0.24 -17.45 16 19 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 23 Si 0.90 21.92 29.55 -169.99 -5.02 16.90 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.43 7.36 -51.93 -0.38 1.05 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.88 6.18 -51.93 -0.32 0.55 16 33 H 0.07 0.77 8.03 -51.93 -0.42 0.36 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.86 7.85 -51.93 -0.41 0.46 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.85 5.44 -51.93 -0.28 0.57 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.38 9.94 7.50 -40.82 -0.31 9.64 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -30.30 365.53 -9.68 -39.98 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.79 Total: 7.53 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.45 Total: -6.76 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.02 Total: -53.46 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.30 -9.68 -39.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035895606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.693 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds