Wall clock time and date at job start Fri Apr 10 2020 20:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.51787 * 2 1 4 4 C 1.53626 * 109.43202 * 120.20366 * 2 1 3 5 5 N 1.46927 * 108.53890 * 174.72784 * 4 2 1 6 6 C 1.34784 * 120.62699 * 126.37035 * 5 4 2 7 7 O 1.21274 * 119.99897 * 359.44593 * 6 5 4 8 8 C 1.50695 * 119.99635 * 179.71634 * 6 5 4 9 9 C 1.53002 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.54266 * 110.03440 * 292.16798 * 9 8 6 11 11 C 1.54879 * 104.19821 * 217.10151 * 10 9 8 12 12 C 1.54892 * 102.74903 * 37.94158 * 11 10 9 13 13 C 1.53875 * 110.03452 * 175.00017 * 9 8 6 14 14 C 1.46923 * 118.74026 * 306.09376 * 5 4 2 15 15 C 1.53188 * 108.77648 * 53.86164 * 14 5 4 16 16 C 1.53034 * 109.50037 * 239.91841 * 2 1 3 17 17 H 1.09001 * 109.46295 * 298.70256 * 16 2 1 18 18 N 1.46507 * 109.46118 * 58.65881 * 16 2 1 19 19 C 1.36937 * 119.99858 * 205.06669 * 18 16 2 20 20 H 1.07994 * 120.00451 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99440 * 179.97438 * 19 18 16 22 22 N 1.31614 * 120.00677 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99603 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47478 * 59.99994 * 23 21 19 25 25 H 1.48499 * 109.47058 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47142 * 299.99723 * 23 21 19 27 27 H 1.09003 * 109.46625 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47451 * 300.07756 * 1 2 3 29 29 H 1.09001 * 109.47337 * 60.09044 * 1 2 3 30 30 H 1.09001 * 109.73828 * 54.99434 * 4 2 1 31 31 H 1.08993 * 109.66154 * 294.41870 * 4 2 1 32 32 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 33 33 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 34 34 H 1.09002 * 110.01644 * 53.60916 * 9 8 6 35 35 H 1.09000 * 110.48397 * 335.78345 * 10 9 8 36 36 H 1.09002 * 110.48659 * 98.42309 * 10 9 8 37 37 H 1.08998 * 110.76161 * 279.62766 * 11 10 9 38 38 H 1.09007 * 110.91676 * 156.32779 * 11 10 9 39 39 H 1.09000 * 110.49235 * 203.37683 * 12 11 10 40 40 H 1.09005 * 110.59610 * 80.79149 * 12 11 10 41 41 H 1.09003 * 110.03235 * 238.56950 * 13 9 8 42 42 H 1.09000 * 110.02916 * 0.02562 * 13 9 8 43 43 H 1.09000 * 109.58464 * 173.65079 * 14 5 4 44 44 H 1.08999 * 109.58796 * 293.93290 * 14 5 4 45 45 H 1.09005 * 109.49574 * 65.31581 * 15 14 5 46 46 H 1.08998 * 109.49705 * 185.40991 * 15 14 5 47 47 H 0.96993 * 119.99825 * 25.07183 * 18 16 2 48 48 H 0.96996 * 120.00184 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0411 -0.7288 1.2521 5 7 3.5046 -0.8289 1.1696 6 6 4.2811 -0.3861 2.1784 7 8 3.7733 0.1097 3.1617 8 6 5.7805 -0.5016 2.0815 9 6 6.4190 0.0710 3.3486 10 6 6.1992 1.5968 3.4081 11 6 7.5149 2.1468 4.0122 12 6 8.5930 1.2444 3.3622 13 6 7.9411 -0.1530 3.3194 14 6 4.1053 -1.4265 -0.0307 15 6 3.5709 -0.6949 -1.2660 16 6 2.0408 -0.7231 -1.2483 17 1 1.6968 -1.7573 -1.2352 18 7 1.5265 -0.0530 -2.4453 19 6 1.3952 -0.7497 -3.6168 20 1 1.6704 -1.7932 -3.6584 21 6 0.9074 -0.1149 -4.7508 22 7 0.5715 1.1566 -4.7002 23 14 0.7276 -1.0655 -6.3488 24 1 -0.2046 -2.2035 -6.1457 25 1 0.1902 -0.1667 -7.4017 26 1 2.0548 -1.5818 -6.7697 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5150 0.8893 29 1 -0.3634 0.5124 -0.8908 30 1 1.6085 -1.7283 1.2986 31 1 1.7630 -0.1661 2.1431 32 1 6.0582 -1.5504 1.9764 33 1 6.1327 0.0563 1.2138 34 1 5.9886 -0.4036 4.2305 35 1 6.0416 1.9987 2.4072 36 1 5.3540 1.8356 4.0536 37 1 7.5192 2.0339 5.0963 38 1 7.6650 3.1899 3.7334 39 1 9.4949 1.2261 3.9741 40 1 8.8242 1.5886 2.3541 41 1 8.2494 -0.7356 4.1876 42 1 8.2249 -0.6692 2.4024 43 1 5.1896 -1.3243 0.0138 44 1 3.8398 -2.4822 -0.0853 45 1 3.9159 0.3390 -1.2541 46 1 3.9335 -1.1896 -2.1670 47 1 1.2791 0.8841 -2.4080 48 1 0.2310 1.6003 -5.4927 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035915143.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:35 Heat of formation + Delta-G solvation = -52.972023 kcal Electronic energy + Delta-G solvation = -24628.092800 eV Core-core repulsion = 21295.735505 eV Total energy + Delta-G solvation = -3332.357295 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 5.60 seconds Orbital eigenvalues (eV) -40.26288 -38.43814 -37.24959 -34.58591 -32.96153 -31.62873 -31.31932 -29.30810 -28.78130 -27.08188 -25.50611 -24.50184 -22.73958 -21.65092 -20.84772 -20.16336 -19.52006 -18.78475 -17.11974 -16.96394 -16.17502 -15.57264 -15.20728 -14.89924 -14.87258 -14.09481 -13.77812 -13.73548 -13.49534 -13.43995 -13.29895 -12.74031 -12.48960 -12.34304 -12.02086 -11.73577 -11.55920 -11.37262 -11.25309 -11.12867 -11.06951 -10.93617 -10.85249 -10.79999 -10.71898 -10.62660 -10.51858 -10.39093 -10.24167 -9.76129 -9.62689 -9.54834 -8.91244 -8.41839 -6.98067 -5.78968 -3.07733 2.76611 3.15559 3.41283 3.46125 3.47113 4.38597 4.47295 4.55575 4.56863 4.75556 5.04190 5.07720 5.16353 5.27198 5.29198 5.32424 5.38178 5.42175 5.51062 5.52331 5.54722 5.63178 5.65902 5.68360 5.69963 5.76798 5.81167 5.90128 5.97014 5.98944 6.09293 6.15041 6.17066 6.24183 6.30515 6.37361 6.40244 6.43695 6.54986 6.65520 6.81244 6.92959 7.05348 7.58412 7.66401 8.32306 8.39311 9.50597 10.08301 10.43199 11.43483 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.023247 B = 0.003256 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.192516 B = 8598.646844 C = 9072.600370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.120 3.880 5 N -0.609 5.609 6 C 0.513 3.487 7 O -0.548 6.548 8 C -0.134 4.134 9 C -0.076 4.076 10 C -0.113 4.113 11 C -0.127 4.127 12 C -0.125 4.125 13 C -0.122 4.122 14 C 0.107 3.893 15 C -0.152 4.152 16 C 0.184 3.816 17 H 0.047 0.953 18 N -0.721 5.721 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.849 -3.254 15.774 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.003 4.003 5 N -0.342 5.342 6 C 0.301 3.699 7 O -0.426 6.426 8 C -0.174 4.174 9 C -0.095 4.095 10 C -0.151 4.151 11 C -0.165 4.165 12 C -0.163 4.163 13 C -0.160 4.160 14 C -0.016 4.016 15 C -0.193 4.193 16 C 0.074 3.926 17 H 0.065 0.935 18 N -0.361 5.361 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.545 -3.114 16.123 20.665 hybrid contribution -0.139 -0.262 -1.219 1.254 sum 12.405 -3.376 14.905 19.684 Atomic orbital electron populations 1.21660 0.94222 1.01712 1.01806 1.21812 0.96503 0.99964 0.94635 0.91319 1.21769 0.78733 1.00576 0.99227 1.48213 1.07135 1.60612 1.18204 1.20668 0.89454 0.77390 0.82345 1.90647 1.75672 1.44807 1.31466 1.21883 0.92110 1.03049 1.00340 1.21536 0.94294 0.96644 0.97003 1.22382 0.97389 0.94105 1.01210 1.22524 0.95167 0.98872 0.99926 1.22357 0.97897 0.95234 1.00764 1.22239 0.94597 0.97327 1.01801 1.21858 0.97628 0.97290 0.84859 1.22682 1.00417 1.00378 0.95828 1.20187 0.90348 0.95661 0.86434 0.93489 1.42404 1.76519 1.11385 1.05775 1.19169 1.36031 0.94051 0.87760 0.91304 1.24726 1.02049 0.96012 0.98046 1.69643 1.49925 1.09480 1.29013 0.86302 0.77737 0.78725 0.83603 1.21309 1.21751 1.21325 0.93098 0.93850 0.90796 0.91798 0.89461 0.89204 0.88857 0.90381 0.91999 0.90842 0.91739 0.91822 0.92018 0.91691 0.91842 0.91663 0.90507 0.91591 0.92225 0.90626 0.78230 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.03 37.16 0.34 -1.91 16 2 C -0.11 -1.81 2.47 -90.28 -0.22 -2.03 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.12 1.76 5.75 -3.48 -0.02 1.74 16 5 N -0.61 -8.47 2.97 -172.51 -0.51 -8.98 16 6 C 0.51 7.17 7.49 -10.98 -0.08 7.09 16 7 O -0.55 -9.26 14.23 5.56 0.08 -9.18 16 8 C -0.13 -1.39 3.18 -27.88 -0.09 -1.48 16 9 C -0.08 -0.78 2.55 -89.50 -0.23 -1.00 16 10 C -0.11 -1.25 5.42 -25.08 -0.14 -1.39 16 11 C -0.13 -1.14 6.91 -24.74 -0.17 -1.32 16 12 C -0.12 -1.00 6.83 -25.07 -0.17 -1.18 16 13 C -0.12 -1.00 6.46 -25.61 -0.17 -1.16 16 14 C 0.11 1.35 6.34 -3.71 -0.02 1.33 16 15 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 16 C 0.18 3.45 2.19 -67.89 -0.15 3.30 16 17 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 18 N -0.72 -17.19 4.41 -53.39 -0.24 -17.43 16 19 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 20 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 23 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 32 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 33 H 0.09 0.91 7.55 -51.93 -0.39 0.52 16 34 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 35 H 0.06 0.72 7.76 -51.93 -0.40 0.32 16 36 H 0.07 0.94 7.65 -51.93 -0.40 0.54 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.48 7.67 -51.93 -0.40 0.09 16 43 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.38 9.93 7.51 -40.82 -0.31 9.62 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -30.03 367.46 -9.76 -39.80 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -8.81 Total: 7.83 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.52 Total: -7.59 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.02 Total: -53.28 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.03 -9.76 -39.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035915143.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.175 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.60 seconds