Wall clock time and date at job start Fri Apr 10 2020 20:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.49711 * 2 1 4 4 C 1.52772 * 109.59134 * 240.04970 * 2 1 3 5 5 N 1.46922 * 109.00951 * 185.53729 * 4 2 1 6 6 C 1.34780 * 120.62856 * 233.58666 * 5 4 2 7 7 O 1.21282 * 119.99926 * 359.71504 * 6 5 4 8 8 C 1.50697 * 119.99655 * 179.71740 * 6 5 4 9 9 C 1.53004 * 109.46862 * 179.97438 * 8 6 5 10 10 C 1.54894 * 110.48128 * 68.24509 * 9 8 6 11 11 C 1.55238 * 102.58338 * 156.67574 * 10 9 8 12 12 C 1.54266 * 104.23333 * 322.08174 * 11 10 9 13 13 C 1.53869 * 106.59800 * 23.61579 * 12 11 10 14 14 C 1.46924 * 118.74028 * 53.30684 * 5 4 2 15 15 C 1.53196 * 108.77647 * 306.64571 * 14 5 4 16 16 C 1.53037 * 109.50014 * 120.06676 * 2 1 3 17 17 H 1.09002 * 109.46120 * 61.32700 * 16 2 1 18 18 N 1.46501 * 109.45109 * 301.36392 * 16 2 1 19 19 C 1.36929 * 120.00358 * 154.93795 * 18 16 2 20 20 H 1.08006 * 120.00064 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00053 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99957 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00066 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47183 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47168 * 119.99725 * 23 21 19 26 26 H 1.48502 * 109.47111 * 239.99986 * 23 21 19 27 27 H 1.08999 * 109.46989 * 299.93110 * 1 2 3 28 28 H 1.08996 * 109.46711 * 59.93216 * 1 2 3 29 29 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.50695 * 65.64836 * 4 2 1 31 31 H 1.08999 * 109.42651 * 305.37409 * 4 2 1 32 32 H 1.09002 * 109.47212 * 60.00426 * 8 6 5 33 33 H 1.08991 * 109.47390 * 299.99580 * 8 6 5 34 34 H 1.09002 * 110.43542 * 305.70357 * 9 8 6 35 35 H 1.08996 * 110.75388 * 275.05927 * 10 9 8 36 36 H 1.08993 * 110.76071 * 38.44153 * 10 9 8 37 37 H 1.09005 * 110.46917 * 203.39204 * 11 10 9 38 38 H 1.09006 * 110.46947 * 80.77225 * 11 10 9 39 39 H 1.08999 * 110.03060 * 264.32313 * 12 11 10 40 40 H 1.09003 * 110.02805 * 142.89578 * 12 11 10 41 41 H 1.09001 * 110.02983 * 240.71432 * 13 12 11 42 42 H 1.08995 * 110.03881 * 119.28625 * 13 12 11 43 43 H 1.08999 * 109.58911 * 66.42954 * 14 5 4 44 44 H 1.08996 * 109.58676 * 186.86102 * 14 5 4 45 45 H 1.08996 * 109.49839 * 174.58700 * 15 14 5 46 46 H 1.09009 * 109.49504 * 294.65333 * 15 14 5 47 47 H 0.97001 * 119.99618 * 334.93490 * 18 16 2 48 48 H 0.97003 * 119.99708 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0423 -0.7186 -1.2471 5 7 3.5053 -0.8283 -1.1691 6 6 4.2819 -0.3844 -2.1773 7 8 3.7739 0.1066 -3.1630 8 6 5.7814 -0.4983 -2.0796 9 6 6.4199 0.0741 -3.3467 10 6 6.2126 1.6077 -3.4128 11 6 7.3716 2.0661 -4.3384 12 6 8.5570 1.1642 -3.9368 13 6 7.9519 -0.1023 -3.3064 14 6 4.1060 -1.4255 0.0314 15 6 3.5709 -0.6940 1.2665 16 6 2.0409 -0.7228 1.2485 17 1 1.6973 -1.7571 1.2354 18 7 1.5260 -0.0526 2.4451 19 6 1.3946 -0.7489 3.6168 20 1 1.6702 -1.7923 3.6588 21 6 0.9063 -0.1139 4.7505 22 7 0.5699 1.1576 4.6993 23 14 0.7277 -1.0636 6.3492 24 1 1.1714 -2.4660 6.1441 25 1 1.5641 -0.4279 7.3987 26 1 -0.6948 -1.0523 6.7754 27 1 -0.3633 0.5128 0.8906 28 1 -0.3632 0.5149 -0.8894 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7652 -0.1496 -2.1346 31 1 1.6032 -1.7149 -1.2974 32 1 6.0601 -1.5468 -1.9746 33 1 6.1324 0.0597 -1.2116 34 1 6.0039 -0.4056 -4.2326 35 1 5.2451 1.8481 -3.8533 36 1 6.3092 2.0536 -2.4229 37 1 7.6114 3.1141 -4.1584 38 1 7.1092 1.9080 -5.3845 39 1 9.1878 1.6778 -3.2113 40 1 9.1406 0.9000 -4.8187 41 1 8.2891 -0.2034 -2.2748 42 1 8.2419 -0.9811 -3.8821 43 1 3.8387 -2.4808 0.0874 44 1 5.1902 -1.3229 -0.0128 45 1 3.9335 -1.1885 2.1677 46 1 3.9159 0.3399 1.2548 47 1 1.2782 0.8845 2.4074 48 1 0.2283 1.6011 5.4914 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035915146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:53 Heat of formation + Delta-G solvation = -53.488693 kcal Electronic energy + Delta-G solvation = -24588.532479 eV Core-core repulsion = 21256.152779 eV Total energy + Delta-G solvation = -3332.379699 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.25431 -38.41837 -37.25721 -34.58949 -32.99883 -31.65859 -31.35335 -29.31239 -28.76222 -27.08513 -25.51131 -24.51571 -22.74465 -21.65243 -20.74281 -20.18776 -19.61423 -18.78096 -17.11525 -16.93183 -16.20321 -15.54251 -15.26028 -14.91999 -14.81093 -14.11678 -13.78973 -13.76337 -13.61509 -13.37606 -13.28979 -12.72801 -12.46878 -12.34094 -11.99785 -11.78373 -11.56152 -11.45220 -11.28393 -11.11699 -11.05687 -10.96229 -10.81391 -10.78243 -10.68622 -10.63614 -10.53777 -10.39615 -10.17810 -9.76522 -9.62646 -9.54864 -8.92462 -8.42420 -6.98195 -5.79573 -3.08211 2.76199 3.14876 3.40415 3.46129 3.48423 4.37780 4.46410 4.55546 4.57530 4.75998 5.04719 5.06098 5.18737 5.26489 5.29925 5.31984 5.37471 5.40881 5.49316 5.52254 5.55940 5.62604 5.63720 5.68608 5.69657 5.78083 5.81739 5.88462 5.96389 5.98650 6.09201 6.15344 6.17563 6.25002 6.30405 6.36791 6.39776 6.43516 6.54717 6.65217 6.80956 6.92674 7.04894 7.58220 7.67042 8.32077 8.38681 9.50169 10.07860 10.42705 11.42984 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.024322 B = 0.003193 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.933633 B = 8766.427910 C = 9207.655231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.120 3.880 5 N -0.608 5.608 6 C 0.514 3.486 7 O -0.548 6.548 8 C -0.134 4.134 9 C -0.076 4.076 10 C -0.118 4.118 11 C -0.126 4.126 12 C -0.124 4.124 13 C -0.122 4.122 14 C 0.107 3.893 15 C -0.152 4.152 16 C 0.184 3.816 17 H 0.047 0.953 18 N -0.721 5.721 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.384 0.616 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.775 -3.310 -15.999 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.086 0.914 4 C -0.003 4.003 5 N -0.341 5.341 6 C 0.302 3.698 7 O -0.426 6.426 8 C -0.174 4.174 9 C -0.094 4.094 10 C -0.155 4.155 11 C -0.164 4.164 12 C -0.162 4.162 13 C -0.159 4.159 14 C -0.017 4.017 15 C -0.193 4.193 16 C 0.074 3.926 17 H 0.065 0.935 18 N -0.361 5.361 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.218 0.782 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.486 -3.189 -16.362 20.827 hybrid contribution -0.113 -0.220 1.224 1.249 sum 12.373 -3.409 -15.138 19.846 Atomic orbital electron populations 1.21655 0.94153 1.01724 1.01824 1.21662 0.96559 1.00060 0.94732 0.91367 1.21583 0.78785 1.00654 0.99240 1.48204 1.07130 1.60498 1.18284 1.20650 0.89423 0.77316 0.82384 1.90645 1.75670 1.45006 1.31284 1.21784 0.92133 1.03150 1.00288 1.21751 0.94100 0.96624 0.96966 1.22626 0.98907 0.94440 0.99548 1.22424 0.95292 0.98962 0.99687 1.22116 0.97809 0.96064 1.00180 1.22221 0.94864 0.97886 1.00976 1.21864 0.97635 0.97323 0.84834 1.22688 1.00407 1.00388 0.95863 1.20185 0.90344 0.95658 0.86425 0.93474 1.42421 1.76460 1.11417 1.05808 1.19256 1.35758 0.94095 0.87713 0.91201 1.24733 1.02108 0.96029 0.98064 1.69672 1.50036 1.09486 1.28820 0.86157 0.77324 0.78858 0.84074 1.20593 1.21940 1.21923 0.90778 0.93845 0.93087 0.89476 0.91843 0.89158 0.88851 0.90140 0.90363 0.91936 0.91954 0.91818 0.91995 0.92161 0.91670 0.91930 0.91558 0.90472 0.90619 0.92226 0.78229 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.03 37.16 0.34 -1.89 16 2 C -0.11 -1.82 2.44 -90.72 -0.22 -2.04 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.12 1.76 5.69 -3.93 -0.02 1.74 16 5 N -0.61 -8.44 2.98 -173.03 -0.52 -8.95 16 6 C 0.51 7.15 7.50 -10.99 -0.08 7.07 16 7 O -0.55 -9.21 14.02 5.56 0.08 -9.13 16 8 C -0.13 -1.38 3.40 -27.88 -0.09 -1.48 16 9 C -0.08 -0.77 2.45 -88.96 -0.22 -0.99 16 10 C -0.12 -1.29 5.72 -24.55 -0.14 -1.43 16 11 C -0.13 -1.15 6.84 -24.88 -0.17 -1.32 16 12 C -0.12 -1.00 6.80 -25.62 -0.17 -1.17 16 13 C -0.12 -1.00 6.37 -25.62 -0.16 -1.17 16 14 C 0.11 1.34 6.34 -3.71 -0.02 1.32 16 15 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 16 C 0.18 3.44 2.20 -67.89 -0.15 3.29 16 17 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 18 N -0.72 -17.16 4.41 -53.39 -0.24 -17.39 16 19 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 20 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 23 Si 0.90 21.90 29.55 -169.99 -5.02 16.88 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 33 H 0.09 0.90 7.61 -51.93 -0.40 0.51 16 34 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 35 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 36 H 0.06 0.69 8.00 -51.93 -0.42 0.28 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.50 7.84 -51.93 -0.41 0.09 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.78 5.93 -51.93 -0.31 0.48 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 47 H 0.38 9.91 7.50 -40.82 -0.31 9.60 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -30.02 367.44 -9.77 -39.78 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.81 Total: 7.72 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.52 Total: -7.61 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.03 Total: -53.17 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.02 -9.77 -39.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035915146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.704 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds