Wall clock time and date at job start Fri Apr 10 2020 20:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.52339 * 2 1 4 4 C 1.53188 * 109.49644 * 120.08426 * 2 1 3 5 5 N 1.46923 * 108.77386 * 174.58308 * 4 2 1 6 6 C 1.34777 * 120.63085 * 126.37275 * 5 4 2 7 7 O 1.21278 * 119.99854 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46912 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47060 * 179.97438 * 9 8 6 11 11 C 1.53785 * 113.61712 * 272.50079 * 10 9 8 12 12 C 1.53782 * 87.08069 * 220.01782 * 11 10 9 13 13 C 1.53781 * 113.61559 * 175.00203 * 10 9 8 14 14 C 1.46927 * 118.74168 * 306.64423 * 5 4 2 15 15 C 1.52764 * 109.00591 * 53.30853 * 14 5 4 16 16 C 1.53037 * 109.49539 * 239.92465 * 2 1 3 17 17 H 1.08997 * 109.46450 * 58.67437 * 16 2 1 18 18 N 1.46499 * 109.46021 * 298.70302 * 16 2 1 19 19 C 1.36943 * 120.00337 * 155.00149 * 18 16 2 20 20 H 1.08002 * 119.99830 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00168 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00179 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99893 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47068 * 89.99482 * 23 21 19 25 25 H 1.48502 * 109.47269 * 209.99513 * 23 21 19 26 26 H 1.48502 * 109.47111 * 329.99846 * 23 21 19 27 27 H 1.09000 * 109.47148 * 299.91928 * 1 2 3 28 28 H 1.08999 * 109.47006 * 59.91395 * 1 2 3 29 29 H 1.08998 * 109.47551 * 179.91328 * 1 2 3 30 30 H 1.09005 * 109.58691 * 54.80288 * 4 2 1 31 31 H 1.08989 * 109.70503 * 294.44477 * 4 2 1 32 32 H 1.09001 * 109.46980 * 59.99654 * 8 6 5 33 33 H 1.08992 * 109.47158 * 299.99760 * 8 6 5 34 34 H 1.09002 * 109.47398 * 300.00078 * 9 8 6 35 35 H 1.09001 * 109.47194 * 60.00258 * 9 8 6 36 36 H 1.09006 * 112.85138 * 43.80478 * 10 9 8 37 37 H 1.08998 * 113.61167 * 334.56695 * 11 10 9 38 38 H 1.08998 * 113.61682 * 105.46547 * 11 10 9 39 39 H 1.09001 * 113.61095 * 270.87660 * 12 11 10 40 40 H 1.09000 * 113.60871 * 139.98313 * 12 11 10 41 41 H 1.09003 * 113.61181 * 254.52982 * 13 10 9 42 42 H 1.08992 * 113.61416 * 25.35035 * 13 10 9 43 43 H 1.08994 * 109.58928 * 173.14412 * 14 5 4 44 44 H 1.08998 * 109.59054 * 293.57111 * 14 5 4 45 45 H 1.09005 * 109.56273 * 185.55024 * 15 14 5 46 46 H 1.09000 * 109.35802 * 65.50097 * 15 14 5 47 47 H 0.96997 * 120.00218 * 335.00285 * 18 16 2 48 48 H 0.96998 * 119.99977 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5045 -0.8292 1.1695 6 6 4.2811 -0.3859 2.1778 7 8 3.7732 0.1062 3.1631 8 6 5.7807 -0.5004 2.0805 9 6 6.4191 0.0727 3.3473 10 6 7.9415 -0.0442 3.2488 11 6 8.4904 -1.3875 3.7579 12 6 9.6440 -0.5882 4.3865 13 6 8.6871 0.6151 4.4211 14 6 4.1055 -1.4216 -0.0333 15 6 3.5708 -0.6950 -1.2661 16 6 2.0407 -0.7230 -1.2484 17 1 1.6583 -0.2242 -2.1389 18 7 1.5783 -2.1129 -1.2310 19 6 1.4480 -2.8061 -2.4048 20 1 1.6859 -2.3278 -3.3435 21 6 1.0093 -4.1229 -2.3883 22 7 0.7189 -4.7056 -1.2444 23 14 0.8324 -5.0685 -3.9895 24 1 2.1099 -5.7589 -4.3005 25 1 -0.2528 -6.0732 -3.8538 26 1 0.4995 -4.1254 -5.0872 27 1 -0.3633 0.5126 0.8907 28 1 -0.3633 0.5152 -0.8892 29 1 -0.3634 -1.0276 -0.0016 30 1 1.6052 -1.7217 1.2979 31 1 1.7637 -0.1603 2.1401 32 1 6.1321 0.0574 1.2125 33 1 6.0588 -1.5490 1.9755 34 1 6.1409 1.1214 3.4520 35 1 6.0677 -0.4849 4.2155 36 1 8.3257 0.2432 2.2701 37 1 7.8457 -1.8732 4.4904 38 1 8.8083 -2.0596 2.9608 39 1 10.4946 -0.4507 3.7188 40 1 9.9339 -0.9442 5.3751 41 1 9.1638 1.5597 4.1594 42 1 8.0957 0.6782 5.3345 43 1 5.1894 -1.3161 0.0098 44 1 3.8412 -2.4775 -0.0918 45 1 3.9334 -1.1896 -2.1672 46 1 3.9159 0.3389 -1.2541 47 1 1.3643 -2.5423 -0.3880 48 1 0.4127 -5.6259 -1.2328 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035977520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:13:57 Heat of formation + Delta-G solvation = -25.223320 kcal Electronic energy + Delta-G solvation = -24581.442744 eV Core-core repulsion = 21250.288723 eV Total energy + Delta-G solvation = -3331.154021 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.08640 -39.01070 -37.64123 -34.23458 -33.13483 -32.40494 -31.37752 -29.17832 -27.33195 -25.84068 -25.60407 -24.55286 -23.45869 -22.01864 -21.61540 -19.64123 -19.31056 -18.05587 -17.37025 -16.76116 -15.88217 -15.61126 -15.38162 -14.71694 -14.67787 -14.17934 -13.99181 -13.91390 -13.28074 -13.22084 -12.96853 -12.76497 -12.61174 -12.51050 -12.21303 -12.00104 -11.64703 -11.42114 -11.27422 -11.17254 -11.05217 -10.91749 -10.79069 -10.71901 -10.48073 -10.44451 -10.32646 -10.23689 -10.19529 -9.83516 -9.55768 -9.42299 -8.93738 -8.17058 -6.98785 -5.80308 -3.08775 2.91911 3.34387 3.40153 3.46194 3.47579 4.40434 4.47855 4.52938 4.56157 4.67961 4.80890 5.07431 5.18305 5.25283 5.34148 5.36974 5.42552 5.50842 5.54020 5.58265 5.58957 5.60690 5.66901 5.71795 5.75461 5.76641 5.84276 5.94781 5.99053 6.08768 6.11182 6.14462 6.20383 6.27387 6.32948 6.39088 6.43335 6.51459 6.66019 6.69254 6.77912 6.94430 7.03235 7.67153 7.79497 8.38287 8.47847 9.49827 10.06859 10.41964 11.42110 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.003435 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.266521 B = 8148.507745 C = 8993.597905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.118 3.882 5 N -0.602 5.602 6 C 0.510 3.490 7 O -0.557 6.557 8 C -0.137 4.137 9 C -0.092 4.092 10 C -0.112 4.112 11 C -0.139 4.139 12 C -0.144 4.144 13 C -0.138 4.138 14 C 0.114 3.886 15 C -0.150 4.150 16 C 0.179 3.821 17 H 0.050 0.950 18 N -0.719 5.719 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.283 1.283 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.433 9.873 7.344 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.334 5.334 6 C 0.299 3.701 7 O -0.437 6.437 8 C -0.177 4.177 9 C -0.130 4.130 10 C -0.130 4.130 11 C -0.176 4.176 12 C -0.182 4.182 13 C -0.175 4.175 14 C -0.009 4.009 15 C -0.192 4.192 16 C 0.068 3.932 17 H 0.068 0.932 18 N -0.361 5.361 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.209 1.209 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.129 10.046 7.680 18.228 hybrid contribution -0.136 -0.863 -0.866 1.230 sum 12.993 9.183 6.815 17.309 Atomic orbital electron populations 1.21667 0.94298 1.03167 1.00383 1.21693 0.96457 0.98792 0.95841 0.91738 1.21615 0.78932 1.01415 0.98440 1.48161 1.07082 1.59978 1.18215 1.20679 0.89503 0.77472 0.82452 1.90642 1.75799 1.45782 1.31443 1.21676 0.92050 1.03511 1.00470 1.21320 0.92881 1.01876 0.96924 1.22595 0.94906 0.96875 0.98627 1.23005 0.97802 0.96373 1.00470 1.22811 0.97003 0.97361 1.00986 1.22934 0.98081 0.97509 0.98975 1.21634 0.96410 0.99076 0.83760 1.22452 1.00534 0.98634 0.97535 1.20206 0.90781 0.87349 0.94829 0.93204 1.42484 1.78967 1.07719 1.06948 1.19217 1.37153 0.93877 0.86575 0.91276 1.24708 1.02291 0.97213 0.96602 1.69650 1.51707 1.13042 1.23671 0.86236 0.77275 0.79830 0.83096 1.21830 1.21892 1.20863 0.93796 0.92857 0.91048 0.90831 0.89931 0.89227 0.89061 0.91286 0.91211 0.89295 0.90030 0.91568 0.90405 0.91706 0.91736 0.90072 0.91169 0.89806 0.90758 0.93396 0.78084 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.06 37.16 0.34 -1.90 16 2 C -0.11 -1.79 2.67 -90.50 -0.24 -2.03 16 3 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 2.05 5.42 -3.71 -0.02 2.03 16 5 N -0.60 -9.79 2.98 -173.04 -0.52 -10.30 16 6 C 0.51 8.10 7.70 -10.98 -0.08 8.02 16 7 O -0.56 -10.55 15.39 5.56 0.09 -10.46 16 8 C -0.14 -1.61 4.04 -27.88 -0.11 -1.72 16 9 C -0.09 -1.02 4.34 -26.73 -0.12 -1.13 16 10 C -0.11 -0.99 3.65 -89.81 -0.33 -1.32 16 11 C -0.14 -1.19 7.63 -25.92 -0.20 -1.39 16 12 C -0.14 -1.11 8.08 -25.92 -0.21 -1.32 16 13 C -0.14 -1.13 7.64 -25.92 -0.20 -1.33 16 14 C 0.11 1.77 6.06 -3.93 -0.02 1.75 16 15 C -0.15 -2.44 5.76 -26.83 -0.15 -2.60 16 16 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 N -0.72 -16.46 3.64 -53.39 -0.19 -16.65 16 19 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 20 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 23 Si 0.90 21.68 29.55 -169.99 -5.02 16.65 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.35 7.53 -51.93 -0.39 0.95 16 30 H 0.07 1.41 6.64 -51.93 -0.34 1.07 16 31 H 0.08 1.45 7.00 -51.94 -0.36 1.08 16 32 H 0.09 0.92 7.68 -51.93 -0.40 0.52 16 33 H 0.09 1.00 7.95 -51.93 -0.41 0.58 16 34 H 0.07 0.83 8.10 -51.93 -0.42 0.40 16 35 H 0.07 0.85 7.80 -51.93 -0.41 0.45 16 36 H 0.09 0.74 8.13 -51.93 -0.42 0.32 16 37 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.07 0.88 5.93 -51.93 -0.31 0.58 16 44 H 0.08 1.56 7.74 -51.93 -0.40 1.15 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.38 9.47 5.92 -40.82 -0.24 9.23 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -29.34 369.88 -9.83 -39.17 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.71 Total: 8.83 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.77 Total: -6.52 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.01 Total: -53.25 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.34 -9.83 -39.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035977520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.949 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds