Wall clock time and date at job start Fri Apr 10 2020 20:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52389 * 2 1 4 4 C 1.53191 * 109.49475 * 120.07925 * 2 1 3 5 5 N 1.46928 * 108.77343 * 174.58721 * 4 2 1 6 6 C 1.34783 * 120.62874 * 126.37163 * 5 4 2 7 7 O 1.21284 * 119.99853 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00028 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47337 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47149 * 179.97438 * 9 8 6 11 11 C 1.53782 * 113.61670 * 272.49737 * 10 9 8 12 12 C 1.53777 * 87.08250 * 220.01793 * 11 10 9 13 13 C 1.53781 * 113.61363 * 174.99750 * 10 9 8 14 14 C 1.46919 * 118.73982 * 306.39079 * 5 4 2 15 15 C 1.53195 * 108.89273 * 53.53793 * 14 5 4 16 16 C 1.53039 * 109.49929 * 239.91849 * 2 1 3 17 17 H 1.09007 * 109.45640 * 298.70737 * 16 2 1 18 18 N 1.46499 * 109.46160 * 58.66119 * 16 2 1 19 19 C 1.36928 * 120.00250 * 205.00378 * 18 16 2 20 20 H 1.08000 * 120.00193 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00515 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00431 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99677 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47004 * 90.00205 * 23 21 19 25 25 H 1.48502 * 109.47141 * 210.00662 * 23 21 19 26 26 H 1.48498 * 109.47036 * 330.00299 * 23 21 19 27 27 H 1.08996 * 109.47522 * 299.92308 * 1 2 3 28 28 H 1.09006 * 109.47027 * 59.92218 * 1 2 3 29 29 H 1.08998 * 109.46892 * 179.91700 * 1 2 3 30 30 H 1.08998 * 109.58966 * 54.79787 * 4 2 1 31 31 H 1.08999 * 109.58758 * 294.37144 * 4 2 1 32 32 H 1.09005 * 109.46926 * 300.00024 * 8 6 5 33 33 H 1.09006 * 109.47172 * 59.99213 * 8 6 5 34 34 H 1.08995 * 109.46840 * 299.99766 * 9 8 6 35 35 H 1.08998 * 109.47182 * 59.99642 * 9 8 6 36 36 H 1.08998 * 112.85200 * 43.80075 * 10 9 8 37 37 H 1.09001 * 113.61163 * 334.56977 * 11 10 9 38 38 H 1.08997 * 113.61748 * 105.46597 * 11 10 9 39 39 H 1.08995 * 113.61476 * 270.88150 * 12 11 10 40 40 H 1.09003 * 113.61748 * 139.97520 * 12 11 10 41 41 H 1.08993 * 113.61364 * 254.52700 * 13 10 9 42 42 H 1.08991 * 113.61457 * 25.43587 * 13 10 9 43 43 H 1.09002 * 109.58751 * 173.39743 * 14 5 4 44 44 H 1.08996 * 109.58750 * 293.67928 * 14 5 4 45 45 H 1.08997 * 109.50046 * 65.38734 * 15 14 5 46 46 H 1.09003 * 109.49733 * 185.48713 * 15 14 5 47 47 H 0.97007 * 119.99658 * 24.99911 * 18 16 2 48 48 H 0.97002 * 119.99664 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3855 2.1781 7 8 3.7730 0.1057 3.1637 8 6 5.7806 -0.5001 2.0809 9 6 6.4191 0.0732 3.3476 10 6 7.9414 -0.0437 3.2492 11 6 8.4904 -1.3869 3.7584 12 6 9.6439 -0.5875 4.3869 13 6 8.6869 0.6158 4.4214 14 6 4.1053 -1.4267 -0.0306 15 6 3.5713 -0.6980 -1.2679 16 6 2.0409 -0.7231 -1.2483 17 1 1.6967 -1.7573 -1.2352 18 7 1.5266 -0.0530 -2.4453 19 6 1.3965 -0.7493 -3.6171 20 1 1.6734 -1.7923 -3.6592 21 6 0.9097 -0.1143 -4.7515 22 7 0.7851 -0.7834 -5.8780 23 14 0.4314 1.6900 -4.6791 24 1 1.6094 2.5283 -5.0182 25 1 -0.6595 1.9524 -5.6519 26 1 -0.0358 2.0237 -3.3096 27 1 -0.3634 0.5126 0.8906 28 1 -0.3633 0.5151 -0.8893 29 1 -0.3633 -1.0277 -0.0015 30 1 1.6052 -1.7215 1.2981 31 1 1.7638 -0.1579 2.1389 32 1 6.0588 -1.5488 1.9759 33 1 6.1321 0.0577 1.2128 34 1 6.1408 1.1218 3.4521 35 1 6.0676 -0.4842 4.2158 36 1 8.3256 0.2436 2.2704 37 1 7.8457 -1.8725 4.4909 38 1 8.8083 -2.0591 2.9614 39 1 10.4945 -0.4500 3.7193 40 1 9.9339 -0.9432 5.3757 41 1 9.1636 1.5604 4.1595 42 1 8.0960 0.6777 5.3351 43 1 5.1896 -1.3246 0.0139 44 1 3.8397 -2.4824 -0.0852 45 1 3.9164 0.3358 -1.2585 46 1 3.9340 -1.1951 -2.1676 47 1 1.2782 0.8839 -2.4076 48 1 0.4446 -0.3397 -6.6705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035977525.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:01 Heat of formation + Delta-G solvation = -23.675208 kcal Electronic energy + Delta-G solvation = -24234.858649 eV Core-core repulsion = 20903.771760 eV Total energy + Delta-G solvation = -3331.086890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.25883 -39.10340 -37.74059 -34.73658 -33.30518 -32.48595 -31.54914 -29.85472 -27.49629 -25.98610 -25.76076 -24.78818 -22.64879 -22.11687 -21.51772 -19.96882 -19.71121 -18.82055 -17.56071 -17.00412 -16.01309 -15.82093 -15.52885 -15.02441 -14.69490 -14.33979 -14.15566 -13.78685 -13.46632 -13.36382 -13.05168 -12.89018 -12.70759 -12.51818 -12.40746 -12.12208 -11.95166 -11.78052 -11.53718 -11.39907 -11.17776 -11.06165 -10.91375 -10.80898 -10.69072 -10.53540 -10.44586 -10.34278 -10.25041 -9.79232 -9.65541 -9.60603 -8.95343 -8.51031 -7.30167 -5.80679 -3.16023 2.69231 3.07923 3.34565 3.37990 3.43156 4.29447 4.38102 4.40372 4.55814 4.58570 4.63710 4.92521 4.97528 5.05792 5.10548 5.16801 5.25304 5.31441 5.38545 5.44866 5.47293 5.48949 5.54282 5.57449 5.59216 5.63279 5.65910 5.70949 5.84752 5.85522 5.97043 6.02363 6.03417 6.09858 6.11410 6.27417 6.27740 6.29811 6.41242 6.52014 6.66917 6.77765 6.92780 7.50457 7.94950 8.24300 8.38523 9.16775 9.89679 10.09762 11.37596 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.003049 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.553620 B = 9181.953513 C = 9652.898096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.067 0.933 4 C 0.120 3.880 5 N -0.609 5.609 6 C 0.513 3.487 7 O -0.552 6.552 8 C -0.138 4.138 9 C -0.093 4.093 10 C -0.112 4.112 11 C -0.139 4.139 12 C -0.144 4.144 13 C -0.138 4.138 14 C 0.107 3.893 15 C -0.152 4.152 16 C 0.189 3.811 17 H 0.056 0.944 18 N -0.745 5.745 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.589 -0.510 19.063 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.086 0.914 4 C -0.003 4.003 5 N -0.342 5.342 6 C 0.301 3.699 7 O -0.430 6.430 8 C -0.178 4.178 9 C -0.131 4.131 10 C -0.131 4.131 11 C -0.176 4.176 12 C -0.182 4.182 13 C -0.175 4.175 14 C -0.016 4.016 15 C -0.193 4.193 16 C 0.079 3.921 17 H 0.074 0.926 18 N -0.387 5.387 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.581 5.581 23 Si 0.713 3.287 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.294 -0.442 19.379 23.504 hybrid contribution -0.331 1.271 -0.400 1.373 sum 12.963 0.829 18.979 22.998 Atomic orbital electron populations 1.21674 0.94188 1.02120 1.01554 1.21778 0.96543 1.00003 0.94993 0.91415 1.21657 0.78873 1.00769 0.98975 1.48217 1.07084 1.60520 1.18347 1.20737 0.89592 0.77241 0.82298 1.90661 1.75776 1.45232 1.31378 1.21698 0.91767 1.03524 1.00821 1.21325 0.93011 1.01992 0.96729 1.22600 0.94797 0.96884 0.98775 1.23001 0.97853 0.96351 1.00414 1.22813 0.97019 0.97325 1.01020 1.22937 0.98076 0.97617 0.98905 1.21860 0.97785 0.97444 0.84552 1.22652 0.99891 1.00463 0.96327 1.20168 0.90541 0.96010 0.85386 0.92588 1.42776 1.78093 1.10223 1.07627 1.19045 1.36382 0.95801 0.85929 0.89213 1.24660 1.01356 0.97424 0.95630 1.69697 1.52129 1.35690 1.00619 0.86586 0.78226 0.86841 0.77056 1.21184 1.21787 1.20308 0.93591 0.91424 0.92576 0.91543 0.89392 0.89028 0.88942 0.91191 0.91223 0.89191 0.90097 0.91580 0.90339 0.91681 0.91640 0.90074 0.90262 0.91327 0.92318 0.90050 0.80638 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.02 37.16 0.34 -1.77 16 2 C -0.11 -1.76 2.46 -90.50 -0.22 -1.99 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 4 C 0.12 1.68 5.72 -3.71 -0.02 1.66 16 5 N -0.61 -8.12 2.97 -172.77 -0.51 -8.64 16 6 C 0.51 6.96 7.70 -10.98 -0.08 6.88 16 7 O -0.55 -9.31 15.40 5.55 0.09 -9.23 16 8 C -0.14 -1.36 4.04 -27.89 -0.11 -1.47 16 9 C -0.09 -0.89 4.34 -26.73 -0.12 -1.01 16 10 C -0.11 -0.87 3.65 -89.81 -0.33 -1.20 16 11 C -0.14 -0.99 7.63 -25.92 -0.20 -1.19 16 12 C -0.14 -0.97 8.08 -25.92 -0.21 -1.18 16 13 C -0.14 -1.02 7.64 -25.91 -0.20 -1.21 16 14 C 0.11 1.29 6.34 -3.71 -0.02 1.27 16 15 C -0.15 -2.37 5.67 -26.59 -0.15 -2.52 16 16 C 0.19 3.37 2.19 -67.87 -0.15 3.23 16 17 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 18 N -0.75 -16.69 4.22 -53.37 -0.22 -16.92 16 19 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 20 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -28.71 13.97 55.49 0.78 -27.94 16 23 Si 0.88 21.76 27.74 -169.99 -4.71 17.04 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.19 7.36 -51.93 -0.38 0.80 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 32 H 0.09 0.75 7.94 -51.93 -0.41 0.34 16 33 H 0.09 0.82 7.69 -51.93 -0.40 0.42 16 34 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.07 0.73 7.80 -51.93 -0.41 0.33 16 36 H 0.09 0.67 8.13 -51.93 -0.42 0.24 16 37 H 0.08 0.59 7.89 -51.93 -0.41 0.18 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.08 0.76 5.93 -51.93 -0.31 0.46 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.36 8.13 5.37 -40.82 -0.22 7.92 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -31.34 370.74 -9.56 -40.90 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -8.82 Total: 6.30 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.73 Total: -7.11 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.04 Total: -53.49 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.34 -9.56 -40.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035977525.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.225 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds