Wall clock time and date at job start Fri Apr 10 2020 20:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34784 * 120.62853 * 233.58870 * 5 4 2 7 7 O 1.21279 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46998 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47111 * 179.97438 * 9 8 6 11 11 C 1.53778 * 113.61416 * 274.13399 * 10 9 8 12 12 C 1.53952 * 87.02073 * 220.04799 * 11 10 9 13 13 C 1.53778 * 87.11232 * 25.36724 * 12 11 10 14 14 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 15 15 C 1.53193 * 108.77550 * 306.39057 * 14 5 4 16 16 C 1.53040 * 109.31153 * 54.63854 * 15 14 5 17 17 H 1.08997 * 109.46043 * 178.61049 * 16 15 14 18 18 N 1.46505 * 109.46056 * 58.64998 * 16 15 14 19 19 C 1.36946 * 119.99484 * 84.93338 * 18 16 15 20 20 H 1.07997 * 120.00087 * 0.02562 * 19 18 16 21 21 C 1.38805 * 119.99308 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00858 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99517 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47275 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47007 * 120.00072 * 23 21 19 26 26 H 1.48496 * 109.47160 * 240.00233 * 23 21 19 27 27 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 29 29 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 30 30 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 31 31 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 32 32 H 1.09001 * 109.47077 * 299.99541 * 8 6 5 33 33 H 1.08999 * 109.47395 * 60.00261 * 8 6 5 34 34 H 1.09007 * 109.46993 * 300.00268 * 9 8 6 35 35 H 1.09004 * 109.46672 * 59.99544 * 9 8 6 36 36 H 1.09001 * 112.85135 * 45.33689 * 10 9 8 37 37 H 1.08993 * 113.61903 * 334.57358 * 11 10 9 38 38 H 1.09004 * 113.61169 * 105.47167 * 11 10 9 39 39 H 1.08997 * 113.53902 * 270.81305 * 12 11 10 40 40 H 1.09001 * 113.74184 * 139.94632 * 12 11 10 41 41 H 1.08994 * 113.61698 * 220.09045 * 13 12 11 42 42 H 1.08994 * 113.69529 * 89.19038 * 13 12 11 43 43 H 1.09004 * 109.58885 * 66.17987 * 14 5 4 44 44 H 1.09000 * 109.58663 * 186.46129 * 14 5 4 45 45 H 1.09005 * 109.49580 * 174.58602 * 15 14 5 46 46 H 1.08994 * 109.49562 * 294.64929 * 15 14 5 47 47 H 0.96999 * 120.00270 * 264.93201 * 18 16 15 48 48 H 0.96993 * 120.00505 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3849 -2.1790 7 8 3.7723 0.1055 -3.1648 8 6 5.7803 -0.4999 -2.0825 9 6 6.4182 0.0719 -3.3503 10 6 7.9406 -0.0443 -3.2521 11 6 8.6023 1.1348 -2.5196 12 6 9.7168 1.0634 -3.5793 13 6 8.6772 0.4272 -4.5171 14 6 4.1059 -1.4256 0.0300 15 6 3.5715 -0.6942 1.2655 16 6 2.0414 -0.7230 1.2482 17 1 1.6588 -0.2247 2.1389 18 7 1.5796 -2.1132 1.2305 19 6 1.4500 -2.8065 2.4044 20 1 1.6879 -2.3284 3.3430 21 6 1.0119 -4.1235 2.3877 22 7 0.7215 -4.7062 1.2438 23 14 0.8345 -5.0691 3.9889 24 1 1.2215 -4.1952 5.1254 25 1 -0.5764 -5.5017 4.1546 26 1 1.7179 -6.2623 3.9597 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6057 -1.7214 -1.2982 31 1 1.7633 -0.1576 -2.1389 32 1 6.1324 0.0580 -1.2148 33 1 6.0583 -1.5486 -1.9776 34 1 6.0660 -0.4863 -4.2178 35 1 6.1401 1.1206 -3.4557 36 1 8.2684 -1.0202 -2.8942 37 1 8.0204 2.0556 -2.5592 38 1 8.9398 0.8892 -1.5126 39 1 10.5312 0.3910 -3.3100 40 1 10.0672 2.0397 -3.9142 41 1 9.0749 -0.3887 -5.1204 42 1 8.1151 1.1531 -5.1046 43 1 3.8386 -2.4808 0.0860 44 1 5.1903 -1.3252 -0.0159 45 1 3.9345 -1.1888 2.1664 46 1 3.9166 0.3396 1.2538 47 1 1.3656 -2.5425 0.3875 48 1 0.4150 -5.6264 1.2322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035977527.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:04 Heat of formation + Delta-G solvation = -25.416092 kcal Electronic energy + Delta-G solvation = -24591.053977 eV Core-core repulsion = 21259.891597 eV Total energy + Delta-G solvation = -3331.162380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.08220 -39.00642 -37.63518 -34.23374 -33.13228 -32.40307 -31.36188 -29.16668 -27.33347 -25.85309 -25.60805 -24.55127 -23.46557 -22.02483 -21.61558 -19.64292 -19.30410 -18.06953 -17.37149 -16.75841 -15.91837 -15.57177 -15.39666 -14.74774 -14.64405 -14.19541 -13.94737 -13.90918 -13.34008 -13.26596 -12.92424 -12.71951 -12.62505 -12.49075 -12.19280 -12.07457 -11.63151 -11.41909 -11.28362 -11.16712 -11.05661 -10.93447 -10.79466 -10.72422 -10.48327 -10.45281 -10.32809 -10.24692 -10.16492 -9.83266 -9.56028 -9.42345 -8.94546 -8.16926 -6.98789 -5.80520 -3.08983 2.91863 3.34403 3.39944 3.46215 3.48174 4.39992 4.46921 4.52138 4.56035 4.66925 4.80716 5.06898 5.19703 5.24341 5.32750 5.38218 5.42540 5.49662 5.54428 5.57096 5.58312 5.60593 5.66774 5.70742 5.74548 5.76097 5.83357 5.94016 5.98273 6.08876 6.10863 6.13645 6.21101 6.26998 6.32760 6.38608 6.43194 6.51382 6.65995 6.69233 6.77853 6.94264 7.03136 7.67590 7.79469 8.38027 8.47806 9.49686 10.06701 10.41795 11.41952 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.020912 B = 0.003363 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.618125 B = 8325.072480 C = 8969.304578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.118 3.882 5 N -0.603 5.603 6 C 0.510 3.490 7 O -0.557 6.557 8 C -0.137 4.137 9 C -0.092 4.092 10 C -0.112 4.112 11 C -0.139 4.139 12 C -0.144 4.144 13 C -0.138 4.138 14 C 0.113 3.887 15 C -0.150 4.150 16 C 0.179 3.821 17 H 0.050 0.950 18 N -0.719 5.719 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.384 0.616 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.503 10.839 -6.881 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.335 5.335 6 C 0.299 3.701 7 O -0.437 6.437 8 C -0.177 4.177 9 C -0.130 4.130 10 C -0.130 4.130 11 C -0.176 4.176 12 C -0.181 4.181 13 C -0.175 4.175 14 C -0.009 4.009 15 C -0.191 4.191 16 C 0.068 3.932 17 H 0.068 0.932 18 N -0.361 5.361 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.219 0.781 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.211 11.019 -7.211 18.653 hybrid contribution -0.152 -0.886 0.846 1.234 sum 13.059 10.133 -6.365 17.712 Atomic orbital electron populations 1.21667 0.94303 1.03158 1.00386 1.21696 0.96449 0.98795 0.95855 0.91743 1.21619 0.78931 1.01402 0.98444 1.48164 1.07090 1.59863 1.18335 1.20681 0.89507 0.77492 0.82432 1.90642 1.75770 1.45865 1.31388 1.21673 0.92045 1.03344 1.00645 1.21318 0.92902 1.01931 0.96846 1.22595 0.94637 0.98729 0.97050 1.23024 0.97641 0.98822 0.98134 1.22837 0.96826 1.00920 0.97564 1.22929 0.97685 1.00515 0.96383 1.21724 0.96417 0.98974 0.83780 1.22519 1.00487 0.98596 0.97493 1.20208 0.90794 0.87338 0.94824 0.93207 1.42495 1.78980 1.07705 1.06958 1.19262 1.37050 0.93834 0.86591 0.91217 1.24708 1.02326 0.97214 0.96599 1.69655 1.51770 1.13014 1.23616 0.86169 0.77289 0.79971 0.83048 1.20643 1.21984 1.21991 0.91056 0.92852 0.93799 0.90818 0.89934 0.89155 0.89127 0.91214 0.91290 0.89249 0.90103 0.91596 0.90405 0.91720 0.91686 0.90081 0.89805 0.91155 0.90799 0.93364 0.78088 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.06 37.16 0.34 -1.90 16 2 C -0.11 -1.79 2.67 -90.50 -0.24 -2.03 16 3 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 2.05 5.42 -3.71 -0.02 2.03 16 5 N -0.60 -9.78 2.97 -172.77 -0.51 -10.30 16 6 C 0.51 8.10 7.70 -10.98 -0.08 8.01 16 7 O -0.56 -10.54 15.40 5.56 0.09 -10.46 16 8 C -0.14 -1.61 4.04 -27.88 -0.11 -1.72 16 9 C -0.09 -1.02 4.33 -26.73 -0.12 -1.13 16 10 C -0.11 -0.99 3.64 -89.81 -0.33 -1.32 16 11 C -0.14 -1.14 7.65 -25.83 -0.20 -1.34 16 12 C -0.14 -1.08 8.09 -25.83 -0.21 -1.29 16 13 C -0.14 -1.13 7.65 -25.92 -0.20 -1.33 16 14 C 0.11 1.77 6.08 -3.71 -0.02 1.75 16 15 C -0.15 -2.43 5.78 -26.61 -0.15 -2.59 16 16 C 0.18 3.32 2.53 -67.89 -0.17 3.14 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 N -0.72 -16.45 3.64 -53.38 -0.19 -16.65 16 19 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 23 Si 0.90 21.67 29.55 -169.99 -5.02 16.64 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H 0.07 1.34 7.54 -51.93 -0.39 0.95 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.41 6.64 -51.93 -0.34 1.07 16 31 H 0.08 1.45 7.01 -51.93 -0.36 1.08 16 32 H 0.09 0.94 7.69 -51.93 -0.40 0.54 16 33 H 0.09 0.97 7.94 -51.93 -0.41 0.56 16 34 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.07 0.82 7.83 -51.93 -0.41 0.42 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.68 7.92 -51.93 -0.41 0.27 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 44 H 0.07 0.89 5.93 -51.93 -0.31 0.58 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.38 9.46 5.92 -40.82 -0.24 9.22 16 48 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -29.36 369.98 -9.82 -39.18 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.72 Total: 8.70 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.76 Total: -6.43 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.02 Total: -53.22 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.36 -9.82 -39.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035977527.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.769 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds