Wall clock time and date at job start Fri Apr 10 2020 20:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34784 * 120.62853 * 233.58870 * 5 4 2 7 7 O 1.21279 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46998 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47111 * 179.97438 * 9 8 6 11 11 C 1.53782 * 113.61544 * 272.49760 * 10 9 8 12 12 C 1.53780 * 87.08019 * 220.02253 * 11 10 9 13 13 C 1.53778 * 87.08288 * 25.43210 * 12 11 10 14 14 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 15 15 C 1.53193 * 108.77550 * 306.39057 * 14 5 4 16 16 C 1.53040 * 109.31153 * 54.63854 * 15 14 5 17 17 H 1.09004 * 109.46170 * 58.65203 * 16 15 14 18 18 N 1.46502 * 109.45822 * 178.61249 * 16 15 14 19 19 C 1.36935 * 120.00003 * 275.06158 * 18 16 15 20 20 H 1.08007 * 119.99949 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99988 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99900 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00132 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46879 * 90.00270 * 23 21 19 25 25 H 1.48493 * 109.47255 * 210.00758 * 23 21 19 26 26 H 1.48502 * 109.46707 * 330.00546 * 23 21 19 27 27 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 29 29 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 30 30 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 31 31 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 32 32 H 1.09001 * 109.47077 * 299.99541 * 8 6 5 33 33 H 1.08999 * 109.47395 * 60.00261 * 8 6 5 34 34 H 1.09007 * 109.46993 * 300.00268 * 9 8 6 35 35 H 1.09004 * 109.46672 * 59.99544 * 9 8 6 36 36 H 1.09002 * 112.85157 * 43.80800 * 10 9 8 37 37 H 1.08999 * 113.61151 * 334.56596 * 11 10 9 38 38 H 1.08999 * 113.61723 * 105.47143 * 11 10 9 39 39 H 1.09000 * 113.61174 * 270.88207 * 12 11 10 40 40 H 1.09005 * 113.69024 * 139.99337 * 12 11 10 41 41 H 1.09002 * 113.61285 * 220.01995 * 13 12 11 42 42 H 1.09003 * 113.68854 * 89.13166 * 13 12 11 43 43 H 1.09004 * 109.58885 * 66.17987 * 14 5 4 44 44 H 1.09002 * 109.58368 * 186.60251 * 14 5 4 45 45 H 1.09005 * 109.49580 * 174.58602 * 15 14 5 46 46 H 1.08994 * 109.49562 * 294.64929 * 15 14 5 47 47 H 0.97005 * 119.99748 * 95.07143 * 18 16 15 48 48 H 0.96997 * 119.99945 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3849 -2.1790 7 8 3.7723 0.1055 -3.1648 8 6 5.7803 -0.4999 -2.0825 9 6 6.4182 0.0719 -3.3503 10 6 7.9406 -0.0443 -3.2521 11 6 8.6061 1.1539 -2.5548 12 6 9.7179 1.0513 -3.6122 13 6 8.6753 0.3922 -4.5306 14 6 4.1059 -1.4256 0.0300 15 6 3.5715 -0.6942 1.2655 16 6 2.0414 -0.7230 1.2482 17 1 1.6978 -1.7573 1.2351 18 7 1.5272 -0.0532 2.4453 19 6 1.3976 -0.7496 3.6172 20 1 1.6749 -1.7927 3.6590 21 6 0.9108 -0.1149 4.7516 22 7 0.5734 1.1563 4.7008 23 14 0.7347 -1.0647 6.3505 24 1 1.9926 -0.9557 7.1321 25 1 -0.3893 -0.5007 7.1401 26 1 0.4608 -2.4930 6.0500 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6057 -1.7214 -1.2982 31 1 1.7633 -0.1576 -2.1389 32 1 6.1324 0.0580 -1.2148 33 1 6.0583 -1.5486 -1.9776 34 1 6.0660 -0.4863 -4.2178 35 1 6.1401 1.1206 -3.4557 36 1 8.2675 -1.0109 -2.8690 37 1 8.0257 2.0743 -2.6195 38 1 8.9453 0.9365 -1.5420 39 1 10.5318 0.3848 -3.3267 40 1 10.0693 2.0178 -3.9736 41 1 9.0705 -0.4402 -5.1129 42 1 8.1133 1.1032 -5.1362 43 1 3.8386 -2.4808 0.0860 44 1 5.1902 -1.3230 -0.0148 45 1 3.9345 -1.1888 2.1664 46 1 3.9166 0.3396 1.2538 47 1 1.2783 0.8837 2.4078 48 1 0.2329 1.5998 5.4934 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035977531.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:08 Heat of formation + Delta-G solvation = -27.636760 kcal Electronic energy + Delta-G solvation = -24204.942904 eV Core-core repulsion = 20873.684229 eV Total energy + Delta-G solvation = -3331.258675 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18892 -39.05330 -37.62194 -34.59160 -33.24269 -32.43662 -31.44202 -29.32422 -27.41708 -25.90014 -25.64260 -24.71271 -22.85098 -22.05423 -21.60222 -19.80301 -19.63685 -18.70711 -17.12721 -16.95059 -15.99163 -15.72508 -15.46909 -15.01013 -14.65618 -14.08775 -14.04943 -13.77473 -13.50974 -13.30641 -13.02050 -12.78359 -12.66017 -12.46092 -12.29863 -12.06268 -11.78836 -11.56372 -11.45413 -11.18087 -11.12625 -10.95177 -10.82360 -10.76364 -10.63434 -10.41689 -10.39249 -10.30264 -10.21126 -9.76616 -9.63085 -9.57802 -8.91758 -8.43175 -6.98120 -5.79260 -3.07953 2.75144 3.14707 3.40699 3.46131 3.47859 4.33259 4.42014 4.44555 4.55905 4.62670 4.68691 4.95458 5.08184 5.13768 5.25771 5.27535 5.36295 5.37822 5.45295 5.47261 5.53334 5.53875 5.58045 5.64965 5.67371 5.69381 5.70937 5.80309 5.90782 5.98181 6.07230 6.09560 6.12616 6.15799 6.30333 6.32876 6.39883 6.43585 6.54580 6.65164 6.80968 6.92650 7.05133 7.57376 7.66666 8.30486 8.39031 9.50381 10.08073 10.42947 11.43269 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021621 B = 0.003046 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.751554 B = 9191.644891 C = 9988.896015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.608 5.608 6 C 0.512 3.488 7 O -0.552 6.552 8 C -0.138 4.138 9 C -0.093 4.093 10 C -0.112 4.112 11 C -0.139 4.139 12 C -0.144 4.144 13 C -0.138 4.138 14 C 0.107 3.893 15 C -0.152 4.152 16 C 0.184 3.816 17 H 0.047 0.953 18 N -0.721 5.721 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.949 -3.826 -15.718 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.003 4.003 5 N -0.341 5.341 6 C 0.301 3.699 7 O -0.431 6.431 8 C -0.178 4.178 9 C -0.131 4.131 10 C -0.130 4.130 11 C -0.177 4.177 12 C -0.182 4.182 13 C -0.175 4.175 14 C -0.016 4.016 15 C -0.194 4.194 16 C 0.074 3.926 17 H 0.065 0.935 18 N -0.361 5.361 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.639 -3.694 -16.077 21.405 hybrid contribution -0.120 -0.214 1.213 1.238 sum 13.519 -3.908 -14.864 20.469 Atomic orbital electron populations 1.21658 0.94175 1.01730 1.01816 1.21737 0.96544 1.00016 0.94670 0.91336 1.21685 0.78757 1.00653 0.99249 1.48211 1.07150 1.60461 1.18251 1.20722 0.89566 0.77299 0.82324 1.90658 1.75746 1.45275 1.31401 1.21694 0.91847 1.03265 1.00988 1.21330 0.92998 1.02091 0.96647 1.22594 0.94531 0.98704 0.97197 1.23006 0.97640 0.98699 0.98312 1.22810 0.96818 1.00910 0.97638 1.22936 0.97707 1.00509 0.96354 1.21868 0.97667 0.97302 0.84805 1.22688 1.00408 1.00405 0.95850 1.20188 0.90350 0.95665 0.86420 0.93471 1.42415 1.76481 1.11455 1.05745 1.19211 1.35878 0.94106 0.87687 0.91255 1.24731 1.02095 0.96032 0.98050 1.69658 1.49993 1.09526 1.28869 0.86224 0.77269 0.78900 0.83993 1.21792 1.21825 1.20804 0.93081 0.90774 0.93850 0.91773 0.89482 0.88882 0.89185 0.91247 0.91151 0.89283 0.90004 0.91541 0.90392 0.91662 0.91716 0.90052 0.91557 0.90414 0.90608 0.92211 0.78228 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.03 37.16 0.34 -1.90 16 2 C -0.11 -1.82 2.46 -90.50 -0.22 -2.05 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.12 1.77 5.72 -3.71 -0.02 1.75 16 5 N -0.61 -8.52 2.97 -172.77 -0.51 -9.04 16 6 C 0.51 7.27 7.70 -10.98 -0.08 7.18 16 7 O -0.55 -9.65 15.40 5.56 0.09 -9.56 16 8 C -0.14 -1.42 4.04 -27.88 -0.11 -1.53 16 9 C -0.09 -0.93 4.34 -26.73 -0.12 -1.04 16 10 C -0.11 -0.90 3.65 -89.81 -0.33 -1.23 16 11 C -0.14 -1.10 7.63 -25.92 -0.20 -1.30 16 12 C -0.14 -1.03 8.08 -25.92 -0.21 -1.24 16 13 C -0.14 -1.04 7.64 -25.92 -0.20 -1.24 16 14 C 0.11 1.35 6.34 -3.71 -0.02 1.33 16 15 C -0.15 -2.49 5.66 -26.61 -0.15 -2.64 16 16 C 0.18 3.45 2.19 -67.89 -0.15 3.30 16 17 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 18 N -0.72 -17.19 4.41 -53.38 -0.24 -17.42 16 19 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 20 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 23 Si 0.90 21.92 29.55 -169.99 -5.02 16.89 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.36 7.01 -51.93 -0.36 0.99 16 32 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 33 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 34 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.07 0.80 7.80 -51.93 -0.41 0.39 16 36 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.08 0.69 7.89 -51.93 -0.41 0.28 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.38 9.92 7.50 -40.82 -0.31 9.62 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -30.40 373.86 -9.92 -40.32 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.87 Total: 7.60 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.72 Total: -7.55 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.02 Total: -53.33 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.40 -9.92 -40.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035977531.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.679 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds