Wall clock time and date at job start Fri Apr 10 2020 20:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.49424 * 2 1 4 4 C 1.53188 * 109.49600 * 120.06335 * 2 1 3 5 5 N 1.46929 * 108.77150 * 174.61673 * 4 2 1 6 6 C 1.34777 * 120.62976 * 126.37270 * 5 4 2 7 7 O 1.21281 * 119.99979 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00178 * 180.02562 * 6 5 4 9 9 C 1.53776 * 113.61438 * 66.03720 * 8 6 5 10 10 C 1.53773 * 87.08106 * 89.20182 * 9 8 6 11 11 C 1.53003 * 113.61455 * 139.98371 * 10 9 8 12 12 C 1.53004 * 113.61719 * 270.88265 * 10 9 8 13 13 C 1.53780 * 113.69173 * 163.57508 * 8 6 5 14 14 C 1.46923 * 118.74011 * 306.64274 * 5 4 2 15 15 C 1.52762 * 109.00585 * 53.31179 * 14 5 4 16 16 C 1.53036 * 109.52186 * 239.91885 * 2 1 3 17 17 H 1.08998 * 109.46264 * 298.67375 * 16 2 1 18 18 N 1.46505 * 109.46124 * 58.64873 * 16 2 1 19 19 C 1.36937 * 119.99858 * 205.00437 * 18 16 2 20 20 H 1.07995 * 119.99992 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99678 * 180.02562 * 19 18 16 22 22 N 1.31622 * 120.00421 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99934 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47558 * 89.99492 * 23 21 19 25 25 H 1.48507 * 109.47171 * 209.99869 * 23 21 19 26 26 H 1.48504 * 109.46790 * 329.99142 * 23 21 19 27 27 H 1.09003 * 109.46466 * 299.93783 * 1 2 3 28 28 H 1.09003 * 109.47213 * 59.93152 * 1 2 3 29 29 H 1.08997 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.58739 * 54.83722 * 4 2 1 31 31 H 1.09002 * 109.59054 * 294.40337 * 4 2 1 32 32 H 1.09003 * 112.84707 * 294.83918 * 8 6 5 33 33 H 1.09002 * 113.61463 * 334.64754 * 9 8 6 34 34 H 1.09004 * 113.68991 * 203.76252 * 9 8 6 35 35 H 1.08995 * 109.47318 * 59.99609 * 11 10 9 36 36 H 1.09001 * 109.46848 * 180.02562 * 11 10 9 37 37 H 1.09010 * 109.46716 * 299.99254 * 11 10 9 38 38 H 1.09001 * 109.47093 * 53.23958 * 12 10 9 39 39 H 1.08996 * 109.47573 * 173.24089 * 12 10 9 40 40 H 1.08998 * 109.46987 * 293.24734 * 12 10 9 41 41 H 1.08997 * 113.61381 * 156.32297 * 13 8 6 42 42 H 1.09002 * 113.61362 * 25.41786 * 13 8 6 43 43 H 1.09003 * 109.58596 * 173.14318 * 14 5 4 44 44 H 1.08998 * 109.58681 * 293.57025 * 14 5 4 45 45 H 1.09004 * 109.56355 * 185.55196 * 15 14 5 46 46 H 1.08999 * 109.38704 * 65.51264 * 15 14 5 47 47 H 0.97001 * 120.00162 * 24.99551 * 18 16 2 48 48 H 0.96998 * 120.00408 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5047 -0.8281 1.1701 6 6 4.2808 -0.3841 2.1786 7 8 3.7724 0.1079 3.1637 8 6 5.7804 -0.4980 2.0817 9 6 6.3942 0.3749 0.9744 10 6 6.4958 1.4953 2.0227 11 6 7.7918 2.3035 1.9324 12 6 5.2481 2.3775 2.0998 13 6 6.5337 0.3874 3.0885 14 6 4.1062 -1.4204 -0.0324 15 6 3.5715 -0.6942 -1.2654 16 6 2.0415 -0.7230 -1.2481 17 1 1.6981 -1.7573 -1.2350 18 7 1.5272 -0.0531 -2.4453 19 6 1.3976 -0.7496 -3.6172 20 1 1.6749 -1.7925 -3.6590 21 6 0.9109 -0.1148 -4.7516 22 7 0.5734 1.1564 -4.7008 23 14 0.7347 -1.0647 -6.3504 24 1 -0.6164 -1.6772 -6.4162 25 1 0.9154 -0.1398 -7.4982 26 1 1.7655 -2.1322 -6.4080 27 1 -0.3632 0.5129 0.8906 28 1 -0.3634 0.5149 -0.8894 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6058 -1.7215 1.2982 31 1 1.7634 -0.1576 2.1390 32 1 6.1262 -1.5316 2.0651 33 1 5.7034 0.5987 0.1615 34 1 7.3618 0.0182 0.6214 35 1 7.8613 2.7701 0.9498 36 1 7.7932 3.0750 2.7024 37 1 8.6444 1.6407 2.0812 38 1 4.3679 1.7505 2.2422 39 1 5.3421 3.0675 2.9384 40 1 5.1452 2.9430 1.1737 41 1 7.5394 0.0331 3.3145 42 1 5.9553 0.6214 3.9823 43 1 5.1902 -1.3143 0.0110 44 1 3.8424 -2.4764 -0.0907 45 1 3.9345 -1.1888 -2.1664 46 1 3.9160 0.3399 -1.2541 47 1 1.2784 0.8837 -2.4078 48 1 0.2329 1.5999 -5.4934 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036017975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:12 Heat of formation + Delta-G solvation = -14.021596 kcal Electronic energy + Delta-G solvation = -25493.201540 eV Core-core repulsion = 22162.533262 eV Total energy + Delta-G solvation = -3330.668278 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.16661 -38.75353 -37.20247 -34.62809 -32.91131 -31.50791 -30.93163 -29.32252 -27.44490 -26.75878 -25.73574 -25.17191 -23.51794 -22.49166 -21.63248 -19.85434 -19.08040 -18.06659 -17.08442 -16.88341 -16.00187 -15.72541 -15.00571 -14.50599 -14.36395 -14.12384 -14.05400 -13.74407 -13.47038 -13.30901 -12.91177 -12.76512 -12.57217 -12.44058 -12.21064 -11.90433 -11.70369 -11.59375 -11.56419 -11.29473 -11.10521 -10.94658 -10.88086 -10.73854 -10.62179 -10.40641 -10.21412 -10.15392 -10.05445 -9.77019 -9.62725 -9.56288 -8.91771 -8.43914 -6.98035 -5.79254 -3.07938 2.69007 3.10472 3.40890 3.46230 3.47889 4.33165 4.43743 4.45685 4.55827 4.58714 4.89856 5.10214 5.17769 5.25483 5.30074 5.38140 5.43359 5.52198 5.52552 5.53975 5.61673 5.65060 5.68879 5.75841 5.77875 5.85537 5.88280 5.92496 5.96750 6.07116 6.11197 6.13530 6.18510 6.30224 6.32884 6.37752 6.43123 6.46822 6.55362 6.65613 6.80984 6.92232 7.04957 7.55285 7.66860 8.28170 8.38968 9.50462 10.08047 10.42917 11.43231 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.004055 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.331691 B = 6903.174004 C = 7413.699880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.603 5.603 6 C 0.537 3.463 7 O -0.546 6.546 8 C -0.138 4.138 9 C -0.126 4.126 10 C -0.086 4.086 11 C -0.135 4.135 12 C -0.146 4.146 13 C -0.114 4.114 14 C 0.103 3.897 15 C -0.152 4.152 16 C 0.184 3.816 17 H 0.047 0.953 18 N -0.720 5.720 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.799 -2.668 13.996 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.004 4.004 5 N -0.335 5.335 6 C 0.326 3.674 7 O -0.425 6.425 8 C -0.159 4.159 9 C -0.163 4.163 10 C -0.086 4.086 11 C -0.192 4.192 12 C -0.203 4.203 13 C -0.152 4.152 14 C -0.020 4.020 15 C -0.193 4.193 16 C 0.074 3.926 17 H 0.065 0.935 18 N -0.361 5.361 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.502 -2.534 14.344 18.559 hybrid contribution -0.092 -0.271 -1.176 1.210 sum 11.410 -2.805 13.168 17.648 Atomic orbital electron populations 1.21659 0.94163 1.01741 1.01815 1.21731 0.96538 1.00001 0.94636 0.91320 1.21714 0.78594 1.00749 0.99306 1.48128 1.07019 1.60301 1.18014 1.19968 0.88415 0.76717 0.82330 1.90641 1.75311 1.44986 1.31543 1.22336 0.92282 1.00933 1.00363 1.23189 1.01286 0.95499 0.96341 1.21806 0.96211 0.94199 0.96351 1.21724 0.95931 0.99780 1.01746 1.21895 0.97434 0.99697 1.01298 1.22964 0.99695 0.94965 0.97568 1.21869 0.98095 0.97299 0.84709 1.22607 1.00394 1.00426 0.95851 1.20185 0.90355 0.95659 0.86419 0.93485 1.42408 1.76485 1.11433 1.05740 1.19214 1.35941 0.94099 0.87704 0.91258 1.24718 1.02065 0.95984 0.98011 1.69657 1.49963 1.09492 1.28914 0.86235 0.77784 0.78686 0.83736 1.21773 1.21842 1.20812 0.93853 0.90771 0.93078 0.91683 0.89430 0.88204 0.90213 0.89170 0.92510 0.92707 0.92713 0.90248 0.92677 0.92769 0.89671 0.89968 0.89975 0.91680 0.90585 0.92203 0.78227 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.03 37.16 0.34 -1.88 16 2 C -0.11 -1.78 2.46 -90.50 -0.22 -2.01 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.12 1.73 5.72 -3.71 -0.02 1.71 16 5 N -0.60 -8.35 2.98 -173.03 -0.52 -8.87 16 6 C 0.54 7.58 5.42 -10.98 -0.06 7.52 16 7 O -0.55 -9.22 13.59 5.56 0.08 -9.15 16 8 C -0.14 -1.52 3.14 -90.96 -0.29 -1.81 16 9 C -0.13 -1.30 5.52 -25.93 -0.14 -1.45 16 10 C -0.09 -0.92 1.39 -153.70 -0.21 -1.13 16 11 C -0.13 -1.22 9.19 37.16 0.34 -0.88 16 12 C -0.15 -1.87 8.97 37.16 0.33 -1.53 16 13 C -0.11 -1.20 6.74 -25.92 -0.17 -1.37 16 14 C 0.10 1.32 5.60 -3.93 -0.02 1.30 16 15 C -0.15 -2.46 5.60 -26.83 -0.15 -2.61 16 16 C 0.18 3.42 2.20 -67.89 -0.15 3.27 16 17 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 18 N -0.72 -17.05 4.41 -53.39 -0.24 -17.29 16 19 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 23 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.41 7.37 -51.93 -0.38 1.03 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.95 6.48 -51.93 -0.34 0.62 16 34 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.43 7.94 -51.92 -0.41 0.01 16 38 H 0.08 1.20 4.03 -51.93 -0.21 0.99 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.72 7.96 -51.93 -0.41 0.30 16 42 H 0.08 1.00 7.31 -51.93 -0.38 0.63 16 43 H 0.08 0.89 4.88 -51.93 -0.25 0.64 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.06 1.03 7.75 -51.93 -0.40 0.63 16 47 H 0.38 9.85 7.50 -40.82 -0.31 9.55 16 48 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -29.65 361.41 -8.70 -38.35 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -8.50 Total: 9.17 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.68 Total: -7.75 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.03 Total: -52.90 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.65 -8.70 -38.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036017975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.330 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds