Wall clock time and date at job start Fri Apr 10 2020 20:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.52259 * 2 1 4 4 C 1.53195 * 109.49699 * 239.91685 * 2 1 3 5 5 N 1.46919 * 108.89273 * 185.48402 * 4 2 1 6 6 C 1.34783 * 120.63144 * 233.55709 * 5 4 2 7 7 O 1.21274 * 119.99655 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99922 * 179.97438 * 6 5 4 9 9 C 1.53782 * 113.61671 * 277.49965 * 8 6 5 10 10 C 1.53784 * 87.08190 * 220.02304 * 9 8 6 11 11 C 1.53002 * 113.61162 * 270.88359 * 10 9 8 12 12 C 1.53002 * 113.68933 * 139.99103 * 10 9 8 13 13 C 1.53779 * 87.08156 * 25.43241 * 10 9 8 14 14 C 1.46928 * 118.73982 * 53.53793 * 5 4 2 15 15 C 1.53191 * 108.77343 * 306.39079 * 14 5 4 16 16 C 1.53039 * 109.31416 * 54.63452 * 15 14 5 17 17 H 1.09008 * 109.45751 * 58.64369 * 16 15 14 18 18 N 1.46499 * 109.46160 * 178.61109 * 16 15 14 19 19 C 1.36935 * 120.00386 * 275.00428 * 18 16 15 20 20 H 1.08005 * 119.99844 * 359.97438 * 19 18 16 21 21 C 1.38807 * 120.00456 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99871 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00323 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47122 * 89.99789 * 23 21 19 25 25 H 1.48499 * 109.47114 * 210.00056 * 23 21 19 26 26 H 1.48501 * 109.46867 * 329.99945 * 23 21 19 27 27 H 1.09005 * 109.47207 * 180.08746 * 1 2 3 28 28 H 1.09002 * 109.47201 * 300.07916 * 1 2 3 29 29 H 1.09001 * 109.47583 * 60.08531 * 1 2 3 30 30 H 1.09002 * 109.58720 * 65.62433 * 4 2 1 31 31 H 1.08996 * 109.58651 * 305.34329 * 4 2 1 32 32 H 1.08996 * 112.84939 * 48.80706 * 8 6 5 33 33 H 1.09008 * 113.61351 * 334.56877 * 9 8 6 34 34 H 1.09000 * 113.61822 * 105.46996 * 9 8 6 35 35 H 1.09001 * 109.46957 * 157.49961 * 11 10 9 36 36 H 1.09007 * 109.46750 * 277.50063 * 11 10 9 37 37 H 1.08999 * 109.46957 * 37.49184 * 11 10 9 38 38 H 1.08991 * 109.47185 * 322.46138 * 12 10 9 39 39 H 1.09005 * 109.47066 * 82.46773 * 12 10 9 40 40 H 1.08997 * 109.46622 * 202.45963 * 12 10 9 41 41 H 1.08996 * 113.61363 * 220.02436 * 13 10 9 42 42 H 1.08994 * 113.69039 * 89.12759 * 13 10 9 43 43 H 1.08998 * 109.58787 * 66.18123 * 14 5 4 44 44 H 1.09007 * 109.58600 * 186.46436 * 14 5 4 45 45 H 1.09002 * 109.49529 * 174.58688 * 15 14 5 46 46 H 1.09001 * 109.49774 * 294.68244 * 15 14 5 47 47 H 0.97000 * 119.99467 * 94.99687 * 18 16 15 48 48 H 0.96998 * 119.99940 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5044 -0.8321 -1.1714 6 6 4.2806 -0.3909 -2.1811 7 8 3.7723 0.1015 -3.1660 8 6 5.7799 -0.5084 -2.0857 9 6 6.4370 0.6268 -1.2831 10 6 7.5553 0.6199 -2.3388 11 6 8.6988 -0.3433 -2.0139 12 6 8.0462 2.0170 -2.7233 13 6 6.5204 0.0397 -3.3171 14 6 4.1055 -1.4301 0.0285 15 6 3.5741 -0.6965 1.2639 16 6 2.0440 -0.7214 1.2483 17 1 1.6978 -1.7550 1.2363 18 7 1.5327 -0.0495 2.4455 19 6 1.4014 -0.7450 3.6178 20 1 1.6745 -1.7891 3.6596 21 6 0.9164 -0.1085 4.7519 22 7 0.5832 1.1638 4.7008 23 14 0.7367 -1.0575 6.3509 24 1 1.9947 -0.9526 7.1328 25 1 -0.3856 -0.4894 7.1402 26 1 0.4581 -2.4849 6.0506 27 1 -0.3634 -1.0277 0.0016 28 1 -0.3634 0.5151 0.8893 29 1 -0.3634 0.5125 -0.8907 30 1 1.7637 -0.1580 -2.1389 31 1 1.6033 -1.7207 -1.2993 32 1 6.1082 -1.5036 -1.7860 33 1 5.8536 1.5475 -1.2711 34 1 6.7713 0.3234 -0.2909 35 1 9.2277 -0.6019 -2.9312 36 1 9.3894 0.1341 -1.3185 37 1 8.2941 -1.2480 -1.5603 38 1 7.2012 2.7049 -2.7487 39 1 8.7735 2.3617 -1.9882 40 1 8.5140 1.9797 -3.7072 41 1 6.9218 -0.7378 -3.9670 42 1 5.9592 0.7988 -3.8619 43 1 3.8357 -2.4846 0.0856 44 1 5.1901 -1.3324 -0.0187 45 1 3.9369 -1.1913 2.1649 46 1 3.9213 0.3367 1.2508 47 1 1.2872 0.8882 2.4078 48 1 0.2446 1.6087 5.4934 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036017977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:15 Heat of formation + Delta-G solvation = -22.353930 kcal Electronic energy + Delta-G solvation = -24933.661382 eV Core-core repulsion = 21602.631787 eV Total energy + Delta-G solvation = -3331.029595 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81539 -38.94236 -37.31491 -34.57998 -32.89225 -31.48621 -30.99960 -29.29309 -27.64736 -26.75028 -25.83244 -25.16434 -23.55185 -22.51718 -21.61893 -19.76492 -18.73976 -18.33804 -17.20362 -17.05564 -15.90305 -15.40232 -14.98185 -14.76703 -14.31664 -14.22299 -13.94828 -13.75219 -13.46877 -13.30668 -13.10627 -12.89009 -12.63474 -12.40406 -12.26393 -12.04789 -11.75529 -11.68868 -11.56706 -11.26787 -11.15133 -10.95771 -10.94643 -10.79261 -10.62077 -10.47658 -10.39033 -10.26026 -10.20728 -9.75501 -9.61863 -9.47768 -8.91242 -8.41872 -6.97618 -5.78859 -3.07513 2.72725 3.16099 3.41000 3.46485 3.48145 4.24957 4.36363 4.47063 4.56057 4.58762 4.80240 5.00678 5.15477 5.22026 5.28324 5.31022 5.39035 5.41822 5.43409 5.52937 5.58275 5.62326 5.66909 5.67772 5.69890 5.72845 5.79375 5.82203 5.92935 5.97131 5.99699 6.09696 6.16231 6.18647 6.30947 6.32878 6.40913 6.44241 6.55614 6.66430 6.81678 6.93108 7.05879 7.59084 7.67144 8.32038 8.39432 9.50827 10.08539 10.43466 11.43670 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.003693 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.675928 B = 7580.804812 C = 8329.040956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.605 5.605 6 C 0.523 3.477 7 O -0.551 6.551 8 C -0.136 4.136 9 C -0.112 4.112 10 C -0.091 4.091 11 C -0.128 4.128 12 C -0.135 4.135 13 C -0.107 4.107 14 C 0.108 3.892 15 C -0.150 4.150 16 C 0.184 3.816 17 H 0.047 0.953 18 N -0.721 5.721 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.275 -3.541 -14.417 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.004 4.004 5 N -0.337 5.337 6 C 0.312 3.688 7 O -0.430 6.430 8 C -0.157 4.157 9 C -0.150 4.150 10 C -0.091 4.091 11 C -0.185 4.185 12 C -0.192 4.192 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.192 4.192 16 C 0.074 3.926 17 H 0.065 0.935 18 N -0.361 5.361 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.959 -3.412 -14.774 19.947 hybrid contribution -0.197 -0.264 1.186 1.231 sum 12.763 -3.676 -13.588 19.001 Atomic orbital electron populations 1.21653 0.94171 1.01732 1.01799 1.21732 0.96514 1.00004 0.94664 0.91370 1.21683 0.78798 1.00663 0.99247 1.48170 1.07031 1.60246 1.18224 1.20481 0.88959 0.77169 0.82221 1.90641 1.75406 1.45327 1.31586 1.22695 0.91428 1.00933 1.00632 1.23020 0.96311 0.97872 0.97798 1.21797 0.94222 0.96166 0.96907 1.21607 0.97043 0.98430 1.01463 1.21714 1.01196 0.95176 1.01125 1.22953 0.95828 1.00616 0.95113 1.21860 0.97724 0.97160 0.84812 1.22666 1.00316 1.00399 0.95786 1.20192 0.90394 0.95644 0.86407 0.93518 1.42408 1.76656 1.11311 1.05713 1.19215 1.35965 0.94040 0.87696 0.91261 1.24722 1.02078 0.96009 0.98028 1.69658 1.50123 1.09411 1.28850 0.86229 0.77273 0.78905 0.84011 1.21790 1.21835 1.20800 0.93084 0.90785 0.93848 0.89529 0.91782 0.87246 0.89554 0.90540 0.92339 0.92265 0.92364 0.92387 0.92588 0.92561 0.91280 0.88721 0.91713 0.90413 0.90659 0.92183 0.78235 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.03 37.16 0.34 -1.90 16 2 C -0.11 -1.82 2.46 -90.48 -0.22 -2.04 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.12 1.78 5.71 -3.71 -0.02 1.76 16 5 N -0.60 -8.61 2.97 -172.77 -0.51 -9.12 16 6 C 0.52 7.61 7.22 -10.98 -0.08 7.53 16 7 O -0.55 -9.78 15.31 5.56 0.09 -9.70 16 8 C -0.14 -1.49 2.37 -90.96 -0.22 -1.70 16 9 C -0.11 -1.15 6.34 -25.92 -0.16 -1.32 16 10 C -0.09 -0.80 1.39 -153.69 -0.21 -1.02 16 11 C -0.13 -0.94 9.07 37.16 0.34 -0.61 16 12 C -0.13 -1.13 9.20 37.16 0.34 -0.79 16 13 C -0.11 -1.11 6.56 -25.92 -0.17 -1.28 16 14 C 0.11 1.39 6.31 -3.71 -0.02 1.37 16 15 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 16 C 0.18 3.46 2.19 -67.87 -0.15 3.31 16 17 H 0.05 0.91 8.08 -51.92 -0.42 0.49 16 18 N -0.72 -17.20 4.41 -53.37 -0.24 -17.44 16 19 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 20 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 23 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.42 7.39 -51.93 -0.38 1.04 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.11 1.02 6.98 -51.93 -0.36 0.65 16 33 H 0.09 1.02 7.92 -51.92 -0.41 0.60 16 34 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.41 7.34 -51.93 -0.38 0.03 16 38 H 0.06 0.52 7.95 -51.93 -0.41 0.11 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.09 1.14 7.39 -51.93 -0.38 0.76 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.84 5.46 -51.92 -0.28 0.55 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.38 9.92 7.52 -40.82 -0.31 9.62 16 48 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -30.28 370.34 -8.76 -39.04 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -8.74 Total: 7.83 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.64 Total: -6.24 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.02 Total: -53.40 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.28 -8.76 -39.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036017977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.685 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds