Wall clock time and date at job start Fri Apr 10 2020 20:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.49849 * 2 1 4 4 C 1.53188 * 109.49646 * 120.06363 * 2 1 3 5 5 N 1.46929 * 108.77645 * 174.61842 * 4 2 1 6 6 C 1.34771 * 120.63182 * 126.41350 * 5 4 2 7 7 O 1.21277 * 120.00314 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00049 * 180.02562 * 6 5 4 9 9 C 1.53779 * 113.61471 * 277.49954 * 8 6 5 10 10 C 1.53786 * 87.08007 * 220.01817 * 9 8 6 11 11 C 1.52998 * 113.61146 * 270.88204 * 10 9 8 12 12 C 1.52995 * 113.69047 * 139.98928 * 10 9 8 13 13 C 1.53777 * 113.61593 * 180.02562 * 8 6 5 14 14 C 1.46930 * 118.73732 * 306.39400 * 5 4 2 15 15 C 1.53186 * 108.77576 * 53.60420 * 14 5 4 16 16 C 1.53041 * 109.52119 * 239.91713 * 2 1 3 17 17 H 1.09001 * 109.46229 * 58.65287 * 16 2 1 18 18 N 1.46493 * 109.46157 * 298.68466 * 16 2 1 19 19 C 1.36939 * 119.99933 * 155.00070 * 18 16 2 20 20 H 1.08000 * 120.00229 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00082 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99957 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00000 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47054 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47127 * 119.99601 * 23 21 19 26 26 H 1.48503 * 109.46959 * 239.99740 * 23 21 19 27 27 H 1.09000 * 109.46996 * 300.00101 * 1 2 3 28 28 H 1.09004 * 109.46831 * 60.00032 * 1 2 3 29 29 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.59171 * 294.40467 * 4 2 1 31 31 H 1.09002 * 109.58959 * 54.83166 * 4 2 1 32 32 H 1.09003 * 112.84590 * 48.80248 * 8 6 5 33 33 H 1.08998 * 113.61314 * 334.56421 * 9 8 6 34 34 H 1.08999 * 113.61492 * 105.47119 * 9 8 6 35 35 H 1.08999 * 109.47080 * 157.49986 * 11 10 9 36 36 H 1.08997 * 109.47201 * 277.49709 * 11 10 9 37 37 H 1.08999 * 109.47202 * 37.50087 * 11 10 9 38 38 H 1.08999 * 109.47301 * 322.46333 * 12 10 9 39 39 H 1.09000 * 109.47318 * 82.46711 * 12 10 9 40 40 H 1.09006 * 109.47250 * 202.46155 * 12 10 9 41 41 H 1.09002 * 113.61458 * 254.52963 * 13 8 6 42 42 H 1.08997 * 113.61826 * 25.43036 * 13 8 6 43 43 H 1.08992 * 109.58769 * 173.39532 * 14 5 4 44 44 H 1.09008 * 109.58720 * 293.81850 * 14 5 4 45 45 H 1.09000 * 109.49625 * 65.32030 * 15 14 5 46 46 H 1.09000 * 109.49684 * 185.38136 * 15 14 5 47 47 H 0.96993 * 120.00462 * 335.00610 * 18 16 2 48 48 H 0.97005 * 120.00042 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5047 -0.8281 1.1702 6 6 4.2807 -0.3849 2.1790 7 8 3.7723 0.1055 3.1648 8 6 5.7803 -0.4988 2.0822 9 6 6.3195 -1.8845 2.4748 10 6 7.4723 -1.1494 3.1789 11 6 8.6736 -0.8809 2.2702 12 6 7.8688 -1.7697 4.5201 13 6 6.5206 0.0505 3.3130 14 6 4.1060 -1.4255 -0.0300 15 6 3.5715 -0.6943 -1.2653 16 6 2.0414 -0.7230 -1.2481 17 1 1.6589 -0.2247 -2.1389 18 7 1.5796 -2.1132 -1.2305 19 6 1.4501 -2.8065 -2.4043 20 1 1.6887 -2.3286 -3.3429 21 6 1.0120 -4.1236 -2.3876 22 7 0.7217 -4.7062 -1.2437 23 14 0.8359 -5.0696 -3.9888 24 1 1.2227 -4.1956 -5.1252 25 1 1.7194 -6.2628 -3.9584 26 1 -0.5749 -5.5024 -4.1554 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.7633 -0.1576 2.1390 31 1 1.6057 -1.7214 1.2982 32 1 6.1726 -0.1285 1.1350 33 1 5.6675 -2.4293 3.1576 34 1 6.6400 -2.4855 1.6239 35 1 9.2534 -0.0493 2.6707 36 1 9.3001 -1.7715 2.2236 37 1 8.3230 -0.6305 1.2690 38 1 6.9751 -2.1192 5.0372 39 1 8.5406 -2.6104 4.3472 40 1 8.3732 -1.0215 5.1316 41 1 7.0035 1.0121 3.1390 42 1 5.9236 0.0345 4.2248 43 1 5.1901 -1.3230 0.0148 44 1 3.8387 -2.4808 -0.0859 45 1 3.9161 0.3398 -1.2535 46 1 3.9350 -1.1885 -2.1663 47 1 1.3656 -2.5425 -0.3875 48 1 0.4152 -5.6264 -1.2321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036017978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:19 Heat of formation + Delta-G solvation = -19.691223 kcal Electronic energy + Delta-G solvation = -25261.704783 eV Core-core repulsion = 21930.790652 eV Total energy + Delta-G solvation = -3330.914131 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69591 -38.94515 -37.27010 -34.21939 -32.85619 -31.40526 -30.91933 -29.15639 -27.58946 -26.62799 -25.73724 -25.16080 -23.55830 -23.00053 -21.62144 -19.30328 -18.31392 -18.10296 -17.37840 -16.90776 -15.72769 -15.37671 -14.85883 -14.46640 -14.40308 -14.16679 -13.98153 -13.80498 -13.38050 -13.21263 -12.95764 -12.78760 -12.68948 -12.50103 -12.18357 -11.95468 -11.70085 -11.50814 -11.39273 -11.18617 -11.10853 -10.94031 -10.87808 -10.77559 -10.48924 -10.46754 -10.30601 -10.18159 -10.15925 -9.82714 -9.55451 -9.32086 -8.93925 -8.15858 -6.98233 -5.80165 -3.08478 2.89248 3.36118 3.40158 3.46500 3.48389 4.32723 4.46032 4.56382 4.57712 4.69143 4.91903 5.09463 5.27278 5.30746 5.37667 5.38722 5.47245 5.50423 5.56193 5.60798 5.65405 5.71192 5.74883 5.76155 5.80046 5.84152 5.86778 5.96116 6.00835 6.03775 6.09376 6.11667 6.26415 6.27493 6.33400 6.40048 6.44687 6.51813 6.67042 6.69923 6.78511 6.94888 7.03990 7.68025 7.81082 8.38379 8.49391 9.50123 10.07215 10.42369 11.42315 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.004215 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.270869 B = 6640.983343 C = 7478.783160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.521 3.479 7 O -0.557 6.557 8 C -0.135 4.135 9 C -0.113 4.113 10 C -0.091 4.091 11 C -0.128 4.128 12 C -0.134 4.134 13 C -0.107 4.107 14 C 0.116 3.884 15 C -0.151 4.151 16 C 0.179 3.821 17 H 0.050 0.950 18 N -0.719 5.719 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.903 3.097 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.384 0.616 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.719 8.743 6.730 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.330 5.330 6 C 0.310 3.690 7 O -0.436 6.436 8 C -0.156 4.156 9 C -0.150 4.150 10 C -0.091 4.091 11 C -0.185 4.185 12 C -0.192 4.192 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.192 4.192 16 C 0.068 3.932 17 H 0.068 0.932 18 N -0.361 5.361 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.219 0.781 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.422 8.923 7.058 16.844 hybrid contribution -0.217 -0.817 -0.879 1.219 sum 12.205 8.106 6.179 15.902 Atomic orbital electron populations 1.21667 0.94297 1.03151 1.00380 1.21696 0.96448 0.98800 0.95847 0.91740 1.21627 0.78961 1.01399 0.98449 1.48129 1.06978 1.59691 1.18236 1.20428 0.88943 0.77270 0.82405 1.90627 1.75459 1.45969 1.31510 1.22678 0.91979 1.00012 1.00918 1.23009 0.96791 0.94521 1.00714 1.21787 0.94300 0.96961 0.96070 1.21602 0.96511 1.01573 0.98843 1.21713 1.01427 1.00249 0.95774 1.22940 0.96441 0.97185 0.97923 1.21710 0.96390 0.98905 0.83662 1.22532 1.00509 0.98588 0.97548 1.20206 0.90790 0.87345 0.94812 0.93217 1.42482 1.78974 1.07691 1.06948 1.19268 1.37063 0.93863 0.86605 0.91222 1.24696 1.02303 0.97180 0.96564 1.69661 1.51771 1.12999 1.23608 0.86177 0.77291 0.79982 0.83077 1.20646 1.21988 1.21986 0.93806 0.92852 0.91060 0.89957 0.90818 0.87249 0.89610 0.90611 0.92380 0.92326 0.92325 0.92412 0.92653 0.92600 0.91352 0.88761 0.91206 0.89822 0.93407 0.90820 0.78092 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.06 37.16 0.34 -1.91 16 2 C -0.11 -1.80 2.67 -90.50 -0.24 -2.04 16 3 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 2.05 5.42 -3.71 -0.02 2.03 16 5 N -0.60 -9.83 2.97 -172.77 -0.51 -10.34 16 6 C 0.52 8.44 7.22 -10.99 -0.08 8.36 16 7 O -0.56 -10.68 15.31 5.56 0.09 -10.59 16 8 C -0.13 -1.67 2.39 -90.96 -0.22 -1.89 16 9 C -0.11 -1.28 6.60 -25.92 -0.17 -1.45 16 10 C -0.09 -0.88 1.39 -153.72 -0.21 -1.10 16 11 C -0.13 -1.05 9.07 37.16 0.34 -0.71 16 12 C -0.13 -1.20 9.19 37.16 0.34 -0.86 16 13 C -0.11 -1.22 6.55 -25.94 -0.17 -1.39 16 14 C 0.12 1.83 6.08 -3.71 -0.02 1.81 16 15 C -0.15 -2.47 5.78 -26.61 -0.15 -2.62 16 16 C 0.18 3.34 2.53 -67.89 -0.17 3.16 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 N -0.72 -16.47 3.64 -53.39 -0.19 -16.66 16 19 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 23 Si 0.90 21.67 29.55 -169.99 -5.02 16.64 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.35 7.54 -51.93 -0.39 0.95 16 30 H 0.08 1.45 7.01 -51.93 -0.36 1.09 16 31 H 0.07 1.42 6.64 -51.93 -0.34 1.07 16 32 H 0.11 1.21 6.72 -51.93 -0.35 0.86 16 33 H 0.09 1.08 7.92 -51.93 -0.41 0.67 16 34 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.47 7.34 -51.93 -0.38 0.09 16 38 H 0.06 0.55 7.95 -51.93 -0.41 0.14 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.09 1.23 7.39 -51.93 -0.38 0.85 16 43 H 0.07 0.91 5.69 -51.93 -0.30 0.62 16 44 H 0.08 1.57 7.74 -51.92 -0.40 1.17 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.38 9.47 5.92 -40.82 -0.24 9.23 16 48 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -29.28 366.80 -8.68 -37.95 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -8.59 Total: 9.02 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.69 Total: -5.29 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.02 Total: -53.26 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.28 -8.68 -37.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036017978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.264 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds