Wall clock time and date at job start Fri Apr 10 2020 20:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.52109 * 2 1 4 4 C 1.53187 * 109.49822 * 239.92268 * 2 1 3 5 5 N 1.46919 * 108.77541 * 185.41162 * 4 2 1 6 6 C 1.34787 * 120.62900 * 233.58138 * 5 4 2 7 7 O 1.21277 * 119.99654 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99680 * 180.02562 * 6 5 4 9 9 C 1.53778 * 113.61248 * 180.02562 * 8 6 5 10 10 C 1.53773 * 87.08429 * 220.01915 * 9 8 6 11 11 C 1.52997 * 113.61817 * 139.98076 * 10 9 8 12 12 C 1.53006 * 113.61373 * 270.80132 * 10 9 8 13 13 C 1.53775 * 113.61273 * 82.50465 * 8 6 5 14 14 C 1.46926 * 118.73985 * 53.85841 * 5 4 2 15 15 C 1.53625 * 108.54167 * 306.09504 * 14 5 4 16 16 C 1.53034 * 109.24309 * 54.85640 * 15 14 5 17 17 H 1.08995 * 109.44918 * 178.50035 * 16 15 14 18 18 N 1.46495 * 109.46245 * 58.52925 * 16 15 14 19 19 C 1.36937 * 119.99867 * 84.93014 * 18 16 15 20 20 H 1.07998 * 120.00189 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00298 * 180.02562 * 19 18 16 22 22 N 1.31627 * 119.99834 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00171 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47222 * 90.00117 * 23 21 19 25 25 H 1.48507 * 109.46852 * 209.99596 * 23 21 19 26 26 H 1.48494 * 109.46935 * 329.99789 * 23 21 19 27 27 H 1.08999 * 109.46684 * 180.08262 * 1 2 3 28 28 H 1.09000 * 109.46804 * 300.07640 * 1 2 3 29 29 H 1.08995 * 109.46993 * 60.08417 * 1 2 3 30 30 H 1.08998 * 109.58699 * 65.62137 * 4 2 1 31 31 H 1.09006 * 109.58704 * 305.19728 * 4 2 1 32 32 H 1.08998 * 112.90624 * 311.24891 * 8 6 5 33 33 H 1.09001 * 113.61374 * 105.46299 * 9 8 6 34 34 H 1.09003 * 113.61173 * 334.57122 * 9 8 6 35 35 H 1.09002 * 109.47153 * 59.99965 * 11 10 9 36 36 H 1.09001 * 109.46832 * 300.00156 * 11 10 9 37 37 H 1.09004 * 109.47261 * 180.02562 * 11 10 9 38 38 H 1.08995 * 109.46975 * 298.46814 * 12 10 9 39 39 H 1.09005 * 109.46841 * 58.46708 * 12 10 9 40 40 H 1.09002 * 109.47267 * 178.46664 * 12 10 9 41 41 H 1.08995 * 113.61753 * 25.43408 * 13 8 6 42 42 H 1.08997 * 113.61771 * 254.52216 * 13 8 6 43 43 H 1.09002 * 109.58968 * 65.93064 * 14 5 4 44 44 H 1.09006 * 109.58641 * 186.35575 * 14 5 4 45 45 H 1.09000 * 109.63080 * 294.86271 * 15 14 5 46 46 H 1.09000 * 109.45598 * 174.74145 * 15 14 5 47 47 H 0.96999 * 120.00224 * 264.93495 * 18 16 15 48 48 H 0.96999 * 119.99579 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7237 -1.2496 5 7 3.5046 -0.8290 -1.1696 6 6 4.2811 -0.3862 -2.1784 7 8 3.7731 0.1051 -3.1639 8 6 5.7806 -0.5018 -2.0816 9 6 6.5215 0.0484 -3.3118 10 6 7.4719 -1.1532 -3.1789 11 6 7.8661 -1.7741 -4.5205 12 6 8.6746 -0.8859 -2.2716 13 6 6.3182 -1.8878 -2.4748 14 6 4.1051 -1.4316 0.0283 15 6 3.5709 -0.6949 1.2660 16 6 2.0409 -0.7230 1.2483 17 1 1.6585 -0.2243 2.1389 18 7 1.5785 -2.1130 1.2308 19 6 1.4484 -2.8062 2.4045 20 1 1.6863 -2.3281 3.3432 21 6 1.0107 -4.1234 2.3879 22 7 0.7212 -4.7063 1.2438 23 14 0.8325 -5.0687 3.9892 24 1 -0.5395 -4.8805 4.5252 25 1 1.0730 -6.5130 3.7407 26 1 1.8225 -4.5644 4.9745 27 1 -0.3633 -1.0277 0.0015 28 1 -0.3633 0.5150 0.8893 29 1 -0.3633 0.5125 -0.8907 30 1 1.7638 -0.1578 -2.1388 31 1 1.6054 -1.7216 -1.2981 32 1 6.1742 -0.1333 -1.1343 33 1 7.0052 1.0093 -3.1365 34 1 5.9243 0.0341 -4.2236 35 1 8.3706 -1.0265 -5.1326 36 1 6.9714 -2.1226 -5.0364 37 1 8.5369 -2.6159 -4.3482 38 1 9.2697 -0.0729 -2.6874 39 1 8.3249 -0.6085 -1.2771 40 1 9.2858 -1.7859 -2.2039 41 1 5.6657 -2.4316 -3.1578 42 1 6.6382 -2.4895 -1.6242 43 1 3.8340 -2.4861 0.0819 44 1 5.1897 -1.3330 -0.0176 45 1 3.9160 0.3390 1.2540 46 1 3.9335 -1.1891 2.1673 47 1 1.3645 -2.5423 0.3877 48 1 0.4150 -5.6266 1.2323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036017979.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:22 Heat of formation + Delta-G solvation = -19.636931 kcal Electronic energy + Delta-G solvation = -25261.127695 eV Core-core repulsion = 21930.215918 eV Total energy + Delta-G solvation = -3330.911777 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69052 -38.93583 -37.26493 -34.21612 -32.85108 -31.38970 -30.91646 -29.14163 -27.58955 -26.62676 -25.73742 -25.15663 -23.55718 -22.99794 -21.61938 -19.29905 -18.31344 -18.10445 -17.37785 -16.90669 -15.72621 -15.37548 -14.85842 -14.46283 -14.40090 -14.16639 -13.97571 -13.80042 -13.37662 -13.20741 -12.95315 -12.78489 -12.68830 -12.49719 -12.17896 -11.95682 -11.70304 -11.50595 -11.38675 -11.19009 -11.10881 -10.92789 -10.87553 -10.77355 -10.48795 -10.46481 -10.30376 -10.19744 -10.17657 -9.82551 -9.54985 -9.31956 -8.93380 -8.15535 -6.98079 -5.79845 -3.08193 2.89272 3.36298 3.40668 3.46420 3.47796 4.32731 4.45963 4.56590 4.57773 4.69213 4.92016 5.09523 5.27604 5.30833 5.37893 5.38926 5.47264 5.50332 5.56162 5.60794 5.65280 5.71229 5.74875 5.76298 5.80000 5.83701 5.86723 5.96180 6.00844 6.03833 6.09522 6.11904 6.26392 6.27549 6.33412 6.40102 6.44906 6.51938 6.67286 6.70172 6.78695 6.95030 7.04149 7.67670 7.81174 8.38739 8.49450 9.50354 10.07426 10.42618 11.42571 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.004215 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.153787 B = 6640.912449 C = 7478.893848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.521 3.479 7 O -0.556 6.556 8 C -0.135 4.135 9 C -0.107 4.107 10 C -0.091 4.091 11 C -0.134 4.134 12 C -0.128 4.128 13 C -0.113 4.113 14 C 0.116 3.884 15 C -0.150 4.150 16 C 0.179 3.821 17 H 0.050 0.950 18 N -0.718 5.718 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.283 1.283 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.731 8.688 -6.747 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.331 5.331 6 C 0.310 3.690 7 O -0.436 6.436 8 C -0.156 4.156 9 C -0.145 4.145 10 C -0.091 4.091 11 C -0.192 4.192 12 C -0.185 4.185 13 C -0.150 4.150 14 C -0.007 4.007 15 C -0.191 4.191 16 C 0.068 3.932 17 H 0.068 0.932 18 N -0.361 5.361 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.581 5.581 23 Si 0.735 3.265 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.209 1.209 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.440 8.860 -7.079 16.833 hybrid contribution -0.225 -0.807 0.888 1.221 sum 12.215 8.054 -6.191 15.887 Atomic orbital electron populations 1.21667 0.94301 1.03158 1.00373 1.21696 0.96439 0.98800 0.95851 0.91739 1.21625 0.78964 1.01392 0.98451 1.48134 1.06986 1.59575 1.18356 1.20432 0.88937 0.77293 0.82386 1.90627 1.75470 1.45956 1.31510 1.22676 0.91982 1.00002 1.00924 1.22945 0.96445 0.97176 0.97930 1.21803 0.94295 0.96944 0.96070 1.21713 1.01438 1.00246 0.95772 1.21600 0.96497 1.01579 0.98845 1.23014 0.96796 0.94522 1.00717 1.21803 0.96402 0.98801 0.83665 1.22604 1.00482 0.98538 0.97522 1.20204 0.90804 0.87348 0.94804 0.93230 1.42475 1.78965 1.07716 1.06928 1.19221 1.37204 0.93860 0.86582 0.91284 1.24697 1.02297 0.97166 0.96560 1.69654 1.51715 1.13055 1.23638 0.86244 0.77760 0.79379 0.83103 1.21841 1.21896 1.20854 0.91056 0.92860 0.93805 0.89957 0.90826 0.87252 0.91346 0.88763 0.92600 0.92414 0.92652 0.92378 0.92331 0.92322 0.89610 0.90609 0.89798 0.91198 0.93383 0.90857 0.78090 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.06 37.16 0.34 -1.91 16 2 C -0.11 -1.80 2.67 -90.50 -0.24 -2.04 16 3 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 2.05 5.42 -3.72 -0.02 2.03 16 5 N -0.60 -9.83 2.97 -172.50 -0.51 -10.34 16 6 C 0.52 8.44 7.22 -10.98 -0.08 8.36 16 7 O -0.56 -10.68 15.31 5.56 0.09 -10.59 16 8 C -0.13 -1.67 2.39 -90.96 -0.22 -1.88 16 9 C -0.11 -1.22 6.56 -25.92 -0.17 -1.39 16 10 C -0.09 -0.88 1.39 -153.67 -0.21 -1.10 16 11 C -0.13 -1.20 9.19 37.16 0.34 -0.86 16 12 C -0.13 -1.05 9.07 37.16 0.34 -0.71 16 13 C -0.11 -1.28 6.60 -25.90 -0.17 -1.45 16 14 C 0.12 1.83 6.11 -3.49 -0.02 1.81 16 15 C -0.15 -2.47 5.79 -26.39 -0.15 -2.62 16 16 C 0.18 3.34 2.53 -67.90 -0.17 3.16 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 N -0.72 -16.47 3.63 -53.39 -0.19 -16.67 16 19 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 20 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 23 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.07 1.35 7.53 -51.93 -0.39 0.96 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 31 H 0.07 1.42 6.64 -51.93 -0.34 1.07 16 32 H 0.11 1.21 6.72 -51.93 -0.35 0.86 16 33 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.09 1.23 7.39 -51.93 -0.38 0.85 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.55 7.94 -51.93 -0.41 0.14 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.47 7.34 -51.93 -0.38 0.09 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.09 1.08 7.92 -51.93 -0.41 0.67 16 42 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 43 H 0.08 1.57 7.74 -51.93 -0.40 1.17 16 44 H 0.07 0.92 5.68 -51.93 -0.30 0.62 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.38 9.48 5.92 -40.82 -0.24 9.23 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -29.25 366.79 -8.67 -37.92 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -8.59 Total: 9.07 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.69 Total: -5.30 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.02 Total: -53.27 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.25 -8.67 -37.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036017979.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.284 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds