Wall clock time and date at job start Fri Apr 10 2020 20:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.49833 * 2 1 4 4 C 1.53192 * 109.52651 * 239.91722 * 2 1 3 5 5 N 1.46925 * 108.77380 * 185.39987 * 4 2 1 6 6 C 1.34776 * 120.63179 * 233.58469 * 5 4 2 7 7 O 1.21288 * 119.99707 * 354.88212 * 6 5 4 8 8 C 1.50696 * 120.00363 * 174.88218 * 6 5 4 9 9 C 1.52995 * 110.01982 * 65.42752 * 8 6 5 10 10 C 1.54270 * 110.03179 * 303.98318 * 8 6 5 11 11 C 1.54893 * 104.19717 * 217.10406 * 10 8 6 12 12 C 1.54894 * 102.74426 * 37.94404 * 11 10 8 13 13 C 1.53882 * 110.03364 * 186.81815 * 8 6 5 14 14 C 1.46927 * 118.74142 * 53.60502 * 5 4 2 15 15 C 1.53189 * 108.77880 * 306.39206 * 14 5 4 16 16 C 1.53042 * 109.31144 * 54.63222 * 15 14 5 17 17 H 1.09003 * 109.45144 * 58.64727 * 16 15 14 18 18 N 1.46495 * 109.46396 * 178.61338 * 16 15 14 19 19 C 1.36936 * 120.00161 * 275.07427 * 18 16 15 20 20 H 1.07993 * 120.00245 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99921 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00082 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47123 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.46889 * 299.99980 * 23 21 19 26 26 H 1.48500 * 109.46960 * 59.99877 * 23 21 19 27 27 H 1.08992 * 109.47346 * 299.93800 * 1 2 3 28 28 H 1.09002 * 109.46816 * 59.94096 * 1 2 3 29 29 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.58249 * 305.18412 * 4 2 1 31 31 H 1.08991 * 109.58637 * 65.61166 * 4 2 1 32 32 H 1.08999 * 109.47175 * 66.22842 * 9 8 6 33 33 H 1.08997 * 109.47349 * 186.23092 * 9 8 6 34 34 H 1.09011 * 109.46884 * 306.23145 * 9 8 6 35 35 H 1.09006 * 110.48478 * 335.78347 * 10 8 6 36 36 H 1.08995 * 110.48669 * 98.42639 * 10 8 6 37 37 H 1.08991 * 110.75781 * 279.63198 * 11 10 8 38 38 H 1.08997 * 110.75796 * 156.25435 * 11 10 8 39 39 H 1.09005 * 110.48100 * 203.37715 * 12 11 10 40 40 H 1.09004 * 110.60063 * 80.79346 * 12 11 10 41 41 H 1.08993 * 110.02821 * 238.56662 * 13 8 6 42 42 H 1.08999 * 110.03074 * 359.95005 * 13 8 6 43 43 H 1.09003 * 109.58542 * 66.18053 * 14 5 4 44 44 H 1.08998 * 109.58711 * 186.45975 * 14 5 4 45 45 H 1.08995 * 109.49617 * 294.68593 * 15 14 5 46 46 H 1.08991 * 109.49817 * 174.58037 * 15 14 5 47 47 H 0.97004 * 120.00085 * 95.06161 * 18 16 15 48 48 H 0.96997 * 119.99894 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5053 -0.8284 -1.1688 6 6 4.2820 -0.3854 -2.1773 7 8 3.7737 0.0194 -3.2014 8 6 5.7820 -0.3932 -2.0326 9 6 6.2909 -1.8324 -1.9310 10 6 6.1961 0.4046 -0.7788 11 6 7.5016 1.1238 -1.2003 12 6 7.2173 1.5132 -2.6723 13 6 6.4314 0.3117 -3.2365 14 6 4.1059 -1.4254 0.0318 15 6 3.5708 -0.6939 1.2668 16 6 2.0408 -0.7226 1.2487 17 1 1.6973 -1.7571 1.2355 18 7 1.5258 -0.0527 2.4453 19 6 1.3957 -0.7488 3.6173 20 1 1.6723 -1.7919 3.6594 21 6 0.9081 -0.1138 4.7513 22 7 0.5714 1.1575 4.7002 23 14 0.7300 -1.0636 6.3500 24 1 0.1926 -0.1646 7.4027 25 1 -0.2016 -2.2023 6.1479 26 1 2.0578 -1.5789 6.7702 27 1 -0.3633 0.5128 0.8905 28 1 -0.3633 0.5148 -0.8895 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6065 -1.7217 -1.2977 31 1 1.7645 -0.1581 -2.1387 32 1 6.1132 -2.3482 -2.8746 33 1 7.3595 -1.8257 -1.7162 34 1 5.7625 -2.3489 -1.1295 35 1 5.4270 1.1318 -0.5182 36 1 6.3845 -0.2690 0.0570 37 1 8.3533 0.4466 -1.1374 38 1 7.6673 2.0122 -0.5908 39 1 8.1511 1.6485 -3.2181 40 1 6.6141 2.4199 -2.7195 41 1 7.1097 -0.3714 -3.7477 42 1 5.6616 0.6586 -3.9258 43 1 3.8387 -2.4807 0.0879 44 1 5.1903 -1.3251 -0.0136 45 1 3.9154 0.3401 1.2548 46 1 3.9333 -1.1883 2.1680 47 1 1.2770 0.8842 2.4075 48 1 0.2311 1.6013 5.4927 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036123619.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:26 Heat of formation + Delta-G solvation = -36.175604 kcal Electronic energy + Delta-G solvation = -25559.207345 eV Core-core repulsion = 22227.578398 eV Total energy + Delta-G solvation = -3331.628947 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87705 -38.24813 -37.07576 -34.68590 -33.01187 -31.54355 -31.19349 -29.31329 -28.84789 -26.43476 -25.82428 -24.86660 -22.96353 -21.69830 -21.13366 -20.80080 -19.54779 -18.44833 -17.08905 -16.85161 -16.08439 -15.36316 -15.03169 -14.92981 -14.41770 -14.09563 -14.00255 -13.69542 -13.54926 -13.28683 -13.06896 -12.83318 -12.51124 -12.27391 -12.10493 -11.81187 -11.69815 -11.59402 -11.23355 -11.13552 -11.00287 -10.96275 -10.92191 -10.80828 -10.71993 -10.58868 -10.49719 -10.34351 -10.23684 -9.74755 -9.61979 -9.43576 -8.89856 -8.41609 -6.97421 -5.78702 -3.07348 2.74410 3.14385 3.41458 3.46372 3.47295 4.29365 4.40141 4.56419 4.56874 4.84664 5.06222 5.12156 5.15773 5.22551 5.28296 5.32786 5.34770 5.39172 5.51251 5.53799 5.59424 5.65597 5.68033 5.70844 5.73926 5.80609 5.84079 5.90128 5.96758 6.02528 6.09077 6.11716 6.16908 6.20274 6.26057 6.32973 6.41345 6.44092 6.55961 6.66508 6.81742 6.93237 7.05957 7.59260 7.66784 8.30868 8.39589 9.50926 10.08655 10.43573 11.43741 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.004081 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.980080 B = 6859.189433 C = 7424.586872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.525 3.475 7 O -0.550 6.550 8 C -0.083 4.083 9 C -0.148 4.148 10 C -0.116 4.116 11 C -0.123 4.123 12 C -0.124 4.124 13 C -0.113 4.113 14 C 0.089 3.911 15 C -0.151 4.151 16 C 0.184 3.816 17 H 0.047 0.953 18 N -0.720 5.720 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.292 1.292 25 H -0.286 1.286 26 H -0.287 1.287 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.420 -3.752 -13.693 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.003 4.003 5 N -0.334 5.334 6 C 0.313 3.687 7 O -0.429 6.429 8 C -0.086 4.086 9 C -0.205 4.205 10 C -0.153 4.153 11 C -0.161 4.161 12 C -0.162 4.162 13 C -0.151 4.151 14 C -0.034 4.034 15 C -0.193 4.193 16 C 0.074 3.926 17 H 0.065 0.935 18 N -0.361 5.361 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.100 -3.663 -14.070 18.915 hybrid contribution -0.211 -0.229 1.131 1.173 sum 11.889 -3.892 -12.939 17.997 Atomic orbital electron populations 1.21656 0.94175 1.01732 1.01805 1.21735 0.96523 0.99972 0.94691 0.91370 1.21693 0.78741 1.00691 0.99167 1.48060 1.06902 1.60216 1.18185 1.20497 0.89121 0.76402 0.82665 1.90620 1.75337 1.48224 1.28670 1.21357 0.91727 0.97653 0.97863 1.22133 1.01777 0.93725 1.02855 1.22650 0.97981 0.98994 0.95702 1.22504 0.97221 1.00128 0.96241 1.22359 0.99709 0.98261 0.95827 1.22222 0.99586 0.96734 0.96566 1.22370 0.99101 0.97098 0.84820 1.22689 1.00327 1.00418 0.95829 1.20187 0.90418 0.95626 0.86390 0.93533 1.42400 1.76485 1.11433 1.05754 1.19168 1.36015 0.94081 0.87739 0.91324 1.24717 1.02045 0.95995 0.98006 1.69647 1.49936 1.09482 1.28992 0.86308 0.77732 0.78733 0.83638 1.21749 1.21316 1.21337 0.90771 0.93866 0.93085 0.91780 0.89570 0.92149 0.91367 0.91107 0.90776 0.90208 0.91363 0.91302 0.91700 0.91608 0.91488 0.89434 0.91782 0.88630 0.92141 0.90699 0.78236 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.03 37.16 0.34 -1.90 16 2 C -0.11 -1.81 2.46 -90.50 -0.22 -2.03 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.12 1.79 5.70 -3.71 -0.02 1.77 16 5 N -0.60 -8.56 2.97 -172.78 -0.51 -9.07 16 6 C 0.53 7.71 6.35 -10.99 -0.07 7.64 16 7 O -0.55 -9.78 14.67 5.55 0.08 -9.70 16 8 C -0.08 -0.94 0.61 -154.54 -0.09 -1.03 16 9 C -0.15 -1.37 7.85 37.15 0.29 -1.08 16 10 C -0.12 -1.24 4.54 -25.07 -0.11 -1.35 16 11 C -0.12 -1.12 6.91 -24.73 -0.17 -1.29 16 12 C -0.12 -1.18 6.83 -25.07 -0.17 -1.35 16 13 C -0.11 -1.23 6.05 -25.61 -0.15 -1.39 16 14 C 0.09 1.15 4.47 -3.71 -0.02 1.13 16 15 C -0.15 -2.46 5.66 -26.61 -0.15 -2.62 16 16 C 0.18 3.45 2.19 -67.89 -0.15 3.30 16 17 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 18 N -0.72 -17.12 4.41 -53.39 -0.24 -17.36 16 19 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 20 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 23 Si 0.90 21.86 29.55 -169.99 -5.02 16.84 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 27 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.35 7.04 -51.93 -0.37 0.99 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.64 5.16 -51.92 -0.27 0.38 16 35 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 36 H 0.08 0.78 6.14 -51.93 -0.32 0.46 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 42 H 0.09 1.15 6.42 -51.93 -0.33 0.82 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.04 2.40 -51.93 -0.12 0.92 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.38 9.88 7.50 -40.82 -0.31 9.57 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -30.10 357.64 -8.89 -38.99 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.37 Total: 8.80 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.95 Total: -7.12 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.02 Total: -53.20 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.10 -8.89 -38.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036123619.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.818 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds