Wall clock time and date at job start Fri Apr 10 2020 20:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.49537 * 2 1 4 4 C 1.53194 * 109.49349 * 239.93641 * 2 1 3 5 5 N 1.46927 * 108.89128 * 185.30779 * 4 2 1 6 6 C 1.34778 * 120.63199 * 233.68343 * 5 4 2 7 7 O 1.21277 * 119.99673 * 354.86639 * 6 5 4 8 8 C 1.50696 * 119.99866 * 174.87258 * 6 5 4 9 9 C 1.53003 * 110.02034 * 65.31000 * 8 6 5 10 10 C 1.54264 * 110.03525 * 303.86334 * 8 6 5 11 11 C 1.54891 * 104.19890 * 217.10766 * 10 8 6 12 12 C 1.54883 * 102.74528 * 37.94256 * 11 10 8 13 13 C 1.53874 * 110.03145 * 186.69814 * 8 6 5 14 14 C 1.47210 * 118.55423 * 53.53949 * 5 4 2 15 15 C 1.53190 * 108.85313 * 306.47643 * 14 5 4 16 16 C 1.53040 * 109.52455 * 120.08178 * 2 1 3 17 17 H 1.08999 * 109.46160 * 301.35237 * 16 2 1 18 18 N 1.46503 * 109.46021 * 61.32842 * 16 2 1 19 19 C 1.36935 * 119.99487 * 204.99978 * 18 16 2 20 20 H 1.08002 * 120.00569 * 359.97438 * 19 18 16 21 21 C 1.38820 * 119.99623 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00162 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99650 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47342 * 60.00166 * 23 21 19 25 25 H 1.48506 * 109.46830 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47126 * 299.99880 * 23 21 19 27 27 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47257 * 300.06252 * 1 2 3 29 29 H 1.08997 * 109.47304 * 60.06789 * 1 2 3 30 30 H 1.09002 * 109.59072 * 305.16409 * 4 2 1 31 31 H 1.09001 * 109.58993 * 65.45218 * 4 2 1 32 32 H 1.09005 * 109.47010 * 66.20217 * 9 8 6 33 33 H 1.09000 * 109.47231 * 186.19988 * 9 8 6 34 34 H 1.08998 * 109.47025 * 306.20621 * 9 8 6 35 35 H 1.08998 * 110.48612 * 335.79232 * 10 8 6 36 36 H 1.09007 * 110.48416 * 98.42828 * 10 8 6 37 37 H 1.08997 * 110.75265 * 279.62612 * 11 10 8 38 38 H 1.09002 * 110.75250 * 156.25917 * 11 10 8 39 39 H 1.09002 * 110.48446 * 203.37452 * 12 11 10 40 40 H 1.09004 * 110.48478 * 80.73799 * 12 11 10 41 41 H 1.08994 * 110.03857 * 238.57127 * 13 8 6 42 42 H 1.09005 * 110.03336 * 0.02562 * 13 8 6 43 43 H 1.08995 * 109.53245 * 186.67491 * 14 5 4 44 44 H 1.09002 * 109.67842 * 66.36936 * 14 5 4 45 45 H 1.08999 * 109.50468 * 294.69986 * 15 14 5 46 46 H 1.09000 * 109.49526 * 174.60271 * 15 14 5 47 47 H 0.96992 * 120.00086 * 24.99466 * 18 16 2 48 48 H 0.96999 * 120.00127 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2499 5 7 3.5048 -0.8280 -1.1738 6 6 4.2785 -0.3833 -2.1838 7 8 3.7671 0.0230 -3.2057 8 6 5.7789 -0.3909 -2.0433 9 6 6.2882 -1.8301 -1.9425 10 6 6.1965 0.4075 -0.7912 11 6 7.5007 1.1266 -1.2167 12 6 7.2123 1.5152 -2.6879 13 6 6.4248 0.3134 -3.2493 14 6 4.1060 -1.4255 0.0298 15 6 3.5716 -0.6942 1.2652 16 6 2.0415 -0.7230 1.2481 17 1 1.6589 -0.2247 2.1389 18 7 1.5800 -2.1133 1.2304 19 6 1.4505 -2.8067 2.4041 20 1 1.6890 -2.3288 3.3428 21 6 1.0127 -4.1239 2.3873 22 7 0.7225 -4.7065 1.2433 23 14 0.8367 -5.0700 3.9884 24 1 -0.1402 -4.3784 4.8673 25 1 0.3569 -6.4456 3.7003 26 1 2.1541 -5.1385 4.6703 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5148 0.8894 29 1 -0.3634 0.5128 -0.8906 30 1 1.6057 -1.7215 -1.2983 31 1 1.7610 -0.1589 -2.1392 32 1 6.1074 -2.3464 -2.8853 33 1 7.3575 -1.8232 -1.7313 34 1 5.7624 -2.3461 -1.1391 35 1 5.4281 1.1346 -0.5286 36 1 6.3873 -0.2659 0.0445 37 1 8.3526 0.4494 -1.1558 38 1 7.6680 2.0152 -0.6080 39 1 8.1444 1.6504 -3.2365 40 1 6.6080 2.4214 -2.7317 41 1 7.1016 -0.3698 -3.7623 42 1 5.6529 0.6612 -3.9361 43 1 5.1901 -1.3229 -0.0150 44 1 3.8409 -2.4813 0.0870 45 1 3.9161 0.3399 1.2534 46 1 3.9347 -1.1888 2.1662 47 1 1.3661 -2.5426 0.3873 48 1 0.4163 -5.6268 1.2317 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036123620.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:29 Heat of formation + Delta-G solvation = -34.029617 kcal Electronic energy + Delta-G solvation = -25948.662276 eV Core-core repulsion = 22617.126385 eV Total energy + Delta-G solvation = -3331.535891 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.74342 -38.29392 -36.97854 -34.33378 -32.94601 -31.45508 -31.10345 -29.19566 -28.76610 -26.30154 -25.76634 -24.77019 -23.47089 -21.65045 -21.20427 -20.77881 -18.87813 -17.99973 -17.33393 -16.71117 -15.91353 -15.28630 -14.97786 -14.57714 -14.52876 -14.02837 -13.98172 -13.75203 -13.44630 -13.24285 -12.94986 -12.69237 -12.53532 -12.28104 -12.03194 -11.68434 -11.55035 -11.35727 -11.21011 -11.15140 -10.95166 -10.94045 -10.85711 -10.79282 -10.66961 -10.53080 -10.45638 -10.22532 -10.15165 -9.82948 -9.54450 -9.27853 -8.91521 -8.15378 -6.97804 -5.79378 -3.07756 2.91303 3.33547 3.41047 3.46394 3.47126 4.38308 4.49225 4.56772 4.65362 4.95612 5.16248 5.22373 5.26642 5.33739 5.35638 5.40991 5.41921 5.53380 5.56492 5.62256 5.71158 5.72066 5.78761 5.80436 5.84466 5.88663 5.91864 6.02622 6.07939 6.10242 6.12952 6.21555 6.23254 6.26754 6.31111 6.38881 6.44811 6.52089 6.67742 6.70445 6.78942 6.95143 7.04507 7.67325 7.81507 8.39119 8.48421 9.50664 10.07887 10.43063 11.42939 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.004537 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.001859 B = 6170.499305 C = 6625.089158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.064 0.936 4 C 0.118 3.882 5 N -0.597 5.597 6 C 0.523 3.477 7 O -0.555 6.555 8 C -0.081 4.081 9 C -0.149 4.149 10 C -0.114 4.114 11 C -0.124 4.124 12 C -0.123 4.123 13 C -0.114 4.114 14 C 0.098 3.902 15 C -0.150 4.150 16 C 0.179 3.821 17 H 0.049 0.951 18 N -0.718 5.718 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.924 10.770 -4.947 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.082 0.918 4 C -0.004 4.004 5 N -0.328 5.328 6 C 0.311 3.689 7 O -0.434 6.434 8 C -0.085 4.085 9 C -0.206 4.206 10 C -0.152 4.152 11 C -0.161 4.161 12 C -0.161 4.161 13 C -0.152 4.152 14 C -0.024 4.024 15 C -0.191 4.191 16 C 0.068 3.932 17 H 0.067 0.933 18 N -0.361 5.361 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.581 5.581 23 Si 0.735 3.265 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.611 10.882 -5.313 16.777 hybrid contribution -0.224 -0.861 0.786 1.187 sum 11.387 10.020 -4.527 15.830 Atomic orbital electron populations 1.21665 0.94307 1.03165 1.00357 1.21689 0.96424 0.98746 0.95872 0.91792 1.21622 0.78987 1.01449 0.98350 1.48085 1.06844 1.59596 1.18282 1.20444 0.89057 0.76638 0.82746 1.90605 1.75177 1.48782 1.28828 1.21327 0.91941 0.97659 0.97528 1.22140 1.01571 0.93709 1.03210 1.22629 0.97682 0.98847 0.96009 1.22509 0.97377 0.99967 0.96252 1.22353 0.99649 0.98261 0.95825 1.22224 0.99594 0.96648 0.96688 1.22242 0.97756 0.98733 0.83644 1.22533 1.00448 0.98605 0.97520 1.20208 0.90862 0.87344 0.94758 0.93262 1.42466 1.79014 1.07665 1.06915 1.19174 1.37310 0.93867 0.86573 0.91345 1.24695 1.02278 0.97173 0.96542 1.69638 1.51625 1.13107 1.23696 0.86323 0.77737 0.79242 0.83175 1.21383 1.21814 1.21386 0.91053 0.92856 0.93830 0.90831 0.90061 0.92115 0.91546 0.90798 0.91051 0.90235 0.91355 0.91512 0.91752 0.91731 0.91493 0.89434 0.89419 0.89957 0.93345 0.90878 0.78088 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.06 37.16 0.34 -1.90 16 2 C -0.11 -1.78 2.67 -90.50 -0.24 -2.02 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.12 2.05 5.40 -3.71 -0.02 2.03 16 5 N -0.60 -9.75 2.98 -172.54 -0.51 -10.26 16 6 C 0.52 8.52 6.35 -10.99 -0.07 8.45 16 7 O -0.55 -10.70 14.67 5.56 0.08 -10.61 16 8 C -0.08 -1.02 0.61 -154.54 -0.09 -1.12 16 9 C -0.15 -1.72 7.85 37.16 0.29 -1.43 16 10 C -0.11 -1.25 4.54 -25.07 -0.11 -1.36 16 11 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 12 C -0.12 -1.20 6.83 -25.08 -0.17 -1.37 16 13 C -0.11 -1.34 6.05 -25.61 -0.15 -1.50 16 14 C 0.10 1.54 4.22 -3.56 -0.02 1.52 16 15 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 16 C 0.18 3.31 2.53 -67.89 -0.17 3.14 16 17 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 18 N -0.72 -16.41 3.64 -53.38 -0.19 -16.60 16 19 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 20 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 23 Si 0.90 21.65 29.55 -169.99 -5.02 16.62 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H 0.07 1.35 7.54 -51.93 -0.39 0.95 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.42 6.64 -51.93 -0.34 1.08 16 31 H 0.08 1.43 7.04 -51.93 -0.37 1.07 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.91 5.16 -51.93 -0.27 0.64 16 35 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 36 H 0.08 0.82 6.14 -51.93 -0.32 0.50 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.71 7.67 -51.93 -0.40 0.31 16 42 H 0.09 1.23 6.42 -51.93 -0.33 0.90 16 43 H 0.09 1.15 2.43 -51.93 -0.13 1.02 16 44 H 0.08 1.54 7.74 -51.93 -0.40 1.14 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.38 9.47 5.92 -40.82 -0.24 9.23 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 353.77 15.07 5.33 5.33 Total: -1.00 -29.17 353.77 -8.80 -37.97 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -8.21 Total: 9.93 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.99 Total: -6.12 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.02 Total: -53.12 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.17 -8.80 -37.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036123620.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.945 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds