Wall clock time and date at job start Fri Apr 10 2020 20:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52192 * 2 1 4 4 C 1.53192 * 109.49939 * 120.08139 * 2 1 3 5 5 N 1.46920 * 108.77637 * 174.58564 * 4 2 1 6 6 C 1.34777 * 120.62980 * 126.37138 * 5 4 2 7 7 O 1.21281 * 120.00242 * 5.19123 * 6 5 4 8 8 C 1.50701 * 119.99602 * 185.19429 * 6 5 4 9 9 C 1.52997 * 110.01863 * 295.93446 * 8 6 5 10 10 C 1.54264 * 110.03563 * 57.32932 * 8 6 5 11 11 C 1.54963 * 104.16109 * 95.75251 * 10 8 6 12 12 C 1.54893 * 102.77901 * 37.88652 * 11 10 8 13 13 C 1.53876 * 110.02975 * 174.54848 * 8 6 5 14 14 C 1.46926 * 118.74022 * 306.64393 * 5 4 2 15 15 C 1.52762 * 109.00883 * 53.30407 * 14 5 4 16 16 C 1.53040 * 109.38603 * 305.59398 * 15 14 5 17 17 H 1.09003 * 109.46179 * 181.25560 * 16 15 14 18 18 N 1.46502 * 109.46050 * 301.21517 * 16 15 14 19 19 C 1.36933 * 119.99949 * 275.06894 * 18 16 15 20 20 H 1.08003 * 120.00022 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00067 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99896 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00307 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47184 * 89.99685 * 23 21 19 25 25 H 1.48499 * 109.47428 * 210.00171 * 23 21 19 26 26 H 1.48504 * 109.46873 * 330.00277 * 23 21 19 27 27 H 1.09001 * 109.47206 * 299.91457 * 1 2 3 28 28 H 1.08996 * 109.47345 * 59.91987 * 1 2 3 29 29 H 1.08997 * 109.47310 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.58222 * 54.79678 * 4 2 1 31 31 H 1.08999 * 109.58947 * 294.37714 * 4 2 1 32 32 H 1.09001 * 109.47287 * 53.70769 * 9 8 6 33 33 H 1.08995 * 109.47435 * 173.70647 * 9 8 6 34 34 H 1.08997 * 109.47535 * 293.70857 * 9 8 6 35 35 H 1.08998 * 110.48576 * 214.39997 * 10 8 6 36 36 H 1.09002 * 110.48519 * 337.04511 * 10 8 6 37 37 H 1.09010 * 110.71951 * 279.57627 * 11 10 8 38 38 H 1.09000 * 110.92438 * 156.29855 * 11 10 8 39 39 H 1.09001 * 110.48756 * 203.40320 * 12 11 10 40 40 H 1.09004 * 110.59319 * 80.81527 * 12 11 10 41 41 H 1.09000 * 110.03256 * 359.94138 * 13 8 6 42 42 H 1.08999 * 110.03630 * 121.38236 * 13 8 6 43 43 H 1.08994 * 109.58994 * 173.14834 * 14 5 4 44 44 H 1.09011 * 109.58507 * 293.57383 * 14 5 4 45 45 H 1.08998 * 109.56478 * 185.55510 * 15 14 5 46 46 H 1.09004 * 109.35527 * 65.50452 * 15 14 5 47 47 H 0.96993 * 120.00009 * 95.06394 * 18 16 15 48 48 H 0.97000 * 120.00200 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0414 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1695 6 6 4.2811 -0.3856 2.1779 7 8 3.7728 0.0191 3.2019 8 6 5.7811 -0.3926 2.0328 9 6 6.2875 -1.8300 1.8972 10 6 6.1965 0.4327 0.7975 11 6 6.5312 1.8325 1.3718 12 6 7.2209 1.4950 2.7170 13 6 6.4318 0.2825 3.2529 14 6 4.1055 -1.4216 -0.0332 15 6 3.5708 -0.6951 -1.2661 16 6 2.0407 -0.7231 -1.2484 17 1 1.6580 -0.2245 -2.1389 18 7 1.5782 -2.1131 -1.2308 19 6 1.4480 -2.8062 -2.4046 20 1 1.6867 -2.3283 -3.3433 21 6 1.0103 -4.1234 -2.3879 22 7 0.7199 -4.7059 -1.2440 23 14 0.8333 -5.0692 -3.9890 24 1 2.1111 -5.7586 -4.3006 25 1 -0.2512 -6.0745 -3.8529 26 1 0.4993 -4.1262 -5.0866 27 1 -0.3634 0.5125 0.8907 28 1 -0.3634 0.5150 -0.8892 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6052 -1.7216 1.2979 31 1 1.7638 -0.1580 2.1389 32 1 5.7574 -2.3269 1.0847 33 1 7.3559 -1.8200 1.6814 34 1 6.1101 -2.3672 2.8288 35 1 7.0751 -0.0052 0.3239 36 1 5.3720 0.4980 0.0875 37 1 5.6210 2.4088 1.5383 38 1 7.2124 2.3710 0.7129 39 1 7.1438 2.3355 3.4067 40 1 8.2657 1.2292 2.5561 41 1 5.6626 0.6161 3.9494 42 1 7.1083 -0.4138 3.7484 43 1 5.1895 -1.3160 0.0099 44 1 3.8411 -2.4775 -0.0916 45 1 3.9333 -1.1898 -2.1671 46 1 3.9159 0.3388 -1.2542 47 1 1.3643 -2.5424 -0.3878 48 1 0.4144 -5.6265 -1.2323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036123621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:33 Heat of formation + Delta-G solvation = -32.885767 kcal Electronic energy + Delta-G solvation = -26016.236833 eV Core-core repulsion = 22684.750544 eV Total energy + Delta-G solvation = -3331.486289 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80636 -38.28116 -36.90225 -34.37976 -32.97315 -31.50348 -31.22570 -29.22431 -28.74377 -26.24194 -25.65209 -24.72219 -23.47036 -21.65419 -21.41042 -20.77316 -18.90574 -17.95552 -17.33844 -16.36453 -16.10400 -15.57878 -14.90991 -14.55298 -14.33906 -14.21332 -13.92540 -13.50811 -13.48829 -13.31824 -12.98326 -12.96804 -12.55485 -12.25233 -11.99558 -11.60484 -11.43083 -11.33936 -11.16034 -11.14285 -10.97311 -10.89315 -10.86127 -10.77810 -10.74495 -10.49600 -10.45010 -10.23601 -10.19568 -9.83696 -9.55348 -9.28302 -8.92783 -8.16466 -6.98460 -5.80077 -3.08491 2.90793 3.33191 3.40221 3.46311 3.47706 4.41612 4.51418 4.56175 4.62420 4.96075 5.18303 5.24330 5.27456 5.34332 5.35674 5.39969 5.47668 5.53049 5.57277 5.60997 5.70192 5.73991 5.75363 5.82163 5.87912 5.89661 5.91441 6.02267 6.08263 6.10394 6.14197 6.16548 6.21794 6.27298 6.33649 6.38116 6.44330 6.51765 6.66730 6.70322 6.77961 6.94336 7.03749 7.67322 7.80681 8.38383 8.48195 9.50061 10.07111 10.42246 11.42298 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.004548 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.257895 B = 6155.231819 C = 6546.282995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.119 3.881 5 N -0.598 5.598 6 C 0.525 3.475 7 O -0.554 6.554 8 C -0.082 4.082 9 C -0.152 4.152 10 C -0.123 4.123 11 C -0.125 4.125 12 C -0.122 4.122 13 C -0.114 4.114 14 C 0.099 3.901 15 C -0.152 4.152 16 C 0.179 3.821 17 H 0.050 0.950 18 N -0.718 5.718 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.283 1.283 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.530 10.977 4.920 16.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.082 0.918 4 C -0.004 4.004 5 N -0.329 5.329 6 C 0.313 3.687 7 O -0.433 6.433 8 C -0.085 4.085 9 C -0.209 4.209 10 C -0.161 4.161 11 C -0.162 4.162 12 C -0.159 4.159 13 C -0.152 4.152 14 C -0.022 4.022 15 C -0.193 4.193 16 C 0.068 3.932 17 H 0.068 0.932 18 N -0.361 5.361 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.735 3.265 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.209 1.209 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.213 11.096 5.282 16.636 hybrid contribution -0.168 -0.887 -0.764 1.183 sum 11.045 10.209 4.517 15.704 Atomic orbital electron populations 1.21664 0.94284 1.03175 1.00368 1.21697 0.96457 0.98758 0.95860 0.91762 1.21630 0.78906 1.01457 0.98370 1.48017 1.06861 1.59811 1.18179 1.20401 0.88994 0.76550 0.82783 1.90602 1.75289 1.48723 1.28660 1.21319 0.92077 0.97518 0.97581 1.22218 1.01553 0.93860 1.03258 1.22767 1.02086 0.95002 0.96212 1.22509 1.00410 0.96746 0.96542 1.22334 0.98910 0.97836 0.96831 1.22247 0.99590 0.96685 0.96680 1.22060 0.97571 0.98903 0.83715 1.22500 1.00557 0.98597 0.97624 1.20206 0.90775 0.87374 0.94798 0.93214 1.42474 1.78944 1.07701 1.06937 1.19216 1.37198 0.93874 0.86583 0.91281 1.24695 1.02277 0.97185 0.96555 1.69648 1.51706 1.13015 1.23668 0.86246 0.77273 0.79846 0.83135 1.21842 1.21899 1.20861 0.93825 0.92845 0.91044 0.90795 0.90011 0.90617 0.91558 0.92141 0.90542 0.89936 0.91576 0.91493 0.91796 0.91828 0.89397 0.91549 0.89484 0.89901 0.90757 0.93306 0.78082 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.05 37.16 0.34 -1.89 16 2 C -0.11 -1.77 2.67 -90.50 -0.24 -2.01 16 3 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 2.05 5.41 -3.71 -0.02 2.03 16 5 N -0.60 -9.73 2.89 -173.03 -0.50 -10.23 16 6 C 0.52 8.54 6.47 -10.98 -0.07 8.47 16 7 O -0.55 -10.66 14.66 5.56 0.08 -10.58 16 8 C -0.08 -1.04 0.61 -154.54 -0.09 -1.13 16 9 C -0.15 -1.76 7.83 37.16 0.29 -1.47 16 10 C -0.12 -1.36 4.52 -25.03 -0.11 -1.47 16 11 C -0.12 -1.28 6.91 -24.70 -0.17 -1.45 16 12 C -0.12 -1.20 6.83 -25.07 -0.17 -1.37 16 13 C -0.11 -1.36 6.05 -25.61 -0.15 -1.51 16 14 C 0.10 1.55 3.72 -3.93 -0.01 1.54 16 15 C -0.15 -2.43 5.55 -26.83 -0.15 -2.58 16 16 C 0.18 3.29 2.53 -67.89 -0.17 3.12 16 17 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 18 N -0.72 -16.35 3.65 -53.38 -0.19 -16.54 16 19 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 20 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 23 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.34 7.53 -51.93 -0.39 0.95 16 30 H 0.07 1.42 6.64 -51.93 -0.34 1.08 16 31 H 0.08 1.43 7.04 -51.93 -0.37 1.07 16 32 H 0.08 0.94 5.01 -51.93 -0.26 0.68 16 33 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.73 7.76 -51.93 -0.40 0.33 16 36 H 0.08 1.00 4.59 -51.93 -0.24 0.76 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.25 6.41 -51.93 -0.33 0.92 16 42 H 0.07 0.70 7.67 -51.93 -0.40 0.31 16 43 H 0.09 1.15 3.18 -51.93 -0.17 0.98 16 44 H 0.08 1.55 7.74 -51.92 -0.40 1.15 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.05 0.69 7.02 -51.93 -0.36 0.33 16 47 H 0.38 9.44 5.92 -40.82 -0.24 9.20 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -29.11 350.74 -8.71 -37.82 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.09 Total: 10.27 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.99 Total: -6.41 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.03 Total: -52.99 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.11 -8.71 -37.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036123621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.935 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds