Wall clock time and date at job start Fri Apr 10 2020 20:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52192 * 2 1 4 4 C 1.53192 * 109.49939 * 120.08139 * 2 1 3 5 5 N 1.46920 * 108.77637 * 174.58564 * 4 2 1 6 6 C 1.34777 * 120.62980 * 126.37138 * 5 4 2 7 7 O 1.21281 * 120.00242 * 5.19123 * 6 5 4 8 8 C 1.50701 * 119.99602 * 185.19429 * 6 5 4 9 9 C 1.52997 * 110.01863 * 295.93446 * 8 6 5 10 10 C 1.54264 * 110.03563 * 57.32932 * 8 6 5 11 11 C 1.54963 * 104.16109 * 95.75251 * 10 8 6 12 12 C 1.54893 * 102.77901 * 37.88652 * 11 10 8 13 13 C 1.53876 * 110.02975 * 174.54848 * 8 6 5 14 14 C 1.46926 * 118.74022 * 306.64393 * 5 4 2 15 15 C 1.52762 * 109.00883 * 53.30407 * 14 5 4 16 16 C 1.53040 * 109.38603 * 305.59398 * 15 14 5 17 17 H 1.09003 * 109.46179 * 181.25560 * 16 15 14 18 18 N 1.46502 * 109.46050 * 301.21517 * 16 15 14 19 19 C 1.36933 * 119.99949 * 275.06894 * 18 16 15 20 20 H 1.08003 * 120.00022 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00067 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99896 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00307 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47184 * 89.99685 * 23 21 19 25 25 H 1.48499 * 109.47428 * 210.00171 * 23 21 19 26 26 H 1.48504 * 109.46873 * 330.00277 * 23 21 19 27 27 H 1.09001 * 109.47206 * 299.91457 * 1 2 3 28 28 H 1.08996 * 109.47345 * 59.91987 * 1 2 3 29 29 H 1.08997 * 109.47310 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.58222 * 54.79678 * 4 2 1 31 31 H 1.08999 * 109.58947 * 294.37714 * 4 2 1 32 32 H 1.09001 * 109.47287 * 53.70769 * 9 8 6 33 33 H 1.08995 * 109.47435 * 173.70647 * 9 8 6 34 34 H 1.08997 * 109.47535 * 293.70857 * 9 8 6 35 35 H 1.08998 * 110.48576 * 214.39997 * 10 8 6 36 36 H 1.09002 * 110.48519 * 337.04511 * 10 8 6 37 37 H 1.09010 * 110.71951 * 279.57627 * 11 10 8 38 38 H 1.09000 * 110.92438 * 156.29855 * 11 10 8 39 39 H 1.09001 * 110.48756 * 203.40320 * 12 11 10 40 40 H 1.09004 * 110.59319 * 80.81527 * 12 11 10 41 41 H 1.09000 * 110.03256 * 359.94138 * 13 8 6 42 42 H 1.08999 * 110.03630 * 121.38236 * 13 8 6 43 43 H 1.08994 * 109.58994 * 173.14834 * 14 5 4 44 44 H 1.09011 * 109.58507 * 293.57383 * 14 5 4 45 45 H 1.08998 * 109.56478 * 185.55510 * 15 14 5 46 46 H 1.09004 * 109.35527 * 65.50452 * 15 14 5 47 47 H 0.96993 * 120.00009 * 95.06394 * 18 16 15 48 48 H 0.97000 * 120.00200 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0414 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1695 6 6 4.2811 -0.3856 2.1779 7 8 3.7728 0.0191 3.2019 8 6 5.7811 -0.3926 2.0328 9 6 6.2875 -1.8300 1.8972 10 6 6.1965 0.4327 0.7975 11 6 6.5312 1.8325 1.3718 12 6 7.2209 1.4950 2.7170 13 6 6.4318 0.2825 3.2529 14 6 4.1055 -1.4216 -0.0332 15 6 3.5708 -0.6951 -1.2661 16 6 2.0407 -0.7231 -1.2484 17 1 1.6580 -0.2245 -2.1389 18 7 1.5782 -2.1131 -1.2308 19 6 1.4480 -2.8062 -2.4046 20 1 1.6867 -2.3283 -3.3433 21 6 1.0103 -4.1234 -2.3879 22 7 0.7199 -4.7059 -1.2440 23 14 0.8333 -5.0692 -3.9890 24 1 2.1111 -5.7586 -4.3006 25 1 -0.2512 -6.0745 -3.8529 26 1 0.4993 -4.1262 -5.0866 27 1 -0.3634 0.5125 0.8907 28 1 -0.3634 0.5150 -0.8892 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6052 -1.7216 1.2979 31 1 1.7638 -0.1580 2.1389 32 1 5.7574 -2.3269 1.0847 33 1 7.3559 -1.8200 1.6814 34 1 6.1101 -2.3672 2.8288 35 1 7.0751 -0.0052 0.3239 36 1 5.3720 0.4980 0.0875 37 1 5.6210 2.4088 1.5383 38 1 7.2124 2.3710 0.7129 39 1 7.1438 2.3355 3.4067 40 1 8.2657 1.2292 2.5561 41 1 5.6626 0.6161 3.9494 42 1 7.1083 -0.4138 3.7484 43 1 5.1895 -1.3160 0.0099 44 1 3.8411 -2.4775 -0.0916 45 1 3.9333 -1.1898 -2.1671 46 1 3.9159 0.3388 -1.2542 47 1 1.3643 -2.5424 -0.3878 48 1 0.4144 -5.6265 -1.2323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036123621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:32 Heat of formation + Delta-G solvation = -48.749032 kcal Electronic energy + Delta-G solvation = -26016.924716 eV Core-core repulsion = 22684.750544 eV Total energy + Delta-G solvation = -3332.174172 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02635 -39.58942 -38.10569 -35.94470 -34.57524 -33.05021 -32.24860 -30.94552 -29.65019 -27.57892 -26.92561 -26.00620 -25.20569 -23.05748 -22.53881 -21.65822 -20.20811 -19.29242 -19.24785 -17.50974 -17.39338 -16.71906 -16.51372 -15.96630 -15.79043 -15.53727 -15.33202 -14.86803 -14.69881 -14.43689 -14.30136 -14.15274 -13.98879 -13.55393 -13.12934 -12.98154 -12.90581 -12.84230 -12.61700 -12.50334 -12.28950 -12.10293 -12.04874 -11.97694 -11.91948 -11.74190 -11.67869 -11.57609 -11.47500 -11.33989 -11.14457 -10.85900 -10.52353 -9.57607 -8.91027 -7.87455 -5.13712 1.50397 1.51085 1.58817 1.62650 2.03987 2.60860 3.40984 3.47168 3.54936 3.69107 3.83878 3.89580 4.04598 4.09066 4.10374 4.31021 4.35090 4.39341 4.43668 4.49063 4.55343 4.61297 4.66631 4.70913 4.74809 4.84745 4.88670 4.90062 4.96949 5.00539 5.04365 5.09885 5.13149 5.17070 5.23382 5.25833 5.27828 5.29652 5.36531 5.41101 5.48115 5.53174 5.61532 5.67706 6.34048 6.50507 7.17515 7.41650 8.18114 8.41593 9.35939 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.004548 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.257895 B = 6155.231819 C = 6546.282995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.123 3.877 5 N -0.598 5.598 6 C 0.518 3.482 7 O -0.589 6.589 8 C -0.080 4.080 9 C -0.150 4.150 10 C -0.122 4.122 11 C -0.123 4.123 12 C -0.116 4.116 13 C -0.115 4.115 14 C 0.109 3.891 15 C -0.143 4.143 16 C 0.172 3.828 17 H 0.048 0.952 18 N -0.725 5.725 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.073 4.073 22 N -0.970 5.970 23 Si 0.963 3.037 24 H -0.290 1.290 25 H -0.304 1.304 26 H -0.271 1.271 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.372 0.628 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.005 12.706 3.751 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 H 0.103 0.897 4 C 0.000 4.000 5 N -0.328 5.328 6 C 0.308 3.692 7 O -0.470 6.470 8 C -0.083 4.083 9 C -0.207 4.207 10 C -0.159 4.159 11 C -0.161 4.161 12 C -0.153 4.153 13 C -0.153 4.153 14 C -0.013 4.013 15 C -0.184 4.184 16 C 0.063 3.937 17 H 0.066 0.934 18 N -0.366 5.366 19 C -0.358 4.358 20 H 0.094 0.906 21 C -0.265 4.265 22 N -0.622 5.622 23 Si 0.794 3.206 24 H -0.217 1.217 25 H -0.231 1.231 26 H -0.196 1.196 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.136 0.864 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.206 0.794 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.715 12.874 4.081 19.248 hybrid contribution -0.949 -1.341 -0.334 1.677 sum 12.766 11.532 3.747 17.607 Atomic orbital electron populations 1.21600 0.94174 1.01435 1.01728 1.21613 0.96505 0.99237 0.94296 0.89666 1.21463 0.79937 0.99910 0.98727 1.48072 1.06375 1.59774 1.18618 1.21182 0.90685 0.75429 0.81869 1.90586 1.76336 1.50180 1.29907 1.21416 0.89012 0.98733 0.99170 1.22228 1.03304 0.92742 1.02451 1.22810 1.02712 0.95321 0.95071 1.22511 1.00218 0.96209 0.97129 1.22335 0.99665 0.96830 0.96505 1.22247 0.99228 0.97941 0.95905 1.22004 0.99265 0.96713 0.83307 1.22374 0.98226 1.00345 0.97453 1.20446 0.92484 0.85142 0.95604 0.93365 1.42593 1.79106 1.09277 1.05585 1.19581 1.34630 0.93844 0.87701 0.90563 1.25378 1.03606 0.98447 0.99052 1.69811 1.53972 1.12797 1.25585 0.85280 0.76624 0.78427 0.80270 1.21697 1.23122 1.19623 0.91924 0.92025 0.94243 0.93585 0.90437 0.91651 0.88462 0.93040 0.87950 0.90879 0.93366 0.89219 0.91559 0.89563 0.92335 0.90231 0.86398 0.93385 0.91181 0.90376 0.79433 0.94462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.05 71.98 0.65 -3.58 16 2 C -0.10 -3.12 2.67 -10.72 -0.03 -3.14 16 3 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.12 4.33 5.41 86.36 0.47 4.80 16 5 N -0.60 -19.37 2.89 -819.74 -2.37 -21.74 16 6 C 0.52 16.69 6.47 87.66 0.57 17.26 16 7 O -0.59 -23.05 14.66 -3.03 -0.04 -23.09 16 8 C -0.08 -1.88 0.61 -52.20 -0.03 -1.91 16 9 C -0.15 -3.15 7.83 71.98 0.56 -2.59 16 10 C -0.12 -2.26 4.52 31.69 0.14 -2.12 16 11 C -0.12 -2.12 6.91 31.91 0.22 -1.90 16 12 C -0.12 -1.92 6.83 31.67 0.22 -1.70 16 13 C -0.12 -2.53 6.05 31.32 0.19 -2.34 16 14 C 0.11 3.30 3.72 86.22 0.32 3.62 16 15 C -0.14 -4.33 5.55 30.53 0.17 -4.16 16 16 C 0.17 6.19 2.53 45.02 0.11 6.30 16 17 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 18 N -0.72 -33.46 3.65 -322.81 -1.18 -34.64 16 19 C -0.23 -11.66 9.93 84.03 0.83 -10.83 16 20 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 21 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 22 N -0.97 -57.86 13.06 21.65 0.28 -57.58 16 23 Si 0.96 44.89 29.55 68.60 2.03 46.92 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.52 7.53 -2.39 -0.02 1.50 16 30 H 0.05 1.88 6.64 -2.38 -0.02 1.86 16 31 H 0.08 2.79 7.04 -2.39 -0.02 2.77 16 32 H 0.06 1.51 5.01 -2.39 -0.01 1.50 16 33 H 0.10 1.46 8.01 -2.39 -0.02 1.44 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.42 7.76 -2.39 -0.02 1.41 16 36 H 0.07 1.51 4.59 -2.39 -0.01 1.50 16 37 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.65 6.41 -2.39 -0.02 1.64 16 42 H 0.08 1.51 7.67 -2.39 -0.02 1.49 16 43 H 0.12 2.85 3.18 -2.39 -0.01 2.84 16 44 H 0.05 1.82 7.74 -2.38 -0.02 1.80 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.08 1.95 7.02 -2.38 -0.02 1.93 16 47 H 0.37 19.05 5.92 -92.71 -0.55 18.50 16 48 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -64.71 350.74 3.98 -60.73 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.40 Total: 35.24 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 4.86 Total: -5.84 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -3.26 Total: -113.96 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.04 Total: -23.09 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.71 3.98 -60.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036123621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.983 kcal (2) G-P(sol) polarization free energy of solvation -64.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds