Wall clock time and date at job start Fri Apr 10 2020 20:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08992 * 109.52706 * 2 1 4 4 C 1.53199 * 109.49688 * 120.08036 * 2 1 3 5 5 N 1.46926 * 108.77411 * 174.58484 * 4 2 1 6 6 C 1.34773 * 120.62970 * 126.36953 * 5 4 2 7 7 O 1.21282 * 120.00222 * 4.48739 * 6 5 4 8 8 C 1.50703 * 120.00317 * 184.77031 * 6 5 4 9 9 C 1.53000 * 110.01426 * 292.99438 * 8 6 5 10 10 C 1.54264 * 110.03429 * 171.55037 * 8 6 5 11 11 C 1.54895 * 104.19259 * 217.10378 * 10 8 6 12 12 C 1.54882 * 102.74917 * 37.94370 * 11 10 8 13 13 C 1.53870 * 110.03255 * 54.38082 * 8 6 5 14 14 C 1.46922 * 118.74175 * 306.64560 * 5 4 2 15 15 C 1.52761 * 109.00957 * 53.30558 * 14 5 4 16 16 C 1.53032 * 109.38490 * 305.59153 * 15 14 5 17 17 H 1.09001 * 109.46234 * 301.21754 * 16 15 14 18 18 N 1.46500 * 109.46428 * 181.25790 * 16 15 14 19 19 C 1.36941 * 119.99910 * 84.92783 * 18 16 15 20 20 H 1.07999 * 119.99665 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00025 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00086 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00126 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47500 * 89.99781 * 23 21 19 25 25 H 1.48497 * 109.47493 * 210.00124 * 23 21 19 26 26 H 1.48504 * 109.47110 * 329.99707 * 23 21 19 27 27 H 1.08999 * 109.47526 * 299.92008 * 1 2 3 28 28 H 1.08999 * 109.47178 * 59.91929 * 1 2 3 29 29 H 1.09005 * 109.47535 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.58940 * 54.80321 * 4 2 1 31 31 H 1.08993 * 109.70199 * 294.44057 * 4 2 1 32 32 H 1.08993 * 109.47722 * 65.64867 * 9 8 6 33 33 H 1.09002 * 109.47408 * 185.65325 * 9 8 6 34 34 H 1.09007 * 109.46977 * 305.64626 * 9 8 6 35 35 H 1.08998 * 110.48866 * 335.77846 * 10 8 6 36 36 H 1.08996 * 110.48891 * 98.42577 * 10 8 6 37 37 H 1.08999 * 110.75713 * 279.62282 * 11 10 8 38 38 H 1.09003 * 110.75326 * 156.26183 * 11 10 8 39 39 H 1.09006 * 110.48523 * 203.37627 * 12 11 10 40 40 H 1.09000 * 110.48641 * 80.73546 * 12 11 10 41 41 H 1.09000 * 110.03688 * 238.57577 * 13 8 6 42 42 H 1.09005 * 110.03579 * 0.02562 * 13 8 6 43 43 H 1.09001 * 109.59120 * 173.14524 * 14 5 4 44 44 H 1.09003 * 109.58782 * 293.57106 * 14 5 4 45 45 H 1.09000 * 109.56632 * 185.55458 * 15 14 5 46 46 H 1.08998 * 109.38487 * 65.51940 * 15 14 5 47 47 H 0.96996 * 120.00259 * 264.93899 * 18 16 15 48 48 H 0.97003 * 120.00292 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0272 0.0000 4 6 2.0412 -0.7238 1.2497 5 7 3.5045 -0.8292 1.1696 6 6 4.2811 -0.3857 2.1779 7 8 3.7724 0.0310 3.1970 8 6 5.7814 -0.4015 2.0367 9 6 6.2870 -1.8445 1.9820 10 6 6.4316 0.3428 3.2211 11 6 7.6409 1.0771 2.5905 12 6 7.0881 1.5278 1.2157 13 6 6.1988 0.3518 0.7616 14 6 4.1055 -1.4216 -0.0331 15 6 3.5708 -0.6951 -1.2660 16 6 2.0408 -0.7231 -1.2483 17 1 1.6967 -1.7573 -1.2353 18 7 1.5264 -0.0530 -2.4452 19 6 1.3964 -0.7493 -3.6172 20 1 1.6726 -1.7925 -3.6590 21 6 0.9095 -0.1143 -4.7514 22 7 0.7841 -0.7836 -5.8778 23 14 0.4324 1.6903 -4.6793 24 1 1.6107 2.5279 -5.0191 25 1 -0.6586 1.9532 -5.6518 26 1 -0.0342 2.0246 -3.3097 27 1 -0.3634 0.5126 0.8907 28 1 -0.3633 0.5151 -0.8892 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6052 -1.7217 1.2981 31 1 1.7636 -0.1601 2.1402 32 1 5.9215 -2.3235 1.0737 33 1 7.3770 -1.8479 1.9811 34 1 5.9227 -2.3904 2.8524 35 1 5.7322 1.0596 3.6515 36 1 6.7678 -0.3653 3.9784 37 1 8.4829 0.3966 2.4641 38 1 7.9266 1.9391 3.1934 39 1 7.9034 1.6844 0.5094 40 1 6.4947 2.4359 1.3222 41 1 6.7622 -0.3103 0.1042 42 1 5.3162 0.7294 0.2451 43 1 5.1895 -1.3160 0.0101 44 1 3.8411 -2.4775 -0.0915 45 1 3.9333 -1.1898 -2.1670 46 1 3.9158 0.3388 -1.2546 47 1 1.2782 0.8839 -2.4077 48 1 0.4442 -0.3398 -6.6705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036123622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:37 Heat of formation + Delta-G solvation = -34.635587 kcal Electronic energy + Delta-G solvation = -25642.148271 eV Core-core repulsion = 22310.586104 eV Total energy + Delta-G solvation = -3331.562167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95307 -38.35408 -37.16444 -34.82193 -33.07029 -31.64211 -31.29411 -29.85257 -28.92935 -26.50515 -25.91430 -24.98653 -22.73895 -21.70186 -21.05547 -20.94971 -19.78089 -18.57705 -17.50443 -16.60457 -16.25522 -15.73361 -15.08626 -14.71117 -14.51100 -14.35077 -13.99321 -13.80665 -13.60357 -13.34099 -13.07629 -12.85795 -12.54693 -12.37354 -12.28293 -11.92311 -11.80036 -11.69758 -11.41711 -11.24974 -11.11942 -11.06266 -11.03691 -10.84812 -10.81576 -10.68017 -10.60473 -10.45030 -10.24489 -9.78641 -9.60876 -9.51154 -8.94570 -8.49482 -7.29903 -5.80689 -3.16009 2.68867 3.07808 3.34331 3.37710 3.43047 4.24661 4.33285 4.51532 4.55766 4.80196 5.01643 5.04814 5.07068 5.08958 5.17221 5.25408 5.26078 5.31396 5.43904 5.48340 5.51727 5.58979 5.60555 5.64677 5.69832 5.73535 5.76610 5.83599 5.88175 5.92986 5.97371 6.02553 6.07075 6.10000 6.15608 6.22304 6.27846 6.29507 6.42122 6.53356 6.66905 6.78487 6.93449 7.52274 7.95111 8.25085 8.38522 9.16874 9.89762 10.09801 11.37662 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.004324 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.954711 B = 6473.835401 C = 6896.175354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.067 0.933 4 C 0.120 3.880 5 N -0.604 5.604 6 C 0.526 3.474 7 O -0.550 6.550 8 C -0.083 4.083 9 C -0.145 4.145 10 C -0.104 4.104 11 C -0.124 4.124 12 C -0.125 4.125 13 C -0.120 4.120 14 C 0.092 3.908 15 C -0.153 4.153 16 C 0.189 3.811 17 H 0.056 0.944 18 N -0.745 5.745 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.934 5.934 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.109 0.430 16.640 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.086 0.914 4 C -0.002 4.002 5 N -0.336 5.336 6 C 0.314 3.686 7 O -0.428 6.428 8 C -0.086 4.086 9 C -0.202 4.202 10 C -0.142 4.142 11 C -0.161 4.161 12 C -0.162 4.162 13 C -0.158 4.158 14 C -0.031 4.031 15 C -0.194 4.194 16 C 0.079 3.921 17 H 0.074 0.926 18 N -0.387 5.387 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.189 4.189 22 N -0.582 5.582 23 Si 0.712 3.288 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.077 0.923 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.798 0.452 16.970 20.673 hybrid contribution -0.416 1.248 -0.333 1.357 sum 11.382 1.700 16.638 20.230 Atomic orbital electron populations 1.21670 0.94183 1.02124 1.01541 1.21780 0.96543 0.99967 0.95017 0.91443 1.21664 0.78853 1.00823 0.98893 1.48094 1.06854 1.60452 1.18186 1.20537 0.89034 0.76426 0.82624 1.90638 1.75455 1.47718 1.28996 1.21393 0.91642 0.97752 0.97855 1.22098 1.01706 0.93492 1.02892 1.22340 0.96842 0.99284 0.95702 1.22506 0.97524 0.99842 0.96276 1.22368 0.98944 0.98063 0.96834 1.22477 1.00482 0.97173 0.95669 1.22195 0.98989 0.97370 0.84506 1.22593 0.99873 1.00477 0.96429 1.20163 0.90556 0.96004 0.85354 0.92576 1.42775 1.78109 1.10208 1.07616 1.19051 1.36398 0.95801 0.85940 0.89216 1.24643 1.01317 0.97370 0.95617 1.69695 1.52156 1.35671 1.00631 0.86598 0.78236 0.86895 0.77049 1.21174 1.21782 1.20331 0.93616 0.91415 0.92575 0.91555 0.89464 0.91150 0.91365 0.92207 0.90001 0.91355 0.91494 0.91488 0.91378 0.91579 0.90497 0.90511 0.88759 0.91506 0.90075 0.92263 0.80650 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.02 37.15 0.34 -1.77 16 2 C -0.11 -1.76 2.46 -90.50 -0.22 -1.98 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.12 1.70 5.71 -3.71 -0.02 1.68 16 5 N -0.60 -8.19 2.86 -173.03 -0.50 -8.69 16 6 C 0.53 7.42 6.33 -10.99 -0.07 7.35 16 7 O -0.55 -9.50 14.93 5.56 0.08 -9.42 16 8 C -0.08 -0.90 0.62 -154.54 -0.10 -1.00 16 9 C -0.14 -1.29 7.86 37.16 0.29 -1.00 16 10 C -0.10 -1.08 5.63 -25.07 -0.14 -1.22 16 11 C -0.12 -1.05 6.91 -24.74 -0.17 -1.22 16 12 C -0.12 -1.15 6.83 -25.08 -0.17 -1.32 16 13 C -0.12 -1.23 4.34 -25.62 -0.11 -1.34 16 14 C 0.09 1.14 4.31 -3.93 -0.02 1.12 16 15 C -0.15 -2.37 5.55 -26.84 -0.15 -2.52 16 16 C 0.19 3.37 2.20 -67.89 -0.15 3.22 16 17 H 0.06 1.05 8.08 -51.93 -0.42 0.64 16 18 N -0.75 -16.62 4.22 -53.39 -0.23 -16.85 16 19 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 20 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -28.67 13.97 55.49 0.78 -27.89 16 23 Si 0.88 21.70 27.74 -169.99 -4.71 16.99 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.19 7.36 -51.93 -0.38 0.80 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.30 7.03 -51.93 -0.37 0.93 16 32 H 0.07 0.60 5.40 -51.93 -0.28 0.32 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.08 1.03 7.01 -51.93 -0.36 0.66 16 36 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.68 7.02 -51.93 -0.36 0.32 16 42 H 0.08 0.92 5.61 -51.93 -0.29 0.63 16 43 H 0.09 0.99 2.72 -51.93 -0.14 0.85 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.06 0.94 7.15 -51.93 -0.37 0.57 16 47 H 0.36 8.10 5.36 -40.82 -0.22 7.88 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 352.78 15.07 5.32 5.32 Total: -1.00 -31.13 352.78 -8.47 -39.61 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.27 Total: 7.50 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.94 Total: -6.57 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.05 Total: -53.43 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.13 -8.47 -39.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036123622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.971 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds