Wall clock time and date at job start Fri Apr 10 2020 20:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 119.99627 * 2 1 4 4 C 1.50701 * 120.00386 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47001 * 6.53441 * 4 2 1 6 6 C 1.52994 * 109.47133 * 246.52958 * 4 2 1 7 7 C 1.50706 * 109.46918 * 126.53263 * 4 2 1 8 8 O 1.21278 * 119.99711 * 125.66031 * 7 4 2 9 9 N 1.34777 * 120.00055 * 305.65509 * 7 4 2 10 10 C 1.46929 * 120.63111 * 355.16271 * 9 7 4 11 11 C 1.53192 * 108.77379 * 126.36842 * 10 9 7 12 12 C 1.53033 * 109.31383 * 54.63357 * 11 10 9 13 13 H 1.09002 * 109.46204 * 58.65598 * 12 11 10 14 14 N 1.46505 * 109.45864 * 178.61224 * 12 11 10 15 15 C 1.36940 * 120.00190 * 275.06821 * 14 12 11 16 16 H 1.08007 * 119.99544 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00053 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99643 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00180 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47540 * 89.99752 * 19 17 15 21 21 H 1.48496 * 109.47459 * 210.00006 * 19 17 15 22 22 H 1.48505 * 109.46888 * 329.99858 * 19 17 15 23 23 C 1.53036 * 109.54049 * 298.63477 * 12 11 10 24 24 H 1.08997 * 109.52373 * 301.39672 * 23 12 11 25 25 C 1.52999 * 109.49694 * 181.31660 * 23 12 11 26 26 C 1.46925 * 120.63233 * 175.13820 * 9 7 4 27 27 H 1.08004 * 120.00027 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.00787 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47416 * 269.99913 * 3 2 1 30 30 H 1.09003 * 109.46962 * 30.00418 * 3 2 1 31 31 H 1.09006 * 109.47182 * 150.00277 * 3 2 1 32 32 H 1.09000 * 109.47038 * 175.13702 * 5 4 2 33 33 H 1.09004 * 109.47280 * 295.13174 * 5 4 2 34 34 H 1.08998 * 109.47378 * 55.13421 * 5 4 2 35 35 H 1.09003 * 109.47506 * 304.92122 * 6 4 2 36 36 H 1.09003 * 109.46703 * 64.92058 * 6 4 2 37 37 H 1.08996 * 109.47170 * 184.91603 * 6 4 2 38 38 H 1.08999 * 109.58914 * 246.15724 * 10 9 7 39 39 H 1.09005 * 109.58703 * 6.58298 * 10 9 7 40 40 H 1.09000 * 109.49676 * 174.59055 * 11 10 9 41 41 H 1.09003 * 109.50015 * 294.65008 * 11 10 9 42 42 H 0.96999 * 120.00042 * 95.06995 * 14 12 11 43 43 H 0.97001 * 119.99429 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.47335 * 300.15728 * 25 23 12 45 45 H 1.08994 * 109.47282 * 60.16063 * 25 23 12 46 46 H 1.09007 * 109.46970 * 180.16314 * 25 23 12 47 47 H 1.08995 * 109.58624 * 113.84240 * 26 9 7 48 48 H 1.09003 * 109.58499 * 353.41718 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0633 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 1.0775 -2.4632 -0.1653 6 6 2.8160 -1.4600 1.3224 7 6 3.0472 -1.3166 -1.1423 8 8 4.2202 -1.5393 -0.9298 9 7 2.6232 -1.0795 -2.3995 10 6 1.1922 -0.9130 -2.6881 11 6 0.9902 0.4103 -3.4330 12 6 1.8883 0.4360 -4.6718 13 1 1.6434 -0.4089 -5.3156 14 7 1.6733 1.6861 -5.4048 15 6 0.6472 1.7834 -6.3064 16 1 -0.0037 0.9385 -6.4769 17 6 0.4438 2.9677 -7.0013 18 7 -0.5421 3.0610 -7.8683 19 14 1.5700 4.4286 -6.7069 20 1 2.7188 4.3652 -7.6458 21 1 0.8162 5.6881 -6.9316 22 1 2.0706 4.3939 -5.3092 23 6 3.3544 0.3420 -4.2431 24 1 3.5939 1.1730 -3.5797 25 6 4.2529 0.4008 -5.4801 26 6 3.5833 -0.9820 -3.5074 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 0.0004 29 1 2.2450 1.6199 -1.0277 30 1 1.4742 2.0648 0.5139 31 1 3.0158 1.1749 0.5138 32 1 1.6283 -3.3997 -0.2524 33 1 0.4207 -2.5076 0.7035 34 1 0.4810 -2.3076 -1.0641 35 1 3.4544 -0.5909 1.4814 36 1 2.1000 -1.5394 2.1405 37 1 3.4297 -2.3602 1.2881 38 1 0.8463 -1.7388 -3.3097 39 1 0.6306 -0.8958 -1.7540 40 1 -0.0525 0.5008 -3.7376 41 1 1.2508 1.2407 -2.7769 42 1 2.2577 2.4449 -5.2514 43 1 -0.6845 3.8887 -8.3535 44 1 4.0123 -0.4297 -6.1438 45 1 4.0897 1.3429 -6.0033 46 1 5.2969 0.3309 -5.1745 47 1 3.4324 -1.8135 -4.1958 48 1 4.5994 -1.0105 -3.1140 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036138671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:41 Heat of formation + Delta-G solvation = -2.111061 kcal Electronic energy + Delta-G solvation = -25966.842618 eV Core-core repulsion = 22636.690820 eV Total energy + Delta-G solvation = -3330.151798 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94262 -38.07341 -37.03449 -34.67094 -32.78740 -32.02288 -31.52871 -29.81870 -28.69824 -26.85259 -26.06515 -25.31979 -23.40915 -22.30400 -21.53572 -20.31965 -19.52323 -18.05657 -17.45501 -16.58262 -16.04892 -15.68169 -15.04758 -14.63103 -14.38324 -14.26910 -14.11926 -13.71227 -13.35535 -13.11511 -12.97537 -12.77779 -12.53891 -12.46095 -12.38735 -12.23879 -12.02654 -11.86466 -11.74780 -11.69581 -11.39685 -11.14037 -11.04761 -10.84753 -10.79438 -10.68957 -10.51851 -10.24237 -9.82088 -9.75011 -9.60098 -9.01340 -8.79012 -8.46803 -7.28164 -5.79752 -3.14759 2.01850 2.68519 3.10531 3.34720 3.37905 3.43226 4.38379 4.45241 4.56471 4.63770 4.88516 5.03882 5.06310 5.08342 5.20389 5.27983 5.38021 5.44135 5.46683 5.49857 5.56731 5.60352 5.63914 5.64407 5.67060 5.70858 5.77449 5.87356 5.91545 5.96582 5.98741 6.05973 6.10429 6.16015 6.28621 6.33243 6.40897 6.46478 6.53968 6.65343 6.68076 6.81123 6.97004 7.53343 7.96299 8.24066 8.39559 9.17994 9.90893 10.11073 11.38708 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.004784 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.634759 B = 5851.231260 C = 6294.182493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.125 4.125 4 C -0.048 4.048 5 C -0.154 4.154 6 C -0.122 4.122 7 C 0.529 3.471 8 O -0.549 6.549 9 N -0.599 5.599 10 C 0.081 3.919 11 C -0.148 4.148 12 C 0.189 3.811 13 H 0.055 0.945 14 N -0.745 5.745 15 C -0.241 4.241 16 H 0.090 0.910 17 C 0.006 3.994 18 N -0.934 5.934 19 Si 0.881 3.119 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.278 1.278 23 C -0.113 4.113 24 H 0.067 0.933 25 C -0.137 4.137 26 C 0.119 3.881 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.045 0.955 47 H 0.066 0.934 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.276 -9.360 16.928 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.107 4.107 3 C -0.181 4.181 4 C -0.051 4.051 5 C -0.211 4.211 6 C -0.179 4.179 7 C 0.317 3.683 8 O -0.427 6.427 9 N -0.331 5.331 10 C -0.041 4.041 11 C -0.189 4.189 12 C 0.079 3.921 13 H 0.073 0.927 14 N -0.387 5.387 15 C -0.370 4.370 16 H 0.108 0.892 17 C -0.190 4.190 18 N -0.582 5.582 19 Si 0.712 3.288 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.133 4.133 24 H 0.085 0.915 25 C -0.195 4.195 26 C -0.003 4.003 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.697 -9.516 16.848 19.912 hybrid contribution 0.552 1.282 -0.030 1.396 sum 5.249 -8.234 16.818 19.448 Atomic orbital electron populations 1.23865 0.94997 1.02738 1.01574 1.21422 0.95158 0.94292 0.99875 1.20936 1.00104 0.94148 1.02928 1.19830 0.95451 0.94617 0.95202 1.22208 0.98742 0.96867 1.03313 1.21615 0.99575 1.03133 0.93601 1.20317 0.88688 0.75880 0.83439 1.90651 1.18272 1.49757 1.84044 1.48082 1.08177 1.69863 1.06940 1.22538 0.80553 0.98844 1.02205 1.22613 1.02538 0.95304 0.98478 1.20174 0.90409 0.90353 0.91172 0.92650 1.42776 1.36654 1.10801 1.48467 1.19052 1.05537 0.99256 1.13192 0.89237 1.24639 0.98076 0.97510 0.98754 1.69698 1.32140 1.26865 1.29500 0.86602 0.80821 0.83673 0.77720 1.21096 1.21822 1.20428 1.21773 0.97510 0.96902 0.97080 0.91483 1.21668 0.97551 1.03215 0.97062 1.21674 0.93599 0.97370 0.87692 0.87507 0.87710 0.90788 0.91448 0.91869 0.91805 0.91052 0.90642 0.91961 0.92026 0.91520 0.91853 0.87732 0.90355 0.92229 0.80693 0.93090 0.92551 0.91509 0.93595 0.91552 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.84 11.65 29.02 0.34 -1.50 16 2 C -0.11 -1.14 3.26 -101.06 -0.33 -1.47 16 3 C -0.12 -1.40 9.48 36.01 0.34 -1.06 16 4 C -0.05 -0.53 0.61 -156.82 -0.10 -0.62 16 5 C -0.15 -1.39 6.89 37.15 0.26 -1.13 16 6 C -0.12 -1.26 7.82 37.15 0.29 -0.97 16 7 C 0.53 7.47 6.02 -10.98 -0.07 7.40 16 8 O -0.55 -9.38 15.32 5.56 0.09 -9.30 16 9 N -0.60 -8.23 2.96 -172.77 -0.51 -8.74 16 10 C 0.08 1.05 4.59 -3.71 -0.02 1.03 16 11 C -0.15 -2.37 5.66 -26.61 -0.15 -2.52 16 12 C 0.19 3.40 2.19 -67.89 -0.15 3.25 16 13 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 14 N -0.75 -16.67 4.22 -53.39 -0.23 -16.90 16 15 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 16 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 17 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 18 N -0.93 -28.75 13.97 55.49 0.78 -27.97 16 19 Si 0.88 21.75 27.74 -169.99 -4.71 17.03 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 23 C -0.11 -1.75 2.46 -90.50 -0.22 -1.98 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 C -0.14 -2.08 9.02 37.16 0.34 -1.75 16 26 C 0.12 1.69 5.70 -3.71 -0.02 1.67 16 27 H 0.11 0.86 5.72 -52.48 -0.30 0.56 16 28 H 0.10 0.97 8.04 -52.48 -0.42 0.55 16 29 H 0.07 0.96 6.81 -51.93 -0.35 0.61 16 30 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 31 H 0.06 0.71 6.92 -51.93 -0.36 0.35 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.52 7.50 -51.93 -0.39 0.13 16 34 H 0.07 0.67 4.80 -51.93 -0.25 0.42 16 35 H 0.06 0.68 6.95 -51.93 -0.36 0.32 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.11 1.18 1.69 -51.93 -0.09 1.09 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.06 0.98 6.81 -51.93 -0.35 0.62 16 42 H 0.36 8.11 5.36 -40.82 -0.22 7.89 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.07 1.15 7.36 -51.93 -0.38 0.76 16 46 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.09 1.29 7.04 -51.93 -0.37 0.92 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -31.17 356.73 -7.02 -38.19 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -8.06 Total: 8.51 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 0.26 Total: -6.21 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.04 Total: -53.60 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.17 -7.02 -38.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036138671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.079 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds