Wall clock time and date at job start Fri Apr 10 2020 20:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00317 * 2 1 4 4 C 1.50699 * 119.99656 * 180.02562 * 2 1 3 5 5 C 1.53003 * 109.47322 * 359.97438 * 4 2 1 6 6 C 1.53001 * 109.47336 * 239.99286 * 4 2 1 7 7 C 1.50708 * 109.47279 * 119.99335 * 4 2 1 8 8 O 1.21286 * 119.99773 * 128.56335 * 7 4 2 9 9 N 1.34774 * 120.00015 * 308.56972 * 7 4 2 10 10 C 1.46929 * 120.62916 * 354.98560 * 9 7 4 11 11 C 1.53191 * 108.77302 * 233.58451 * 10 9 7 12 12 C 1.53046 * 109.31295 * 305.36545 * 11 10 9 13 13 H 1.08994 * 109.46070 * 181.38382 * 12 11 10 14 14 N 1.46495 * 109.45743 * 301.34294 * 12 11 10 15 15 C 1.36929 * 120.00525 * 274.99778 * 14 12 11 16 16 H 1.08006 * 119.99599 * 0.02562 * 15 14 12 17 17 C 1.38813 * 120.00808 * 180.02562 * 15 14 12 18 18 N 1.31622 * 119.99525 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47597 * 60.00024 * 19 17 15 21 21 H 1.48504 * 109.47120 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47285 * 299.99679 * 19 17 15 23 23 C 1.53039 * 109.53699 * 61.36527 * 12 11 10 24 24 H 1.09000 * 109.49890 * 58.58762 * 23 12 11 25 25 C 1.53003 * 109.49695 * 178.65141 * 23 12 11 26 26 C 1.46923 * 120.62909 * 174.70214 * 9 7 4 27 27 H 1.07998 * 120.00553 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99367 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47732 * 270.00641 * 3 2 1 30 30 H 1.09007 * 109.47068 * 30.00722 * 3 2 1 31 31 H 1.09004 * 109.47275 * 150.00052 * 3 2 1 32 32 H 1.08999 * 109.47260 * 187.83782 * 5 4 2 33 33 H 1.08998 * 109.46518 * 307.83752 * 5 4 2 34 34 H 1.08997 * 109.47113 * 67.83351 * 5 4 2 35 35 H 1.08996 * 109.46908 * 294.88638 * 6 4 2 36 36 H 1.09002 * 109.46748 * 54.88170 * 6 4 2 37 37 H 1.08997 * 109.47558 * 174.88156 * 6 4 2 38 38 H 1.08995 * 109.58737 * 353.36574 * 10 9 7 39 39 H 1.09001 * 109.58737 * 113.79808 * 10 9 7 40 40 H 1.09001 * 109.49684 * 65.31200 * 11 10 9 41 41 H 1.09001 * 109.49950 * 185.41354 * 11 10 9 42 42 H 0.97007 * 119.99804 * 95.00427 * 14 12 11 43 43 H 0.96995 * 119.99766 * 179.97438 * 18 17 15 44 44 H 1.09007 * 109.47041 * 59.99971 * 25 23 12 45 45 H 1.08999 * 109.46807 * 179.97438 * 25 23 12 46 46 H 1.08991 * 109.47259 * 299.99880 * 25 23 12 47 47 H 1.08999 * 109.58338 * 246.20063 * 26 9 7 48 48 H 1.08994 * 109.58836 * 6.62282 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 1.0691 -2.4681 -0.0005 6 6 2.9432 -1.3868 1.2485 7 6 2.9297 -1.3846 -1.2312 8 8 4.1085 -1.6504 -1.1269 9 7 2.3946 -1.1601 -2.4477 10 6 0.9493 -0.9453 -2.6016 11 6 0.4132 -1.9290 -3.6464 12 6 1.2129 -1.7766 -4.9424 13 1 0.8175 -2.4582 -5.6954 14 7 1.1013 -0.3981 -5.4255 15 6 0.0320 -0.0270 -6.1960 16 1 -0.7294 -0.7506 -6.4474 17 6 -0.0736 1.2791 -6.6542 18 7 0.8541 2.1610 -6.3475 19 14 -1.5328 1.7853 -7.7048 20 1 -2.7895 1.5696 -6.9436 21 1 -1.4112 3.2217 -8.0617 22 1 -1.5581 0.9674 -8.9440 23 6 2.6837 -2.1068 -4.6780 24 1 2.7651 -3.1240 -4.2951 25 6 3.4763 -1.9867 -5.9813 26 6 3.2463 -1.1195 -3.6441 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5399 0.9354 0.0004 29 1 2.2452 1.6198 -1.0276 30 1 1.4745 2.0647 0.5140 31 1 3.0160 1.1747 0.5138 32 1 1.6068 -3.4058 0.1393 33 1 0.3542 -2.3346 0.8115 34 1 0.5379 -2.4920 -0.9519 35 1 3.7098 -0.6133 1.2041 36 1 2.3283 -1.2384 2.1363 37 1 3.4180 -2.3668 1.2952 38 1 0.4506 -1.1176 -1.6479 39 1 0.7651 0.0765 -2.9334 40 1 0.5160 -2.9480 -3.2733 41 1 -0.6381 -1.7165 -3.8406 42 1 1.7850 0.2519 -5.1995 43 1 0.7805 3.0735 -6.6680 44 1 3.3956 -0.9690 -6.3632 45 1 4.5238 -2.2215 -5.7923 46 1 3.0742 -2.6837 -6.7165 47 1 3.2455 -0.1116 -4.0591 48 1 4.2636 -1.4066 -3.3785 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036138673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:49 Heat of formation + Delta-G solvation = -2.175311 kcal Electronic energy + Delta-G solvation = -26212.183087 eV Core-core repulsion = 22882.028503 eV Total energy + Delta-G solvation = -3330.154584 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73769 -38.02147 -36.82287 -34.13379 -32.69175 -31.85459 -31.35060 -29.23935 -28.52747 -26.57061 -25.89863 -25.12098 -23.51424 -22.78622 -21.59814 -20.15104 -18.51649 -17.58277 -17.29952 -16.44319 -15.79595 -15.45803 -14.82956 -14.63448 -14.37161 -14.02477 -13.85539 -13.64415 -13.26608 -13.06159 -12.80830 -12.63346 -12.50002 -12.33496 -12.19354 -12.10786 -11.81492 -11.65037 -11.40507 -11.28483 -11.17166 -10.98387 -10.87210 -10.75357 -10.69982 -10.46878 -10.32407 -10.21593 -9.81170 -9.61161 -9.53627 -8.95708 -8.63022 -8.12195 -6.96370 -5.78613 -3.06600 2.16967 2.91071 3.37415 3.41493 3.46839 3.47374 4.55395 4.57618 4.65880 4.78836 5.06200 5.19582 5.28045 5.36203 5.40085 5.51945 5.55732 5.59810 5.63209 5.64020 5.75453 5.76415 5.80191 5.81117 5.86909 5.89138 5.99685 6.06519 6.08633 6.11662 6.16902 6.20873 6.30072 6.36822 6.46504 6.53902 6.59159 6.67591 6.73849 6.80267 6.82136 6.97284 7.06438 7.68117 7.82864 8.40091 8.48017 9.51564 10.08964 10.44236 11.43868 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.017418 B = 0.005374 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.102400 B = 5209.260111 C = 5926.775268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.122 4.122 4 C -0.047 4.047 5 C -0.155 4.155 6 C -0.121 4.121 7 C 0.527 3.473 8 O -0.555 6.555 9 N -0.593 5.593 10 C 0.093 3.907 11 C -0.152 4.152 12 C 0.179 3.821 13 H 0.049 0.951 14 N -0.717 5.717 15 C -0.236 4.236 16 H 0.068 0.932 17 C -0.011 4.011 18 N -0.933 5.933 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.107 4.107 24 H 0.064 0.936 25 C -0.137 4.137 26 C 0.117 3.883 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -7.278 13.065 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.110 4.110 3 C -0.179 4.179 4 C -0.050 4.050 5 C -0.212 4.212 6 C -0.178 4.178 7 C 0.314 3.686 8 O -0.434 6.434 9 N -0.324 5.324 10 C -0.028 4.028 11 C -0.193 4.193 12 C 0.069 3.931 13 H 0.067 0.933 14 N -0.360 5.360 15 C -0.367 4.367 16 H 0.086 0.914 17 C -0.207 4.207 18 N -0.581 5.581 19 Si 0.735 3.265 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.127 4.127 24 H 0.083 0.917 25 C -0.195 4.195 26 C -0.005 4.005 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.092 0.908 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.296 -7.373 12.985 14.989 hybrid contribution -0.793 0.626 -0.697 1.227 sum 0.504 -6.747 12.288 14.027 Atomic orbital electron populations 1.23863 0.95081 1.02558 1.01641 1.21448 0.95133 0.94372 1.00095 1.20880 1.00030 0.94077 1.02874 1.19804 0.96008 0.94490 0.94673 1.22216 0.98743 0.96768 1.03497 1.21608 0.98649 1.03013 0.94532 1.20277 0.87778 0.76253 0.84278 1.90635 1.16836 1.49547 1.86353 1.48057 1.08977 1.69229 1.06150 1.22394 0.78919 1.01276 1.00259 1.22557 1.01414 0.97154 0.98179 1.20201 0.91244 0.88885 0.92810 0.93317 1.42451 1.27328 1.05455 1.60730 1.19170 1.00109 0.94120 1.23350 0.91384 1.24685 0.98391 0.96300 1.01352 1.69639 1.34726 1.03625 1.50158 0.86324 0.82402 0.77344 0.80423 1.21403 1.21824 1.21395 1.21764 0.97151 0.98360 0.95432 0.91739 1.21667 0.97994 1.03464 0.96375 1.21731 0.94366 1.00172 0.84257 0.87521 0.87818 0.90885 0.91586 0.91863 0.91828 0.91052 0.90553 0.91856 0.92162 0.91818 0.88667 0.90128 0.93537 0.90914 0.78117 0.93520 0.91085 0.93836 0.92887 0.90802 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.18 11.33 29.02 0.33 -1.85 16 2 C -0.11 -1.36 3.35 -101.07 -0.34 -1.70 16 3 C -0.12 -1.52 9.64 36.00 0.35 -1.18 16 4 C -0.05 -0.60 0.61 -156.81 -0.10 -0.69 16 5 C -0.16 -1.70 7.07 37.16 0.26 -1.43 16 6 C -0.12 -1.42 7.49 37.16 0.28 -1.14 16 7 C 0.53 8.60 6.18 -10.98 -0.07 8.54 16 8 O -0.55 -10.62 15.43 5.55 0.09 -10.54 16 9 N -0.59 -9.80 2.95 -172.50 -0.51 -10.31 16 10 C 0.09 1.50 4.11 -3.71 -0.02 1.49 16 11 C -0.15 -2.53 5.64 -26.61 -0.15 -2.68 16 12 C 0.18 3.37 2.53 -67.89 -0.17 3.20 16 13 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 14 N -0.72 -16.50 3.64 -53.39 -0.19 -16.69 16 15 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 16 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 19 Si 0.90 21.73 29.55 -169.99 -5.02 16.70 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 C -0.11 -1.80 2.68 -90.27 -0.24 -2.04 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 C -0.14 -2.26 9.05 37.16 0.34 -1.92 16 26 C 0.12 2.05 5.45 -3.49 -0.02 2.03 16 27 H 0.11 1.06 5.45 -52.49 -0.29 0.78 16 28 H 0.10 1.11 8.04 -52.48 -0.42 0.69 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.71 8.06 -51.92 -0.42 0.29 16 31 H 0.06 0.77 6.75 -51.93 -0.35 0.41 16 32 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.07 0.64 6.99 -51.93 -0.36 0.28 16 34 H 0.08 0.88 5.00 -51.93 -0.26 0.62 16 35 H 0.06 0.80 6.95 -51.93 -0.36 0.43 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.10 1.31 1.59 -51.93 -0.08 1.23 16 39 H 0.08 1.56 7.74 -51.93 -0.40 1.16 16 40 H 0.05 0.69 8.05 -51.93 -0.42 0.27 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.38 9.50 5.92 -40.82 -0.24 9.26 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.07 1.35 7.54 -51.92 -0.39 0.96 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 1.42 6.63 -51.93 -0.34 1.08 16 48 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -29.29 357.56 -7.37 -36.66 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -8.05 Total: 11.19 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 0.21 Total: -6.10 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.02 Total: -53.30 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.29 -7.37 -36.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036138673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.484 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds