Wall clock time and date at job start Fri Apr 10 2020 20:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 119.99742 * 2 1 4 4 C 1.50700 * 120.00478 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.46787 * 359.97438 * 4 2 1 6 6 C 1.53004 * 109.47226 * 239.99863 * 4 2 1 7 7 C 1.50699 * 109.47177 * 119.99692 * 4 2 1 8 8 O 1.21285 * 120.00075 * 128.56610 * 7 4 2 9 9 N 1.34776 * 119.99865 * 308.56888 * 7 4 2 10 10 C 1.46926 * 120.63339 * 354.98576 * 9 7 4 11 11 C 1.53184 * 108.77359 * 233.58669 * 10 9 7 12 12 C 1.53043 * 109.31796 * 305.36443 * 11 10 9 13 13 H 1.09001 * 109.45664 * 301.34671 * 12 11 10 14 14 N 1.46498 * 109.46322 * 181.39097 * 12 11 10 15 15 C 1.36939 * 120.00151 * 84.92818 * 14 12 11 16 16 H 1.07997 * 119.99797 * 0.02562 * 15 14 12 17 17 C 1.38808 * 119.99729 * 180.02562 * 15 14 12 18 18 N 1.31626 * 120.00099 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99939 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47018 * 59.99867 * 19 17 15 21 21 H 1.48496 * 109.47277 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47066 * 299.99827 * 19 17 15 23 23 C 1.53034 * 109.53792 * 61.36396 * 12 11 10 24 24 H 1.09002 * 109.49651 * 58.61724 * 23 12 11 25 25 C 1.53000 * 109.50033 * 178.68723 * 23 12 11 26 26 C 1.46928 * 120.62725 * 174.96097 * 9 7 4 27 27 H 1.08008 * 119.99598 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00469 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46680 * 270.00247 * 3 2 1 30 30 H 1.09001 * 109.47082 * 30.00168 * 3 2 1 31 31 H 1.09003 * 109.47401 * 150.00400 * 3 2 1 32 32 H 1.09007 * 109.47150 * 187.83594 * 5 4 2 33 33 H 1.08998 * 109.47584 * 307.83828 * 5 4 2 34 34 H 1.09005 * 109.47409 * 67.83817 * 5 4 2 35 35 H 1.09006 * 109.46987 * 294.88342 * 6 4 2 36 36 H 1.08997 * 109.47136 * 54.88057 * 6 4 2 37 37 H 1.08996 * 109.47026 * 174.87957 * 6 4 2 38 38 H 1.08999 * 109.58391 * 113.79810 * 10 9 7 39 39 H 1.09000 * 109.58231 * 353.37783 * 10 9 7 40 40 H 1.09009 * 109.49690 * 185.41301 * 11 10 9 41 41 H 1.09001 * 109.52694 * 65.33851 * 11 10 9 42 42 H 0.97002 * 119.99335 * 264.92982 * 14 12 11 43 43 H 0.96995 * 119.99564 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.46967 * 59.99766 * 25 23 12 45 45 H 1.08999 * 109.46894 * 300.00326 * 25 23 12 46 46 H 1.09002 * 109.47085 * 180.02562 * 25 23 12 47 47 H 1.08993 * 109.58944 * 6.63164 * 26 9 7 48 48 H 1.08996 * 109.58987 * 246.19743 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 1.0694 -2.4679 -0.0005 6 6 2.9432 -1.3866 1.2486 7 6 2.9299 -1.3843 -1.2311 8 8 4.1087 -1.6500 -1.1268 9 7 2.3948 -1.1599 -2.4476 10 6 0.9495 -0.9453 -2.6016 11 6 0.4136 -1.9290 -3.6465 12 6 1.2133 -1.7766 -4.9424 13 1 1.1302 -0.7509 -5.3018 14 7 0.6818 -2.6927 -5.9546 15 6 -0.3877 -2.3179 -6.7232 16 1 -0.8392 -1.3468 -6.5835 17 6 -0.8916 -3.1862 -7.6819 18 7 -0.3409 -4.3695 -7.8524 19 14 -2.3501 -2.6747 -8.7309 20 1 -2.0022 -1.4533 -9.5005 21 1 -2.6927 -3.7720 -9.6710 22 1 -3.5154 -2.3926 -7.8546 23 6 2.6841 -2.1065 -4.6780 24 1 2.7656 -3.1239 -4.2955 25 6 3.4768 -1.9856 -5.9810 26 6 3.2458 -1.1247 -3.6448 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 2.2450 1.6198 -1.0277 30 1 1.4743 2.0648 0.5139 31 1 3.0159 1.1749 0.5138 32 1 1.6072 -3.4057 0.1392 33 1 0.3544 -2.3347 0.8114 34 1 0.5382 -2.4920 -0.9520 35 1 3.7098 -0.6129 1.2043 36 1 2.3283 -1.2383 2.1363 37 1 3.4181 -2.3665 1.2952 38 1 0.7652 0.0765 -2.9334 39 1 0.4508 -1.1175 -1.6478 40 1 -0.6378 -1.7166 -3.8407 41 1 0.5159 -2.9481 -3.2735 42 1 1.0876 -3.5647 -6.0802 43 1 -0.6933 -4.9763 -8.5221 44 1 3.3959 -0.9677 -6.3624 45 1 3.0750 -2.6822 -6.7167 46 1 4.5242 -2.2211 -5.7922 47 1 4.2621 -1.4155 -3.3793 48 1 3.2487 -0.1176 -4.0616 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036138674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:14:53 Heat of formation + Delta-G solvation = -4.735080 kcal Electronic energy + Delta-G solvation = -25675.227025 eV Core-core repulsion = 22344.961441 eV Total energy + Delta-G solvation = -3330.265584 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.88201 -37.97959 -36.98960 -34.51688 -32.72723 -32.01360 -31.44383 -29.37450 -28.69857 -26.70125 -26.03527 -25.14217 -23.46859 -22.38806 -21.61117 -20.31251 -19.33041 -17.87269 -17.06529 -16.64372 -15.97339 -15.55984 -14.99610 -14.88780 -14.23591 -14.10510 -13.95783 -13.67002 -13.35182 -13.26212 -12.94926 -12.74221 -12.52163 -12.41177 -12.27429 -12.12866 -11.93292 -11.84656 -11.55039 -11.52566 -11.14172 -11.08295 -10.91468 -10.85403 -10.78507 -10.55995 -10.38643 -10.23109 -9.78743 -9.74174 -9.60538 -9.01031 -8.77765 -8.38739 -6.96063 -5.77738 -3.06326 1.96352 2.73947 3.17070 3.42016 3.46868 3.47818 4.39615 4.49373 4.57395 4.64202 4.93756 5.03315 5.15134 5.28738 5.30173 5.37169 5.42920 5.45377 5.46121 5.53760 5.56365 5.65549 5.68710 5.69667 5.72747 5.78106 5.80926 5.85156 5.98774 6.03912 6.09186 6.11364 6.21778 6.32803 6.38361 6.42469 6.45542 6.54366 6.62589 6.68170 6.83285 6.94552 7.07462 7.60309 7.67627 8.30370 8.40624 9.51870 10.09756 10.44789 11.44743 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.004223 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.197873 B = 6629.250451 C = 7203.596621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.121 4.121 4 C -0.047 4.047 5 C -0.158 4.158 6 C -0.121 4.121 7 C 0.529 3.471 8 O -0.549 6.549 9 N -0.598 5.598 10 C 0.085 3.915 11 C -0.153 4.153 12 C 0.185 3.815 13 H 0.046 0.954 14 N -0.721 5.721 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.109 4.109 24 H 0.068 0.932 25 C -0.136 4.136 26 C 0.118 3.882 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.087 0.913 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.875 8.937 17.002 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.113 4.113 3 C -0.177 4.177 4 C -0.050 4.050 5 C -0.214 4.214 6 C -0.179 4.179 7 C 0.316 3.684 8 O -0.427 6.427 9 N -0.330 5.330 10 C -0.038 4.038 11 C -0.194 4.194 12 C 0.074 3.926 13 H 0.064 0.936 14 N -0.361 5.361 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.736 3.264 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.129 4.129 24 H 0.087 0.913 25 C -0.194 4.194 26 C -0.004 4.004 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.105 0.895 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.360 8.871 16.921 19.596 hybrid contribution -0.906 -0.073 -0.796 1.209 sum 3.454 8.798 16.125 18.691 Atomic orbital electron populations 1.23912 0.95075 1.02720 1.01491 1.21482 0.95161 0.94419 1.00216 1.20872 1.00300 0.94130 1.02439 1.19820 0.96070 0.94503 0.94638 1.22236 0.98741 0.96839 1.03631 1.21620 0.98607 1.03166 0.94486 1.20304 0.87813 0.76028 0.84226 1.90653 1.16828 1.48920 1.86299 1.48086 1.08708 1.69904 1.06299 1.22548 0.79688 0.99717 1.01805 1.22702 1.01380 0.98425 0.96884 1.20179 0.89416 0.94598 0.88368 0.93566 1.42406 1.36741 1.17157 1.39789 1.19169 1.06188 0.99685 1.11887 0.91337 1.24716 0.99760 0.96420 0.99902 1.69651 1.43212 1.08081 1.37140 0.86308 0.82667 0.77227 0.80208 1.21321 1.21753 1.21342 1.21727 0.96926 0.99153 0.95098 0.91334 1.21658 0.98093 1.02441 0.97168 1.21706 0.95030 0.99360 0.84352 0.87247 0.87848 0.91330 0.91544 0.91667 0.91568 0.90932 0.90426 0.91890 0.92058 0.91644 0.91989 0.87989 0.90706 0.92321 0.78243 0.93487 0.93118 0.90788 0.93867 0.89511 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 11.33 29.02 0.33 -1.38 16 2 C -0.11 -1.11 3.35 -101.06 -0.34 -1.45 16 3 C -0.12 -1.12 9.64 36.01 0.35 -0.77 16 4 C -0.05 -0.54 0.61 -156.81 -0.10 -0.63 16 5 C -0.16 -1.64 7.07 37.15 0.26 -1.38 16 6 C -0.12 -1.28 7.49 37.16 0.28 -1.00 16 7 C 0.53 7.79 6.18 -10.99 -0.07 7.72 16 8 O -0.55 -9.76 15.43 5.55 0.09 -9.67 16 9 N -0.60 -8.64 2.96 -172.77 -0.51 -9.15 16 10 C 0.09 1.14 4.37 -3.71 -0.02 1.13 16 11 C -0.15 -2.57 5.52 -26.61 -0.15 -2.71 16 12 C 0.18 3.52 2.19 -67.89 -0.15 3.37 16 13 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 14 N -0.72 -17.32 4.41 -53.39 -0.24 -17.55 16 15 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 19 Si 0.90 21.97 29.55 -169.99 -5.02 16.94 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.11 -1.84 2.46 -90.50 -0.22 -2.06 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 25 C -0.14 -2.26 9.03 37.16 0.34 -1.92 16 26 C 0.12 1.78 5.73 -3.70 -0.02 1.76 16 27 H 0.11 0.91 5.46 -52.48 -0.29 0.62 16 28 H 0.10 0.79 8.04 -52.49 -0.42 0.37 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 31 H 0.06 0.61 6.75 -51.93 -0.35 0.26 16 32 H 0.07 0.71 8.13 -51.92 -0.42 0.29 16 33 H 0.07 0.61 6.99 -51.93 -0.36 0.25 16 34 H 0.08 0.88 5.00 -51.93 -0.26 0.62 16 35 H 0.06 0.69 6.95 -51.93 -0.36 0.33 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.19 1.59 -51.93 -0.08 1.11 16 40 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 41 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 42 H 0.38 9.98 7.50 -40.82 -0.31 9.67 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.44 7.36 -51.93 -0.38 1.05 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.37 7.00 -51.93 -0.36 1.00 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -30.36 361.47 -7.47 -37.83 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.20 Total: 9.37 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 0.25 Total: -6.28 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.02 Total: -53.63 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.36 -7.47 -37.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036138674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.092 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds